BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66190.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1 2255 0.0
> Ahg496993 jgi|Araly1|496993|fgenesh2_kg.8__2809__AT5G66190.1
Length=1446
Score = 2255 bits (1221), Expect = 0.0
Identities = 1401/1481 (95%), Gaps = 39/1481 (3%)
Strand=Plus/Plus
Query 4 AATAACTTATCCTCTCTAACACTTGGCCTCACATTGCCCTTCACACAATCCACACACATC 63
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 AATAACTTATCCTGTGTAACACTTGGCCTCGCATTGCCCTTCACACAATCCACACACATC 60
Query 64 CAATCACAACCTCATCATATATCTCCCGCTAATCtttttttctttgatcttttttttttt 123
|||||||||||||||||||||||||||||||| | |||||| | || |||||
Sbjct 61 CAATCACAACCTCATCATATATCTCCCGCTAA-C-CTTTTTC--T--TC------TTTTT 108
Query 124 gcttattatttttttGACTTTGATCTCCCATCAGTTCAtcttcttcttcttcttctGATC 183
|| || ||||||||||||||||| ||| | || |||||||||||
Sbjct 109 --TT-TT-TTTTTTTGACTTTGATC-GCCA-C----CA----------GTTCTTCTGATC 148
Query 184 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AACCATGGCTGCTGCTATAAGTGCTGCAGTCTCTTTACCTTCCTCCAAGTCATCCTCTCT 208
Query 244 CCTCACCAAAATCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACAGTGTG 303
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 209 CCCCACCAAAACCTCCTCTGTATCCCCTCAAAGGATTTTCCTCAAGAAGAGCACACTGTG 268
Query 304 TTAC---AGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TTACAGGAGAAGAGTTGTGTCAGTGAAGGCTCAGGTGACAACAGATACTACCGAGGCACC 328
Query 361 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ACCAGTTAAAGTAGTCAAGGAGTCTAAGAAACAGGAAGAAGGGATTGTTGTCAACAAATT 388
Query 421 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTTTTGAACACCAAGATCACCGGTGATGA 480
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 389 CAAACCTAAGAACCCTTACACTGGTCGCTGCCTCTTGAACACCAAGATCACCGGCGATGA 448
Query 481 CGCTCCCGGTGAGACTTGGCACATTGTCTTCACCACCGAAGGTGAGGTTCCGTATAGAGA 540
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 449 CGCTCCCGGTGAGACCTGGCACATTGTCTTCACCACCCAAGGTGAGATTCCGTATAGAGA 508
Query 541 AGGACAATCGATAGGAGTGATTCCAGAGGGAATAGACAAGAACGGGAAGCCGCACAAGCT 600
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 509 AGGGCAATCGATCGGAGTGATTCCTGAGGGAATTGACAAGAACGGGAAGCCGCACAAGCT 568
Query 601 CAGGCTTTACTCTATCGCGAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 660
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CAGGCTTTACTCTATCGCCAGTAGTGCCATTGGTGACTTTGGAGACTCCAAGACCGTTTC 628
Query 661 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATGGCGGAGAGATTGTTAAGGGGGTCTG 720
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 629 TCTCTGTGTCAAGAGACTAGTTTACACAAATGATAGCGGAGAGATTGTTAAGGGGGTCTG 688
Query 721 CTCCAACTTCTTGTGTGACTTGAAGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 780
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 689 CTCCAACTTCTTGTGTGACTTGAGGCCGGGTGATGAAGCTAAGATCACTGGACCTGTTGG 748
Query 781 CAAGGAAATGCTTATGCCAAAAGACCCCAATGCCACCATCATCATGCTTGGAACAGGAAC 840
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 749 GAAGGAAATGCTTATGCCAAAAGACCCTAATGCCACCATCATCATGCTTGGAACAGGAAC 808
Query 841 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGGAGCACGAGGACTA 900
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 809 TGGAATAGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTCGAGGAACACGAGGACTA 868
Query 901 CAAGTTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATA 960
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 869 CAAGTTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTACCCACAAGCAGCTCTCTGCTATA 928
Query 961 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 CAAGGAGGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTTGC 988
Query 1021 GGTGAGCAGAGAGCAGACGAACGAGAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1080
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 989 GGTGAGCAGAGAACAGACGAACGACAAGGGAGAGAAAATGTACATTCAGACAAGAATGGC 1048
Query 1081 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 AGAGTATGCAGAAGAGCTGTGGGAGTTGCTGAAGAAAGACAACACCTTTGTTTACATGTG 1108
Query 1141 TGGTCTTAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCGCTTGCTGCTAAAGA 1200
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1109 TGGTCTGAAGGGTATGGAGAAGGGTATCGATGACATTATGGTCTCACTTGCTGCTAAAGA 1168
Query 1201 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAACAGTGGAATGTTGA 1260
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1169 TGGGATCGATTGGTTGGAGTACAAGAAGCAATTGAAGAGGAGTGAGCAGTGGAATGTTGA 1228
Query 1261 AGTCTACTAAGGAAG-CTTCTGAGGGAGTAATTATATAATGTAGATAAAAAGCTTCTGAT 1319
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1229 AGTCTACTAAGGAAGGCTTCTGAGGGAGTTATTATATAATGTAGATAAAAAGCT---GAT 1285
Query 1320 GCATTGTGAAATCTTCATATCTGCTTCTTTTTTCTTTCTCAAGGATTTTCAATCAAAACA 1379
|||||||||||||||||| | ||||||||| ||||||||||||||||||| |||||||||
Sbjct 1286 GCATTGTGAAATCTTCATTTATGCTTCTTTCTTCTTTCTCAAGGATTTTCCATCAAAACA 1345
Query 1380 TTCAAAAGAGAGCATCAATACCACCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1346 TTCAAAAGAGAGCATCAATACCATCAAACTACTCTTTCTCACTTGTTGTTCATGTTATAT 1405
Query 1440 TTCTTGCAACAATATAGTGAGTTTTGTGAAATATGTTTTTC 1480
||||||||||||||||||||||||||||| ||||||||||
Sbjct 1406 TTCTTGCAACAATATAGTGAGTTTTGTGATTTATGTTTTTC 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5