BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66120.2
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358942 jgi|Araly1|358942|fgenesh1_pg.C_scaffold_8002729 2126 0.0
> Ahg358942 jgi|Araly1|358942|fgenesh1_pg.C_scaffold_8002729
Length=1332
Score = 2126 bits (1151), Expect = 0.0
Identities = 1262/1314 (96%), Gaps = 13/1314 (1%)
Strand=Plus/Plus
Query 148 TCTCTTTCCAACGTCGCCGCCTCCAAGAATCTCAACTCCTTTCAAAGCCGTGCCTTTATT 207
|||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 29 TCTC-TTCCAACGTCGCCGCCTCTAAGAATCTCAGCTCCTTTCAAAGCCGTGCCTTTATT 87
Query 208 G---CTCCACCAACTAtttttttCCCTGTGGCTTCTGCAAAGTCTAAACCTGGGGAACTT 264
| |||||||||| |||| |||||| | |||||||||||||||||||||||
Sbjct 88 GCTCCTCCACCAACCATTTCTTTCCC----G-----GCAAAGTCTAAACCTGGGGAACTA 138
Query 265 TCTTTATCTTCCACGACTCTTTCCAGGTCTCGTGTGCGCGCCGGTGCTAGCCAGCTCATG 324
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 139 TCTTTATCTTCCTCGACTCTTTCCAAGTCTCGTGTGCGCGCCGGTGCTAGCCAGCTCATG 198
Query 325 AACGAACCGCTTAACGATCAACGCTCCATCTCTTCTCCCACTGTCGTCGAGGTTGATCTT 384
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 199 AACGAACCGCTTAACGATCAACGCTCCTTCTCTTCTCCCACAGTCGTCGAGGTTGATCTG 258
Query 385 GGTGACCGGAGTTATCCGATCTATATCGGCGCCGGCTTGCTTGATCACTCAGAACTTCTT 444
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 259 GGTGACCGGAGTTATCCGATCTATATCGGCGCCGGCTTGCTCGATCACTCTGAACTTCTT 318
Query 445 CAAAGGCATGTTCACGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTC 504
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CAAAGGCATGTTCATGGAAAGAGAGTGCTTGTGGTCACCAATGATCGAGTTGCTCCTCTC 378
Query 505 TACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCAAACGTGACAGTGGAAAGT 564
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||
Sbjct 379 TACCTGGACAAGACTATAGATGCTTTAACCAGAGGAAATCCCAACGTCACTGTGGAGAGT 438
Query 565 GTAATTTTGCCTGATGGAGAGAAATACAAAGACATGGATACTCTCATGAAAGTCTTCGAC 624
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 439 GTTATTTTGCCTGATGGAGAGAAATACAAGGACATGGATACTCTCATGAAAGTCTTCGAC 498
Query 625 AAGGCCATTGAGTCTCGCCTAGATAGACGATGTACATTTGTTGCCCTTGGAGGCGGTGTG 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AAGGCCATTGAGTCTCGCCTAGATAGACGATGTACATTTGTTGCCCTTGGAGGCGGTGTG 558
Query 685 ATAGGCGATATGTGTGGATATGCTGCTGCATCGTACCTACGTGGTGTCAATTTCATCCAA 744
||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 559 ATAGGAGATATGTGTGGATATGCTGCTGCATCTTACCTGCGTGGTGTTAATTTCATCCAA 618
Query 745 ATTCCTACCACTGTTATGGCACAGGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAAT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ATTCCTACCACTGTTATGGCACAGGTTGATTCTTCTGTAGGTGGCAAAACAGGCATAAAT 678
Query 805 CATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGAC 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CATCGTCTTGGAAAGAATTTGATCGGTGCATTTTACCAACCACAGTGTGTGCTAGTAGAC 738
Query 865 ACTGACACGTTGAACACATTGCCAGATAGGGAGATGGCATCAGGCCTAGCTGAAGTGATC 924
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 739 ACTGACACATTGAACACATTGCCAGATAGGGAGATGGCATCAGGCCTCGCTGAAGTGATC 798
Query 925 AAGTACGGGCTTATCAGGGATGCCGAGTTCTTTGAATGGCAGGAGAAGAACATTGAGGCA 984
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 799 AAGTACGGGCTTATCAGGGATGCCGAGTTCTTTGAATGGCAGGAGAAGAACATCGAGGCA 858
Query 985 TTGCTGGCAAGGGATCCAGCTGCATTAGCTTTTGCTATAAAGCGATCATGTGAAAACAAG 1044
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 859 TTGCTGGCAAGGGATCCAGCTGCATTAGCTTTTGCTATAAAGAGATCATGTGAAAACAAG 918
Query 1045 GCAGACGTTGTATCACAAGATGAGAAAGAAAGCGGCTTGCGAGCAACCTTAAATTTGGGT 1104
||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 919 GCAGACGTTGTGTCCCAAGATGAGAAAGAAAGCGGCTTGCGAGCAACCCTAAATTTGGGT 978
Query 1105 CATACCTTTGGCCATGCCATAGAAACTGGCTTTGGTTATGGAGAGTGGCTCCATGGAGAA 1164
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 CATACATTTGGCCATGCCATAGAAACTGGCTTTGGTTATGGAGAGTGGCTCCATGGAGAA 1038
Query 1165 GCTGTTGCAGCTGGCACGGTAATGGCAGTGGACATGTCATATCGTCTTGGTTGGATCGAT 1224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1039 GCTGTTGCAGCTGGCACGGTAATGGCAGTGGACATGTCATATCGTCTTGGTTGGATAGAT 1098
Query 1225 GAATCGATTGTTAAGAGAGTGAACAAGATCCTAGTACGGGCGAAATTGCCTACAACTCCG 1284
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1099 GAATCGATCGTTAAGAGAGTGAACAAGATCCTAGAACGGGCGAAATTGCCTACAACGCCT 1158
Query 1285 CCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGGTGGACAAGAAAGTGGCA 1344
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1159 CCAGAGAGCATGACCGTGAGCATGTTCAAATCCATAATGGCGGTGGACAAGAAAGTGGCA 1218
Query 1345 GATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACTGGA 1404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1219 GATGGACTGCTGAGGCTGATTCTTCTCAAAGGCCCGCTGGGAAACTGCGTGTTCACGGGA 1278
Query 1405 GATTATGATCGGGAAGCGTTGGATGCCACGCTTCGTGCATTCTCCAAATCCTGA 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GATTATGATCGGGAAGCGTTGGATGCCACGCTTCGTGCATTCTCCAAATCCTGA 1332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5