BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66140.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951631 jgi|Araly1|951631|scaffold_803518.1 1301 0.0
Ahg937986 jgi|Araly1|937986|scaffold_502177.1 765 0.0
> Ahg951631 jgi|Araly1|951631|scaffold_803518.1
Length=793
Score = 1301 bits (704), Expect = 0.0
Identities = 748/770 (97%), Gaps = 0/770 (0%)
Strand=Plus/Plus
Query 84 AGAGATGGCTAGATACGATCGAGCAATTACTGTCTTCTCCCCCGACGGTCACCTCTTTCA 143
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 17 AGAGATGGCTAGATACGATCGAGCAATCACTGTCTTCTCCCCCGACGGTCACCTCTTTCA 76
Query 144 AGTCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTAC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AGTCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTAC 136
Query 204 CGACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGATC 263
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 137 CGACACCGTCGTCCTCGCCGTCGAGAAGAAATCTACCCCCAAGCTTCAGGATTCTAGATC 196
Query 264 AGCCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCGGGGCTCAAGGC 323
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 197 AGCCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCCGGGCTCAAGGC 256
Query 324 TGATGCCCGAGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCACAGGCTTACACT 383
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 257 AGATGCCCGTGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCATAGGCTTACACT 316
Query 384 TGAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTA 443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 AGAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTA 376
Query 444 TACCCAAAGTGGTGGTGTCAGACCCTTCGGTCTTTCTACTCTTATCGTTGGCTTTGACCC 503
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 377 TACCCAAAGTGGTGGTGTCAGACCTTTCGGTCTTTCTACTCTTATCGTTGGCTTCGACCC 436
Query 504 TTACTCTCGCCTCCCTTCCCTATATCAGACTGATCCTTCTGGGACTTTCTCTGCTTGGAA 563
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 437 TTACTCTCGTCTGCCTTCCCTATATCAGACTGATCCTTCTGGCACTTTCTCTGCTTGGAA 496
Query 564 AGCTAATGCTACCGGCAGAAACTCCAACTCTATTAGGGAATTCCTCGAGAAGAACTACAA 623
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 497 AGCTAATGCAACCGGCAGAAACTCCAACTCAATTAGGGAATTCCTGGAGAAGAACTACAA 556
Query 624 AGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTGCTTGAGGTAGTTGA 683
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 557 AGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTTCTTGAGGTAGTTGA 616
Query 684 GAGTGGCGGAAAGAACATTGAGGTTGCCGTAATGACACGGGAGGAAACTGGGCTGCGCCA 743
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 617 GAGTGGAGGAAAGAACATTGAGGTTGCTGTAATGACACGGGAGGAAACTGGTCTGCGCCA 676
Query 744 GCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCAAGATCGAAGCTGAAAAGGCGGCCGC 803
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 677 GCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCGAGATCGAAGCTGAAAAGGCGGCCGC 736
Query 804 AGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGATAAAACAATAACT 853
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGATAAAACAATAACT 786
> Ahg937986 jgi|Araly1|937986|scaffold_502177.1
Length=799
Score = 765 bits (414), Expect = 0.0
Identities = 649/763 (85%), Gaps = 13/763 (2%)
Strand=Plus/Plus
Query 86 AGATGGCTAGATACGATCGAGCAATTACTGTCTTCTCCCCCGACGGTCACCTCTTTCAAG 145
||||||| ||||||||||||||||| ||||| || || |||||||| ||||| ||||| |
Sbjct 19 AGATGGCGAGATACGATCGAGCAATCACTGTATTTTCTCCCGACGGCCACCTATTTCAGG 78
Query 146 TCGAATACGCCCTTGAAGCCGTCCGCAAGGGTAACGCCGCCGTCGGTGTCCGCGGTACCG 205
| || || ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 79 TGGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACCG 138
Query 206 ACACCGTTGTCCTCGCCGTCGAGAAGAAGTCCACCCCCAAGCTTCAGGATTCTAGATCAG 265
| || || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 139 ATACTGTCGTCCTCGCCGTCGAGAAGAAATCCACCCCTAAGCTCCAGGATTCTAGATCAG 198
Query 266 CCAGAAAAATTGTGAGCCTTGACAATCACATTGCCTTGGCATGCGCGGGGCTCAAGGCTG 325
| ||||| || ||||| ||||| ||||||||||| ||||| ||||| || || ||||| |
Sbjct 199 CTAGAAAGATAGTGAGTCTTGATAATCACATTGCGTTGGCCTGCGCTGGACTTAAGGCAG 258
Query 326 ATGCCCGAGTCTTGATTAACAAAGCAAGGATCGAGTGTCAAAGCCACAGGCTTACACTT- 384
|||| || |||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 259 ATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGCTTAC-GTTG 317
Query 385 GAGGACCCTGTCACTGTTGAGTACATCACTCGCTACATTGCTGGCCTTCAACAGAAGTAT 444
|||||||| || ||||||||||||||||| || ||||| || || |||||||||||||||
Sbjct 318 GAGGACCCAGTGACTGTTGAGTACATCACGCGTTACATAGCAGGGCTTCAACAGAAGTAT 377
Query 445 ACCCAAAGTGGTGGTGTCAGACCCTTCGGTCTTTCTACTCTTATCGTTGGCTTTGA-CCC 503
|| || ||||||||||| ||||| || |||||||| |||||||| ||||| ||||| |||
Sbjct 378 ACTCAGAGTGGTGGTGTGAGACCTTTTGGTCTTTCCACTCTTATTGTTGGGTTTGATCCC 437
Query 504 TTACTCTCGCCT-CCCTTCCCTATATCAGACTGATCCTTCTGGGACTTTCTCTGCTTGGA 562
||| |||| | ||| | || |||||||| ||||| ||||| ||||||||||||||||
Sbjct 438 -TACACTCGTATACCC-GCGCTTTATCAGACCGATCCATCTGGTACTTTCTCTGCTTGGA 495
Query 563 AAGCTAATGCTACCGGCAGAAACTCCAACTCTATTAGGGAATTCCTCGAGAAGAACTACA 622
| |||||||| || || |||||||| ||||| |||||||| || || ||||| |||||||
Sbjct 496 AGGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAAACTACA 555
Query 623 AAGAATCCTCTGGCCAAGAAACTATTAAACTCGCTATCCGTGCTCTGCTTGAGGTAGTTG 682
|||||| |||||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct 556 AAGAATGCTCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGGTAGTTG 615
Query 683 AGAGTGGCGGAAAGAACATTGAGGTTGCCGTAATGACACGGGAGGAA-ACTGG-G--CTG 738
|||| || |||||||||||||||||||| ||||||||||| |||||| | || | |||
Sbjct 616 AGAGCGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGAA-GGTGTTCTG 674
Query 739 C-GCCAGCTAGAAGAAGCTGAAATTGATGCAATCGTGGCCAAGATCGAAGCTGAAAAGGC 797
|| | |||||||||| ||||||||| || ||||| |||| ||||| || |||||
Sbjct 675 AAGCAA-CTAGAAGAAGAAGAAATTGATATTATTGTGGCTGAGATTGAAGCAGAGAAGGC 733
Query 798 GGCCGCAGAAGCAGCCAAGAAAGGCCCTCCAAAGGAAACTTGA 840
|| |||||||| ||||||||||||||| | |||||||| |||
Sbjct 734 TGCAGCAGAAGCGGCCAAGAAAGGCCCTGCGAAGGAAACATGA 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5