BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66150.1
Length=3144
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497001 jgi|Araly1|497001|fgenesh2_kg.8__2817__AT5G66150.1 4848 0.0
> Ahg497001 jgi|Araly1|497001|fgenesh2_kg.8__2817__AT5G66150.1
Length=3144
Score = 4848 bits (2625), Expect = 0.0
Identities = 2977/3148 (95%), Gaps = 20/3148 (1%)
Strand=Plus/Plus
Query 7 AAACCGGGTATGTCTTTATTGAAAGGATCACTTTGTGTTATTGTTTTTCTTCTTCTGTTG 66
||||||||| ||||||||||||||||| |||||||||||||||||| | |||| | ||||
Sbjct 7 AAACCGGGTTTGTCTTTATTGAAAGGAGCACTTTGTGTTATTGTTTCTGTTCTCCGGTTG 66
Query 67 TCGTTGGTTGAGAGCGTCAAAGGCGGGGGATACGTGAAGTATGGAACCGAAGCTAAAGTG 126
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 67 TC---GGTTGAGAGCGTCAAAGGCGGGGGCTACGTGAAGTATGGCACCGAAGCTAAAGTG 123
Query 127 GTTCCGGGGAAACTAAATGTTCATCTTGTTCCGCATTCGCATGACGATGTCGGCTGGTTG 186
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 GTTCCGGGGAAACTAAATGTTCATCTTGTTCCGCATTCGCATGACGATGTCGGGTGGTTG 183
Query 187 AAAACTGTTGATCAGTACTACGTAGGATCTAACAACAGAATCCAGAACGCTTGCGTGAGG 246
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||| ||
Sbjct 184 AAAACTGTTGATCAGTACTATGTAGGATCGAACAACAGTATCCAGAACGCTTGTGTGCGG 243
Query 247 AACGTCCTAGACTCGGTGGTGGATTCTCTACTTCGTGATCCCAATAGAAAGTTTGTGTTT 306
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 244 AACGTGCTAGACTCGGTGGTGGATTCTCTACTTGGCGATCCCAATAGAAAGTTTGTTTTT 303
Query 307 GCGGAAATGGCCTTCTTTACGCGTTGGTGGGAAGAACAAAGCCCCGAGAGACAAGAGCAA 366
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 304 GCGGAAATGGCTTTCTTTACGCGTTGGTGGGAAGAACAAAGCCCCGAGACACAAGAGCAA 363
Query 367 GTGAGGAGACTAGTGAAATCCGGGCAACTAGAGTTTGTAAATGGAGGATGGGCTATGAAT 426
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 GTGAAGAGACTAGTGAAATCGGGGCAACTAGAGTTTGTAAATGGAGGATGGGCTATGAAT 423
Query 427 GATGAAGCAACGTGCCATTACATAGATATGATAGACCAAACCACAAAGGGGCATCGGTTT 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GATGAAGCAACGTGCCATTACATAGATATGATAGACCAAACCACAAAGGGGCATCGGTTT 483
Query 487 ATAAAGCAACAGTTCAACACAACTCCACGTGCTGCTTGGCAAATCGATCCCTTTGGTCAT 546
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 484 ATAAAGCAACAGTTCAATACAACTCCACGTGCTGCTTGGCAAATCGACCCCTTTGGTCAT 543
Query 547 TCCTCTGTTCAAGCTTACCTCCTTGGAGCAGAGTTAGGGTTGGATTCTGTGCATTTCGCG 606
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TCCTCTGTGCAAGCTTACCTCCTTGGAGCAGAGTTAGGGTTGGATTCTGTGCATTTCGCG 603
Query 607 AGAATCGATTACCAAGACAGAGAAAAGCGAAAGGCCGAGAAATCACTTGAAGTCATCTGG 666
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||
Sbjct 604 AGAATCGATTACCAAGACAGAGAAAAGAGAAAGGCCGAGAAATCACTAGAAGTAATCTGG 663
Query 667 AGAGGATCAAAAACACTGGATTCTTCTTCTCAGATATTCACCAATATCTT-CTTTGTTCA 725
||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| |||||
Sbjct 664 AGAGGATCAAAAACATTGGCTTCTTCTTCTCAGATATTCACCAATGTCTTTCTT-GTTCA 722
Query 726 TTACGGCCCTCCCACTGGCTTTCACTATGAAGTCACCGACGATTACGTACCCCTCCAGGA 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 723 TTACGGCCCTCCCACTGGCTTTCACTATGAAGTCACCGACGATTACGTCCCCCTCCAGGA 782
Query 786 CAACCCTCGTTTCGATGGCTATAACATTAAGGAGGCGGTTAATGATTTCGTCAATGCTTC 845
||||||||||||||||| |||||||||||||||||| ||| || ||||||||||||||||
Sbjct 783 CAACCCTCGTTTCGATGCCTATAACATTAAGGAGGCCGTTGATAATTTCGTCAATGCTTC 842
Query 846 TCTTGTTTATGCTAATGTGAGTCGAGGGAACCATGTGATGTGGACAATGGGCGATGATTT 905
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 843 TCTGGTTTATGCCAATGTGAGTCGAGGGAACCATGTGATGTGGACAATGGGTGATGATTT 902
Query 906 TCAGTACCAGTTCGCCGAGTCTTGGTTCAGACAGATGGACAGACTTATCCATTATGTTAA 965
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 903 TCAGTACCAGTTCGCCGAGTCTTGGTTCAGGCAGATGGACAGACTCATCCATTACGTTAA 962
Query 966 CAAGGATGGCCGTGTGAACGCCTTGTACTCCACACCATCTCTCTATGTTGATGCCAAGAA 1025
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAAGGATGGCCGTGTCAACGCCTTGTACTCCACACCATCTCTCTATGTTGATGCCAAGAA 1022
Query 1026 TGTTGCCAATGTTACTTGGCCTCTCAAGACTCATGACTTTTTCCCATATGCGGATCGGGC 1085
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1023 TAATGCCAATGTTACTTGGCCTCTCAAGACTGGTGATTTTTTCCCATATGCGGATCGGGC 1082
Query 1086 ATACGCTTACTGGACTGGCTACTTCACCAGCCGTCCTGCTCTTAAACGATATGTTCGGGC 1145
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1083 ATACGCTTACTGGACTGGCTACTTCACCAGCCGTCCTGCTCTTAAACGTTATGTTCGGGC 1142
Query 1146 TCTTAGCGGATACTACATGGCTGCAAGGCAACTTGAATTTCTGGTGGGCAAGAACTCTGG 1205
||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||
Sbjct 1143 TCTTAGCGGATACTACATGGCTGCAAGGCAACTTGAATTTCGGGTAGGCAAGAAATCTGG 1202
Query 1206 AGGTCCAAACACTTACAGTCTTGGGGATGCTTTAGGGATAGCGCAGCACCATGATGCTGT 1265
||| ||||| |||| ||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 1203 AGGACCAAATACTTGCAGTCTTGGAGATGCTTTAGCGATAGCGCAGCACCACGATGCTGT 1262
Query 1266 CACTGGAACTGCCAAGCAGCATGTAACAAATGATTACATGAAACGCCTTGCTCTTGGTGC 1325
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1263 CACTGGAACTGCCAAGCAGCATGTAACAAATGATTACATGAAACGCCTTGCTGTTGGTGC 1322
Query 1326 TTCTGAGGCAGAAGCTGTGGTGAATTCTGCGCTGGCATGCCTAATGAACAAAGCACCAAA 1385
|||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 1323 TTCTGAGGCAGAAGCTTTGGTGAATGCTGCGCTGGCATGCCTATTGAACAAGGCACCAAA 1382
Query 1386 AGGTGGCTGCACAAAGCCTGCAATAGCATTCAGCCAGCAGTGCTCGTTGATGAATATCAG 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AGGTGGCTGCACAAAGCCTGCAATAGCATTCAGCCAGCAGTGCTCGTTGATGAATATCAG 1442
Query 1446 CTATTGCCCATCGACAGAAGAAACCCTTCCAGGCCAGAAGAGCTTGATTCTGGTGGCGTA 1505
||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1443 CTACTGCCCATCGACAGAAGAAACCATTCCAAGCCAGAAGAGCTTGATTCTGGTGGCGTA 1502
Query 1506 TAACTCCCTTGGATGGAACCGTACAGAAATCATCAGGATTCCGGTCAATGATGCAGGTCT 1565
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TAACTCCCTTGGATGGAATCGTACAGAAATCATCAGGATTCCGGTCAATGATGCAGGTCT 1562
Query 1566 AAGTGTGGAAGATTCATCTGGAAACACCCTTGATGCTCAATACATCCCCATGGATAATGT 1625
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1563 AAGCGTGGAGGATTCATCTGGAAAAACCCTTGATGCTCAATACATCCCCATGGATAATGT 1622
Query 1626 CACGAGCAACCTCAGAAGTTTCTACACAAAAGCTTATTTAGGAATATCTTCCCTGCAGCG 1685
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1623 CACGAGCAACCTCAGAAGTTTCTATACAAAAGCTTATTTAGGAATATCTTCCCTGCAGAT 1682
Query 1686 TCCAAAGTATTGGCTCGTGTTTAAAGCAA-AGGTGCCACCACTTGGTTGGAACACATTCT 1744
|||||||||||||||||||||||| |||| || | || ||||||||||||||||||||||
Sbjct 1683 TCCAAAGTATTGGCTCGTGTTTAAGGCAACAG-TACCGCCACTTGGTTGGAACACATTCT 1741
Query 1745 TCATATCTAAAGCATCCGCACAAGGAAGCAACAATCACAAACACTCTTCAGTGATGCTTA 1804
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1742 TCATATCTAAAGCATCCGCACAAGGAAGCAGTAATCACACACACTCTTCAGTGATGCTTA 1801
Query 1805 GTCCGATGAACAATACGACTGAAATTGGTCCAGGAAATCTAAAGATGGTGTTTTCTTCAG 1864
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1802 GTCCGGTGAAAAATACGACTGAAATTGGTCCAGGAAATGTAAAGATGGTGTTTTCTTCAG 1861
Query 1865 ACTCTGGTCGTCTCGAACGGATGTACAACTCCAGAACAGGAGCTGACATAAAGGTGGATC 1924
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1862 ACTCTGGTCGTCTCGAACGGATATACAACTCCAGAACAGGAGCTGACATAATGGTGGATC 1921
Query 1925 AGAACTATTTCTGGTATGCTTCAAATGTTGGGGACGCAAAAGATCCCCAGGTTTCTGGTG 1984
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1922 AGAACTATTTCTGGTATGCTTCAAATGGTGGGGACTCAAAAGATCCCCAGGTTTCCGGTG 1981
Query 1985 CATATATATTTCGACCTAATGGTTCCTTGGCGTATCCTGTTTCGTCGTCCAAAATATGTA 2044
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1982 CATATATTTTTCGACCTAATGGTTCCTTGGCGTATCCTGTTTCGTCTTCCAAAATATGGA 2041
Query 2045 CCGTGACT-AGTGCTTTCATTGGCAATGGAAACGTGCAGTCAAAGTTGCAGATTGTGCGA 2103
|||| || | |||||||||||||||||| || | |||| ||||||||||||||||||||
Sbjct 2042 CCGTAACCGA-TGCTTTCATTGGCAATGGTAATGCGCAGCCAAAGTTGCAGATTGTGCGA 2100
Query 2104 GGGCCTTTAATAGATGAGGTGCACCAGCAGTTTAGTCCTTGGGTGGCACAGGTGGTAAGA 2163
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2101 GGGCCTTTGATAGATGAGGTGCACCAGCAGTTTAGTCCGTGGGTGGCACAGGTGGTAAGA 2160
Query 2164 CTATACAAAGAAAAAGAGCACGCCGAATTTGAGTTCACTATTGGTCCAATTTCTGTT-GG 2222
|| ||||||||||||||||||||||| |||||||||||||||||||||||| || | ||
Sbjct 2161 CTGTACAAAGAAAAAGAGCACGCCGAGTTTGAGTTCACTATTGGTCCAATTCCT-TCCGG 2219
Query 2223 TAAGGGACATCTAACAGGAAAAGAGATTATCACGCGAATGGTAACAGATATGACTACAGC 2282
||| ||| |||||| ||| ||||||||||||||||||||||||||| |||||||||| |
Sbjct 2220 TAATGGAGATCTAATAGGGAAAGAGATTATCACGCGAATGGTAACAAATATGACTACGGA 2279
Query 2283 TAAGG-AGTTCTATACTGACTCTAATGGAAGAGACTTTCTGAAACGGGTCCGGGACAACC 2341
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2280 TAAGGCA-TTCTATACTGACTCTAATGGAAGAGACTTTTTGAAACGGGTCCGGGACAACC 2338
Query 2342 GAACAGACTGGCATCTCGAAGTGAATGAGCCAATAGCAGGAAACTACTATCCGCTTAATC 2401
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 GAACAGACTGGCATCTCCAAGTGAATGAGCCAATAGCAGGAAACTACTATCCGCTTAATC 2398
Query 2402 TTGGAATGTACAT-AAAAGACGAGAAAGCAGAGTTGTCGGTGTTGGTTGATCGGGCTACT 2460
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 TTGGAATGTAC-TCAAAAGACGAGAAAGCAGAGTTGTCGGTGTTGGTTGATCGGGCTACT 2457
Query 2461 GGGGGTGCAAGTATTAAGGACGGTGAAATAGAGTTGATGCTTCACAGGAGAACGTCCATG 2520
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2458 GGGGGTGCTAGTATTAAGAACGGTGAAATAGAGTTGATGCTTCACAGGAGTACGTGCATG 2517
Query 2521 GATGACTCGAGAGGAGTGGAGGAGAGCCTTGTAGAAACTGTGTGTGTGAATGACACCTGC 2580
|||||| |||||||||| |||||| |||||| |||||||||||||||||||| ||||||
Sbjct 2518 GATGACGCGAGAGGAGTAGAGGAGGGCCTTGCAGAAACTGTGTGTGTGAATGGTACCTGC 2577
Query 2581 GCAGGATTGACGATTCGTGGGAATTACTATGTAAGCATAAATAAGGTAGGAGAAGGAGGG 2640
|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2578 GCAGGATTAACGGTTCGTGGGAATTACTATGTAAGCATAAATAGGGTAGGAGAAGGAGGG 2637
Query 2641 CGGTGGAGACGAGAGACTGGACAGGAAATATACTCACCTCTTCTAATGGCATTCGCACAC 2700
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 2638 CGGTGGAGACGAGAGACTGGGCAGGAATTATACTCTCCTCTTCTAATGGCATTCGCACAC 2697
Query 2701 GAGAACAAGGAGAAATGGAAAGCCTCAAATACTGTGAAAGGTTATGCCATGGATCATCTC 2760
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 2698 GAGAACAAGGAGAAATGGAAAGCCTCCAATACTGTGAAAGGTTATGCCATGGATCCTCTC 2757
Query 2761 TACACCTTGCCTCAAAACATTGCTCTCATCACTCTTGAGG-AGTTGGATCTCGGGAACGT 2819
||||||||||||||||||| |||||||||||||||||||| | | |||| ||||||||||
Sbjct 2758 TACACCTTGCCTCAAAACACTGCTCTCATCACTCTTGAGGGAAT-GGATTTCGGGAACGT 2816
Query 2820 CCTTCTTCGCCTGGCTCATCTCTACGAGGCGGGAGAAGACAGTGATTACTCTAAAATCGC 2879
|||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| |||
Sbjct 2817 CCTTGTTCGCCTGGCTCATCTCTACGAGGCTGGAGAAGACAGTGATTACTCGAAAACCGC 2876
Query 2880 TAAAGTTGAGTTGAAGAAGTTGTTTTCCGGCAAAATGATCAAAGAAGTGACGGAAATGAG 2939
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 2877 TAAAGTTGAGCTGAAGAAGCTGTTTTCCGGGAAAATGATCAAAGAAGTGACGGAAATGAG 2936
Query 2940 TTTGTCAGCAAATCAAGAGAAAGTAAAGATGAAGGAGAAGATGAAGTGGAAAGTGGAGGG 2999
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2937 TTTGTCAGGAAATCAAGAGAAAGCGAAGATGAAAGAGAAGATGAAGTGGAAAGTGGAGGG 2996
Query 3000 TGAAGCGGAACAACCTTCTTCCCCGCTAAGAGGCGGACCCGTTGACAAGTCGACTTTAGT 3059
|||||||||| || |||||||||||| |||||| ||| ||||||||||||||||||||||
Sbjct 2997 TGAAGCGGAAGAAGCTTCTTCCCCGCAAAGAGGGGGAGCCGTTGACAAGTCGACTTTAGT 3056
Query 3060 AGTAGAGCTTGGTCCCATGGAGATTCGTACATTTGTGGTTCAGTTTTATCAGAAACAACG 3119
||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 3057 AGTAGAGCTTGGTCCAATGGAGATTCGTACATTTGTGGTTGAGTTTTCTCAGAAACAACG 3116
Query 3120 AAGAAGAA-A--GTTGTTTGTGGGATGA 3144
|||||||| | ||||||||||||||||
Sbjct 3117 AAGAAGAAGAAAGTTGTTTGTGGGATGA 3144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118765383910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5