BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66180.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496995 jgi|Araly1|496995|fgenesh2_kg.8__2811__AT5G66180.1 1882 0.0
Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 261 1e-68
> Ahg496995 jgi|Araly1|496995|fgenesh2_kg.8__2811__AT5G66180.1
Length=1222
Score = 1882 bits (1019), Expect = 0.0
Identities = 1164/1233 (94%), Gaps = 13/1233 (1%)
Strand=Plus/Plus
Query 15 ATGGAAGAAACGTCCAAGCTACAGTTACCGGAGAGTTTCCTTAGCTTTCTAGAGGCGAAT 74
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||| |||
Sbjct 1 ATGGAAGAAACGTCGAAGCTACAGTTACCGGCGACTTTCCTTAGCTTTCTAGAGGCTAAT 60
Query 75 GGCCTTGATCCTTCAATCTATACTCACGGAGATTCAATTCCACGTTATGTAAGGTTGAAA 134
||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||
Sbjct 61 GGCCTAGATCCTTCAATCTATACTCACGGAAATTCCATTCCACGCTATGTAAGGTTGAAA 120
Query 135 CCTGGATTCGAGGATGCTTTCGAAGAGATTGAATCCGAAATTAACTGTAAACTGGAGAAG 194
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 121 CCTGGGTTCGAGGATGCTTTCGAAGAGATTGAATCCCAAATTAACTGTAAACTGGACAAG 180
Query 195 GTGAATTGGTTACCAGGATTTTACTCCATCCCTCCAGATGTTCATATAGCCAGAACCAAG 254
||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |||||
Sbjct 181 GTGAATTGGTTACCAGGTTTTTACTCTATCCCTCCACATGTTCATATAGCCAGATCCAAG 240
Query 255 GCCTATCAGCAAGGCATGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 314
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCGTATCAGCAAGGCACGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCT 300
Query 315 CTTGGTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 374
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGCTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTA 360
Query 375 TGTATGATGCTTGACCTACTGGGTCAGAAGGGTACTGCCACCGGTGTCGATGTTGCAAGG 434
||||||||||||||||| || ||| | ||||| |||||||| ||||||||||||||||||
Sbjct 361 TGTATGATGCTTGACCTGCTCGGTGACAAGGGCACTGCCACTGGTGTCGATGTTGCAAGG 420
Query 435 CATCGTCTTGCTGCCTGCAGAACTATGCTTCT-AAAGTATGGGCTTGCTGAAAGGAGCCG 493
||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||
Sbjct 421 CATCGTCTTGCTGCCTGCACAACTATGCTTCTCAAA-TATGGGCTTGCTGAAAGGACCCG 479
Query 494 GCTTTTTCTTGCTGATGGAACCACTTTCTCAGTCCCACCAACCAGAAACCTACCATGTGA 553
|||||||||||||||||||||||||||||||| |||||||||| |||||| |
Sbjct 480 TCTTTTTCTTGCTGATGGAACCACTTTCTCAGTGCCACCAACCACTAACCTA-C------ 532
Query 554 GTCATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 --CATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAA 590
Query 614 AGAAAGGAAACAAGAAGCTAAGGCAAGGAAGAATTCTGTTTTGCCGCAGAATGGACAGGC 673
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 591 AGAAAGGAAACAAGAAGCTAAGGCCAGGAAGAATTCTGTTTTGCCGCAGAATGGGCAGCC 650
Query 674 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTAAAAAAGAATG-AACTTT 732
|||||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||
Sbjct 651 AGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTTACAAAGAA-GCAACTTT 709
Query 733 ATAGATCCCTTGACCAAAATGATTATGCATCTTATGGGTATGATAAGGTTCTTGTGGACG 792
||||||||||||||||| |||||||||||| || ||||||||||||||||||||| ||||
Sbjct 710 ATAGATCCCTTGACCAAGATGATTATGCATATTGTGGGTATGATAAGGTTCTTGTAGACG 769
Query 793 CAGAGTGCACACACGATGGTTCGATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 852
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 770 CAGAGTGCACACACGATGGTTCAATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGA 829
Query 853 AAACTCTGGAACGCCGTGTTCTGGATGCTGAGAGAACCGATACAAACTTAAAAGCTCTTC 912
|||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||
Sbjct 830 CAACTCTGGAACGCCGTGTACTGGATGCTGAGAGAACCGATAGAAACTTATCAGCTCTTC 889
Query 913 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACTCTAGTGTACA 972
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 890 AGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACCCTAGTGTACA 949
Query 973 GCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTTCTGAAA 1032
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 950 GCACTTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTGCTGAAA 1009
Query 1033 ATTTCTCTGCAGAGCTACAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1092
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ATTCCTCTGCAGAGCTAGAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTC 1069
Query 1093 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTG 1129
Query 1153 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTGTTGTGATACCTCGCTC 1212
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1130 CAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTTTTGTGATACCTCACTC 1189
Query 1213 AAAAGGGTCGTTCGGTTGATGACTTTACTGAAA 1245
|||| ||||||| ||||||||||| |||| |||
Sbjct 1190 AAAAAGGTCGTTAGGTTGATGACTCTACTTAAA 1222
> Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1
Length=1446
Score = 261 bits (141), Expect = 1e-68
Identities = 155/162 (96%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1276 GAAAAACATATTTCACAAAACTCACTATATTGTTGCAAGAAATATAACATGAACAACAAG 1335
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 GAAAAACATAAATCACAAAACTCACTATATTGTTGCAAGAAATATAACATGAACAACAAG 1387
Query 1336 TGAGAAAGAGTAGTTTGGTGGTATTGATGCTCTCTTTTGAATGTTTTGATTGAAAATCCT 1395
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1386 TGAGAAAGAGTAGTTTGATGGTATTGATGCTCTCTTTTGAATGTTTTGATGGAAAATCCT 1327
Query 1396 TGAGAAAGAAAAAAGAAGCAGATATGAAGATTTCACAATGCA 1437
|||||||||| ||||||||| | |||||||||||||||||||
Sbjct 1326 TGAGAAAGAAGAAAGAAGCATAAATGAAGATTTCACAATGCA 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5