BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66160.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497000 jgi|Araly1|497000|fgenesh2_kg.8__2816__AT5G66160.1 1762 0.0
> Ahg497000 jgi|Araly1|497000|fgenesh2_kg.8__2816__AT5G66160.1
Length=1506
Score = 1762 bits (954), Expect = 0.0
Identities = 1139/1223 (93%), Gaps = 33/1223 (3%)
Strand=Plus/Plus
Query 33 GGTGAAGAAACCAATGCATTTCGGCGACAGCCTGAAACTGAAAAGCCATCGATCGACCGA 92
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 GGTGAAGAAACCAATGCATTTCGGCGACCGCCGGAAACTGAAAAGCCATCGATCGACCGA 60
Query 93 GAAAGCGAAAAGAGAGAGAGATGAGACTCGTCGTCTCAAGCTGTCTACTAGTTGCAGCTC 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAGCGAAAAGAGAGAGAGATGAGACTCGTCGTCTCAAGCTGTCTACTAGTTGCAGCTC 120
Query 153 CTTTTCTCTCCTCTCTGTTACGAGTCTCACTCGCCACTGTTGTCCTCAATTCCATCTCCG 212
|||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTTCTCTCTTCACTGTTACAAGTTTCACTCGCCACTGTTGTCCTCAATTCCATCTCCG 180
Query 213 CCTCTTTTGCCGATCTCCCAGCCAAATTTGACGGCTCCGTGACCAAAAACGGAATCTGTG 272
||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct 181 CCTCTTTTGCCGATCTCCCTGCTAAATTTGACGGCTCCGTAACCAAAAACGGAATCTGTG 240
Query 273 GAGCTCTATACGTCGCAGATCCTCTCGACGGTTGCTCACCGCTTCTCCACGCCGCCGCAT 332
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 GAGCTCTGTACGTCGCAGATCCTCTCGACGGTTGCTCACCGCTGCTCCACGCCGCCGCAT 300
Query 333 CCAACTGGACGCAACACAGAACTACTAAGTTCGCTTTGATAATCAGAGGCGAATGTTCTT 392
|||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 301 CCAACTGGACACAACAGAGAACCACTAAGTTCGCTTTGATAATCCGAGGCGAATGTTCTT 360
Query 393 TTGAGGATAAGCTGCTCAATGCCCAGAACTCAGGTTTTCAAGCTGTGATTGTCTATGACA 452
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 361 TTGAGGATAAGCTCCTCAATGCACAGAAGTCAGGTTTTCAAGCTGTGATTGTCTATGACA 420
Query 453 ACATTGACAACGAAGATCTCATCGTCATGAAGGTGAACCCTCAGGACATTACAGTTGATG 512
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 421 ACATTGACAACGAAGATCTCATCGTTATGAAGGTGAACCCTCAGGACATTACGGTTGATG 480
Query 513 CAGTCTTCGTTTCAAATGTCGCCGGTGAGATTTTGAGAAAGTACGCGAGAGGCCGAGATG 572
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 481 CAGTCTTCGTTTCGAATGTCGCCGGTGGGATTTTGAGAAAGTACGCGAGAGGCCGAGAGG 540
Query 573 GTGAATGCTGCCTTAATCCGCCAGAC-AGAGGGAGCGCTTGGACTGTGTTGGCCATCTCC 631
|||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||
Sbjct 541 GTGAATGCTGCCTTTATCCGCCA-ACCAAAGGGAGCGCTTGGACTGTGTTGGCCATCTCA 599
Query 632 TTCTTCTCTCTCCTTCTTATAGTCACTTTCCTGTTGATTGCCTTCTTTGCACCCAGACAC 691
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCTTCTCTCTCCTTCTCATTGTCACTTTCCTGTTGATTGCCTTCTTTGCACCCAGACAC 659
Query 692 TGGACCCAATGGCGAGGGAGGCACACCAGGACCATCAGGTTAGATGCAAAGCTCGTCCAC 751
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TGGACCCAATGGCGAGGGAGGCACAACAGGACCATCAGGTTAGATGCAAAGCTCGTCCAC 719
Query 752 ACACTCCCCTGCTTCACCTTCACTGATTCTGCTCACCACAAGGCCGGGGAAACATGTGCT 811
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 ACTCTCCCCTGCTTCACCTTCACTGATTCTGCTCACCACAAGGCCGGAGAAACATGTGCT 779
Query 812 ATATGTCTCGAGGATTACAGATTTGGAGAAAGCCTCAGACTTCTCCCCTGCCAACATGCT 871
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATATGTCTCGAGGATTATAGATTTGGAGAAAGCCTCAGACTTCTCCCCTGCCAACATGCT 839
Query 872 TTTCACTTGAATTGCATCGACTCTTGGTTGACAAAATGGGGTACATCTTGCCCTGTGTGC 931
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TTTCACTTGAGTTGCATCGACTCTTGGTTGACAAAATGGGGTACATCTTGCCCAGTGTGC 899
Query 932 AAGCATGACATAAGAACCGAGACTATGTCTTCTGAGGTACATAAACGAGAGAGTCCGAGA 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 AAGCATGACATAAGAACCGAGACTATGTCTTCTGAGGTACATAAACGAGAGAGTCTGAGA 959
Query 992 ACAGATACAAGTACGAGTAGATTTGCCTTTGCCCAATCCAGTCAAAGCCGTTAGAGTTAT 1051
||||||||||||| || | || ||||||| |||||||||||||||| ||||| | |
Sbjct 960 ACAGATACAAGTA-GA-T---TTA-CCTTTGCTCAATCCAGTCAAAGCCATTAGA-T-A- 1010
Query 1052 TATCGGCTTAGCAGCTGAACACTCATATCAGTGCTCGGTTACCTGGATCAGGTCCAGGTT 1111
| | ||| ||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1011 ----G-C--AGC---TGAACACACATATCAGTGCTCGGTTACGTGGATCAGGTCCAGGTT 1060
Query 1112 TGCATCTTATATTGAATGGTTAATCATGGTGGGATAAGTTTAGGTAAAGGGACCGGATCT 1171
||||| |||||||||||||||||||||||||||||||| ||||||||| ||| |||| |
Sbjct 1061 CGCATCCTATATTGAATGGTTAATCATGGTGGGATAAGTATAGGTAAAGTGACTGGATTT 1120
Query 1172 GCCATACTGGTCGTGCTTTGCTGGATTCCCAGATCAAAAAGATATGAGTTGCTTTGCCTC 1231
|||||| | | | | | | | |||||||||||| ||||| ||||||||||||| |
Sbjct 1121 GCCATA--G-T-G-G-T---C-G--TTCCCAGATCAATAAGATCTGAGTTGCTTTGCTTG 1168
Query 1232 TTTTTCTTTGCATGTGTACATTT 1254
|| ||||||||||||||||||||
Sbjct 1169 TTGTTCTTTGCATGTGTACATTT 1191
Score = 270 bits (146), Expect = 2e-71
Identities = 225/260 (87%), Gaps = 17/260 (7%)
Strand=Plus/Plus
Query 1355 TAGAAAACAAATG-TTGGTCTAATCAGATTTTCTCTCTCCGATCCAGGCAAATCTCTAAT 1413
||| ||| ||||| ||| |||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1249 TAG-AAA-AAATGTTTGATCTAATGAGATTTTCTCTCTCCGATCCAGGCAAATCTTTAAT 1306
Query 1414 GTTA-TCTTGTTGAT---AA------TTTCTTTGCCTAAAGTTTGTATAATATGAATATT 1463
| || |||||||||| || |||||||| |||||||||||||||| | ||||||
Sbjct 1307 GGTAATCTTGTTGATTTTAAAGGGGATTTCTTTGTCTAAAGTTTGTATAATTTAAATATT 1366
Query 1464 GAATCTGATTCCCTTACATGGGGGAATGGAATCCATTGAACGTGGCTTTGATTTTGTCTT 1523
||||| || |||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 1367 GAATCCGAGTCCCTTACATTGGGGAATGGAATCCATTGAAGGTGGCTTTGATTTTATCTT 1426
Query 1524 GTCTGTAGTAATAATAAG-AAAA--GAACACGTCATCCTCATCTCTACCTAACGA-CTCA 1579
||| |||||||||||| |||| |||||||||||||||||||| |||||||| ||||
Sbjct 1427 GTCCATAGTAATAATAAATAAAAAAGAACACGTCATCCTCATCTCCACCTAACGGTCTCA 1486
Query 1580 TCCAATACGATGACTCGTTC 1599
|||||||||| |||||||||
Sbjct 1487 TCCAATACGAAGACTCGTTC 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5