BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66100.1
Length=1746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497006 jgi|Araly1|497006|fgenesh2_kg.8__2822__AT5G66100.1 1738 0.0
> Ahg497006 jgi|Araly1|497006|fgenesh2_kg.8__2822__AT5G66100.1
Length=1529
Score = 1738 bits (941), Expect = 0.0
Identities = 1403/1606 (87%), Gaps = 111/1606 (7%)
Strand=Plus/Plus
Query 132 ctctctctTCCTCTGTTACATGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTTCCTCTGTTACAGGATGGCTACGACGGCGAGTAGTGCCGCTAATTCTGCATC 60
Query 192 TCGCTTCTCCATTGATTCCTCTATCTCGCGATCACGTCACGGCGATTCCTCTCCCTGGTT 251
|||||||||||||||||||||| | ||||||||| ||||| |||||||||||||||||||
Sbjct 61 TCGCTTCTCCATTGATTCCTCTTTGTCGCGATCAAGTCACAGCGATTCCTCTCCCTGGTT 120
Query 252 GTTACCT--T-CTGATTCCCATGATCATCCGACTCTTTCCCTCTCCCAGGACGATCCCTT 308
| | ||| | |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 121 GATGCCTGCTGCTGATTCCCATGATGATCCGGCTCCTTCCCTCTCCCAGGACGA------ 174
Query 309 CTCAGCGCCTTCGGTCTCCCCGCCCACCGGAAATAACTCTTCCGACTACGACAATGCTGA 368
| | ||||| | | ||||||||| | ||||||||||||||||||||||
Sbjct 175 -T---C-CCTTC--T-T-------AACCGGAAATGGCACTTCCGACTACGACAATGCTGA 219
Query 369 TAAGAAGCCTCCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCCTCCGATGTCGGCCC 428
| ||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 220 TCAGAAG---CCTCCTGTCTGGAACATGCCTTCTTCTAATAGCTCC-CC-----C-G--A 267
Query 429 TGTCATGGGCGCCGCCGAATCCTGGCCTGCTCTCTCTCTTTCTGCTCGCTCTTCTTCCAT 488
||||||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct 268 TGTCATGGGCGCCGCCGAATCCTGGCCTG------CTC-TTC-G---G-TCTTCTTCCAA 315
Query 489 CAAGTCTCCCTCTTTGGATGCTTCCAAACCTTT-TCCTGATGG---------ATCATCGT 538
||||||||||||||| ||| ||||||||||||| | ||||||| |||||| |
Sbjct 316 CAAGTCTCCCTCTTTCGATTCTTCCAAACCTTTAT-CTGATGGATCATCATCATCATCAT 374
Query 539 CATCA--AT-----A--CCGCCTCCCCAGGCTACTTCCAACACCAGCACCAATGCCAATG 589
||||| || | ||||||||||||||| | ||| || |||||||||||
Sbjct 375 CATCATCATCACCAATGCCGCCTCCCCAGGCT-GGTGGAACTCC--TTTCAATGCCAATG 431
Query 590 CAGGCTCGAGTGTTTCTGCTACCTCATCTGAAAACAGTGCTGTTAATAATAGCCAGAGGA 649
| ||||| |||||| ||||||||||||||||||||| | |||| |||||||||| |||||
Sbjct 432 CTGGCTCAAGTGTTGCTGCTACCTCATCTGAAAACAATACTGTGAATAATAGCCCGAGGA 491
Query 650 AACCTTTTAGACGGAATAACAACACATCATCTTCCAGTA--C-CAGTAGT--AA-CGTCT 703
||||||||||||||||||||||| ||||||||||||||| | || | | || | |
Sbjct 492 AACCTTTTAGACGGAATAACAACGCATCATCTTCCAGTAGTCACA-T-CTCCAACCCAC- 548
Query 704 CCAATGCTGCGCCTTTAAACACCAGAGATCAGAATCACAGC-CAAAGGGGTGGTGGCTCT 762
||| |||||||||||| |||||||||||||||| ||||| | |||||||||||| |||
Sbjct 549 CCAGTGCTGCGCCTTTTAACACCAGAGATCAGACTCACA-CTCAAAGGGGTGGT---TCT 604
Query 763 TTTGGTTCAGGGAATTTCCGTAATTCTCAGAGGAATCGCAACAGCAGCTCTTACCCTCGT 822
| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 605 TATGGCTCAGGGAATTTCCGTAATTCCCAGAGGAATCGCAACAACAGCTCTTACCCTCGT 664
Query 823 GGGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAGCATGGCAACCAAAGCGGCTTT 882
||||||||||||||||||||||||||||||||||||||| | | | | || |||
Sbjct 665 GGGGAAGGTCTTCACCATGGAAACAGGCGCAATTATGAG-A--G----C---G-GG-TTT 712
Query 883 TCTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTGTTGGGATG 942
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 TCTCACCGTAACTATAGTGGGAGAGACATGCACTTGCAACCGCAGAGGGGTATTGGGATG 772
Query 943 ATTAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATG 1002
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 ATGAGACCGCAGATGCTGATGGGGCCACCATCTTTTCCTGCCAGTAGTGCGCAATATATG 832
Query 1003 GCAGCGCCTCAATTAGGTTCATATGGTGGCCCCATTATCTACCCAGATTATGCACAGCAT 1062
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 833 GCAGCGCCTCAATTAGGTTCATATGGTGGCCCCATGATCTACCCAGATTATGCACAGCAT 892
Query 1063 GTCTTTATGCCACATCCATCTCCAGATCCGATGGGTTTAGTTGGACCCTTCCCACTTCAA 1122
||||||||||||| | || | ||| || |||| |||||||||||||||||||| ||
Sbjct 893 GTCTTTATGCCAC--C--TC-C-AGACCCCATGGCTTTAGTTGGACCCTTCCCACCTCTG 946
Query 1123 CCCATGTATTTTCGCAATTTTGATGCCATCTTGTACAATAAGATATTGACACAAGTAGAA 1182
||| ||||||||| || || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 947 CCCGTGTATTTTCCCAGTTATGATGCCATGTTGTACAATAAGATATTGACACAAGTAGAA 1006
Query 1183 TATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACATTTACGGGATCAGATGAATGAT 1242
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1007 TATTATTTCAGCGCTGATAACCTGAGCAGAGATGAACACTTGCGGGATCAGATGAATGAT 1066
Query 1243 GAAGGTTGGGTTCCTGTTAGAGTAATAGCAGCATTCAGGAGACTTGCGGAACTGACCAAT 1302
||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||
Sbjct 1067 GAAGGTTGGGTTCCTGTAAGAGTAATAGCAGGGTTCAGGAGACTTGCAGAACTGACCAAC 1126
Query 1303 AACATCCAGACTATATTGGAAGCACTGAGAAGTTCAGAAGTCGTGGAAATTCAGGGTGAA 1362
|||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 1127 AACATCCACACTATATTGGAAGCACTAAAAAGTTCAGAAGTCGTGGAAATTAAGGGTGAA 1186
Query 1363 ACATTAAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAGGTCC 1422
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1187 ACATTGAGGAGGCGAGGAGATTGGGACAAGTATTTATTGCCTCGTGAGCCTTCAAAGTTC 1246
Query 1423 GGTCCAGCTGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAAATTgagagcatgact 1482
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1247 GGTCCAGCAGCGGGGGCTAGCAACAATGCCTCACTGGTGTCTCAACTTGAGAGCATGGCT 1306
Query 1483 ctatcagagaggagcagagagggagtgtaagagagatgctactaagagagagaaagaaag 1542
||||||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||
Sbjct 1307 CTATCAGAGAGGAGCAGAGAGGGAGAGTAA-AGAGATGCGACTAAGAGAGAGGAAGAAAG 1365
Query 1543 aTGTGTTTGCAAGCCTATCTCTCT-TC-CTTTCCTTTTTTGTGTTTTGTCGAGAATTGGA 1600
||||||||||| |||| ||||||| | |||||||||||| ||||||||||||||| |||
Sbjct 1366 ATGTGTTTGCATGCCTCTCTCTCTCTTTCTTTCCTTTTTTTTGTTTTGTCGAGAATCGGA 1425
Query 1601 TATGAACTGATTGATACTCAGTCTCATAAGaaaaaaaaCAA-TAATATGCTGCTCAACtt 1659
|| ||||||||||||| || ||||||| | || |||||||| ||||||||||||||||||
Sbjct 1426 TAGGAACTGATTGATAGTCGGTCTCATCATAAGAAAAACAAATAATATGCTGCTCAACTT 1485
Query 1660 tttttgaacttttctggtttt-ta-aaatttttttGGATAGGAAAC 1703
||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 1486 TTTTTGAACTTTTCTGGTTTTCTTTAAATTTTT--GGATAGGAAAC 1529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65515221400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5