BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66090.1
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951637 jgi|Araly1|951637|scaffold_803524.1 848 0.0
> Ahg951637 jgi|Araly1|951637|scaffold_803524.1
Length=685
Score = 848 bits (459), Expect = 0.0
Identities = 603/669 (90%), Gaps = 23/669 (3%)
Strand=Plus/Plus
Query 78 AACTCCGTCGCAACTTCAATGGCATCTGCTCACTCCATAGCCGCCGTTTCTGTTCTCGAT 137
||||||||| ||| |||||||||||||||||| ||| | ||||||||| ||||||||| |
Sbjct 3 AACTCCGTCTCAATTTCAATGGCATCTGCTCATTCCCTCGCCGCCGTTCCTGTTCTCGCT 62
Query 138 GCGG----C--CTCCAAGCAAGCAACActt-c--cttcttcttcttcttcttcctctgcg 188
|||| | ||||||||||||||||||| | ||||||||||||||||||||| | |
Sbjct 63 GCGGCCTCCAACTCCAAGCAAGCAACACTTCCTTCTTCTTCTTCTTCTTCTTCCTATACT 122
Query 189 ctctaccctctttcttctcttcGATCTAAACCTCGCCAGCAGCTTCTCTCCCTACGCAGT 248
||| || |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 123 CTCCACTCTCTTTCTTCTCTTCGATCTAAACCTCGCCAGCAGCACCTCTCCCTTCGCAGT 182
Query 249 GTCG--CTC----TCAAAGGTCGAGTAAAGGCGCAGGCAAAAGAAGCAGAAGCTAGTCCA 302
|||| ||| |||||| || |||||||||||| ||||||||| ||| | ||||
Sbjct 183 GTCGCCCTCAAAGACAAAGGGGGACCAAAGGCGCAGGCGAAAGAAGCACAAGGAAATCCA 242
Query 303 AGTCCAGTGGGAGTGGGAGACGCATTCAGTAATGTGAAGCATCTTCTCCTGCCGGTGATT 362
| | || || |||||| || ||||||||||||||||||||||| ||||| || |||
Sbjct 243 ATTACA----GA--GGGAGATGCTTTCAGTAATGTGAAGCATCTTCTTCTGCCAGTTATT 296
Query 363 GATCGGAATCCTTATCTTTCTGAAGGCACCAGACAGGCTGCTGCTACAACAACCAGCTTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 297 GATCGGAATCCTTATCTTTCTGAAGGCACCAGACAGGCTGCTGCTACAACAGCTAGTTTG 356
Query 423 GCAAAGAAGTATGGAGCTGATATCACAGTTGTAGTCATTGACGAAGAAAAGAGAGAATCA 482
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCAAACAAGTATGGAGCTGATATCACAGTTGTAGTCATTGACGAAGAAAAGAGAGAATCA 416
Query 483 TCTTCGGAGCATGAGACTCAAGTATCCAACATCCGGTGGCATTTGTCTGAAGGTGGGTTC 542
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 417 TCTTCGGAGCATGAGACTCAAGTATCTAACATCCGGTGGCATTTATCCCAAGGTGGGTTC 476
Query 543 GAGGAGTTCAAGCTGTTGGAGAGGCTTGGGGAAGGGAAAAAAG-CGACGGCCATAATAGG 601
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 477 GAGGAGTTCAAGCTGTTGGAGAGGCTTGGGGAAGG-AAAAAAGGCGACGGCCATAATAGG 535
Query 602 AGAGGTGGCAGATGAGCTGAAGATGGAGCTGGTGGTGATGAGCATGGAAGCCATCCACTC 661
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 536 AGAGGTGGCAGATGAGCTGAGGATGGAGCTGGTGGTGATGAGTATGGAAGCCATCCACTC 595
Query 662 TAAGTACATTGACGCCAATCTACTCGCTGAGTTCATCCCCTGCCCCGTCCTCCTCTTGCC 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TAAGTACATTGACGCCAATCTACTCGCTGAGTTCATCCCCTGCCCCGTCCTCCTCTTGCC 655
Query 722 CTTGTGATC 730
| |||||||
Sbjct 656 CCTGTGATC 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35073083640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5