BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66110.1

Length=621
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497005 jgi|Araly1|497005|fgenesh2_kg.8__2821__AT5G66110.1         830    0.0  


> Ahg497005 jgi|Araly1|497005|fgenesh2_kg.8__2821__AT5G66110.1
Length=543

 Score =  830 bits (449),  Expect = 0.0
 Identities = 477/491 (97%), Gaps = 0/491 (0%)
 Strand=Plus/Plus

Query  29   TCGTAATCGGCGCTAATGGGCTTCCGAGACATTTGTTACCGGAAACATCACAAAAAGCTT  88
            |||||||||||| |||||||||||| |||| | |||||||||||||||||||||||||| 
Sbjct  1    TCGTAATCGGCGTTAATGGGCTTCCAAGACCTCTGTTACCGGAAACATCACAAAAAGCTC  60

Query  89   AAGCAGTTCCAGAAGGTGGAGATAAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGACGG  148
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AAGCAGTTCCAGAGGGTGGAGATAAAAGTGAAGATGGACTGCGAAGGGTGCGAGAGACGG  120

Query  149  GTGAGGAAGTCGGTGGAAGGCATGAAAGGAGTCAGCAAAGTCACCGTCGATCCTAAACAG  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTGAGGAAGTCGGTGGAAGGCATGAAAGGAGTCAGCAAAGTCACCGTCGATCCTAAACAG  180

Query  209  AGCAAACTCACGGTCGAGGGATTCGTCCAACCGAGCAAGGTGGTGCATCGGGTGATGCAT  268
            |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  AGCAAACTCACGGTGGAGGGATTCGTCCAACCGAACAAGGTGGTGCATCGGGTGATGCAT  240

Query  269  CGGACAGGGAAGAAGGCGGAGCTGTGGCCTTACGTACCTTACGAGGTGGTGCCACACCCT  328
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  241  CGGACGGGGAAGAAGGCGGAGCTGTGGCCTTACGTGCCTTACGAGGTGGTGCCACACCCT  300

Query  329  TACGCACCTGGTGCCTACGACAAGAAGGCCCCTCCTGGTTACGTTCGTAATGCACTCGCC  388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TACGCACCTGGTGCCTACGACAAGAAGGCCCCTCCTGGTTACGTTCGTAATGCACTCGCC  360

Query  389  GACCCTCTAGTGGCCCCGCTTGCTCGTGCCAGCTCCTTCGAGGTCAAATACACTTCTGCT  448
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GACCCTCTAGTGGCTCCGCTTGCTCGTGCCAGCTCCTTCGAGGTCAAATACACTTCTGCT  420

Query  449  TTCAGCGATGACAATCCCAACGCTTGTACCATCATGTGATCAATTCATATATATAGTTAA  508
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  421  TTCAGCGATGAGAATCCCAACGCTTGTACCATCATGTGATCAATTTATATATATAGTTAA  480

Query  509  CTACACATGTG  519
            ||| |||||||
Sbjct  481  CTATACATGTG  491


 Score = 60.2 bits (32),  Expect = 2e-08
 Identities = 48/55 (87%), Gaps = 4/55 (7%)
 Strand=Plus/Plus

Query  569  GTCTGAATGTTTGTACG-AGTCA-TCATCTAAATTCCACTGAAATTAAAAGGGAG  621
            ||||||||| ||| | | | | | |||||||||||||||||||||||||||||||
Sbjct  491  GTCTGAATG-TTGCATGTA-TGAGTCATCTAAATTCCACTGAAATTAAAAGGGAG  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22721258532


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5