BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66200.1
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951624 jgi|Araly1|951624|scaffold_803511.1 3131 0.0
> Ahg951624 jgi|Araly1|951624|scaffold_803511.1
Length=1999
Score = 3131 bits (1695), Expect = 0.0
Identities = 1901/2001 (95%), Gaps = 12/2001 (1%)
Strand=Plus/Plus
Query 199 CCATTTGATCTGATATCGACGATGGCAGACATCGTCAAGCAAATCCTAGCGAAGCCGATT 258
||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1 CCA-TTGATCTGATCTCGACGATGGCGGACATCGTCAAGCAAATCCTAGCGAAGCCCATT 59
Query 259 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAAGAGTGC 318
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 CAACTGTCTGACCAGGTGGTCAAAGCCGCCGATGAGGCTAGTTCCTTCAAGCAGGAGTGC 119
Query 319 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGCGCC 378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 120 GGCGAACTCAAGGCTAAGACCGAGAAGCTCGCCGGTCTTCTCCGTCAGGCTGCCCGTGCC 179
Query 379 AGCAACGACCTTTACGAGCGACCCACTCGCCGTATCATCGACGACACGGAGCAGATGCTT 438
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 180 AGCAACGACCTCTACGAGCGACCCACTCGCCGTATCATTGATGACACGGAGCAGATGCTT 239
Query 439 GAGAAGGCTCTCTCCCTTGT-CTTAAAGTGCCGAGCCAATGGCCTCATGAAGCGAGTTTT 497
|||||||||||||| || || ||| ||||||||||||||||||||||||||||| || ||
Sbjct 240 GAGAAGGCTCTCTCTCTCGTCCTT-AAGTGCCGAGCCAATGGCCTCATGAAGCGCGTCTT 298
Query 498 CACCATCATCCCCGCCGCCGCGTTCCGGAAGATGTCTGGTCAGTTGGAGAACTCTATCGG 557
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 299 CACCATCATCCCCGCCGCCGCGTTCCGCAAGATGTCTGCTCAGTTGGAGAACTCTATCGG 358
Query 558 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGACGTTTCCTGGCTCCTCCGTGTCTCCGCTCCGGCGGAAGACCGTGGTGACGCTGGCTA 418
Query 618 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTTGGTCTTCCACCAATCGCCGCCAACGAACCCATCCTTTGCCTGATCTGGGAGCAGAT 478
Query 678 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCTGATGCCGCCGCCTCGCTGGTATC 737
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 479 TGCCATTCTCTACACCGGATCGCTTGAAGACCGCTCCGATGCCGCCGCCTCGCTGGTATC 538
Query 738 TCTGGCCCGTGACAACGATCGCTACACGAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 797
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 GCTGGCCCGTGACAACGATCGCTACACTAAGCTTATCATAGAGGAAGGAGGTGTGGTGCC 598
Query 798 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCAGCGCGTGCGTT 857
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 TCTCCTTAAACTGCTCAAGGAAGGGAAGCCCGAGGGGCAAGAGAACGCCGCGCGTGCGTT 658
Query 858 AGGGTTACTGGGACGTGATCCTGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 917
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGGTTACTGGGCCGTGATCCGGAGAGCGTGGAGCACATGATTCACGGCGGCGCTTGTTC 718
Query 918 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCTATGAAAGTCCAGGCGGTGGTTGCGTGGGC 977
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 719 CGTCTTCGGCAAAGTCCTCAAAGAAGGGCCGATGAAAGTCCAGGCGGTTGTTGCGTGGGC 778
Query 978 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAACGC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 TACGTCGGAGCTTGTGTCCAATCACCCCAAGTGCCAAGACGTCTTCGCTCAGCACAATGC 838
Query 1038 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACCGTGCAAGAGCACAGCAAATACGC 1097
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 839 CATTCGGCTACTCGTTGGCCACTTGGCCTTCGAAACGGTGCAAGAGCACAGCAAATACGC 898
Query 1098 CATTGCCACCAACAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 1157
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CATTGCCACCACCAACAAAGCTACTTCCATTCACCACGCCGTCGCTCTCGCCAAGGAAAA 958
Query 1158 TCCTAATTCCACCTCC---GCCACCGCCTTGCCCAAGGGTCTTGATGAGGATCAGAGCTC 1214
|||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 959 TCCTAATTCCACCTCCTCCGCCGCCGCCTTGCCCAAGGGCCTTGACGAGGATCAGAGCTC 1018
Query 1215 TATTCCTCATCCTACAGGGAAGCAAATGCCCAATCAGATGCACAATGTGGTCGTCAACAC 1274
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct 1019 GATTCCTCATCCTACAGGGAGGCAAATGCCGAATCAGATGCACAATGTGGTCGTCAATAC 1078
Query 1275 CATGGCGGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1334
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CATGGCTGTTAGGGCAAACCCTCCGAGGAAGTCGACTAGCAACGGTGTGAGCCAGAGTAA 1138
Query 1335 TGGTGTGAAGCAACCTAGCAGTGTACAGCAGCACCAGAATTCGACTTCGAGCGCATCCAA 1394
||| || |||| |||||||| | ||||||||||||||||||| || ||||||||||||||
Sbjct 1139 TGGCGTAAAGCTACCTAGCAATCTACAGCAGCACCAGAATTCAACGTCGAGCGCATCCAA 1198
Query 1395 GACTCGAGAGCTGGAAGACTCAGCCACCAAGTGTCAGATTAAGGCGATGGCCGCGAGAGC 1454
||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |||||
Sbjct 1199 GACTCGAGAGCTGGAAGACGCAGCCACCAAGTGTCAGATTAAGGCAATGGCTGCCAGAGC 1258
Query 1455 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCTGTGGAAGCTGGCGAAAGGCAATTCCACCATCTGCAAAAGCATCACAGAGTCCAGAGC 1318
Query 1515 TCTTCTCTGCTTCGCTGTTCTGATTGAGAAGGGCGACGAGGAGGT-CAGATACAACTCAG 1573
||| ||||||||||||||||||||||| |||||| |||||||||| | ||||||||||||
Sbjct 1319 TCTCCTCTGCTTCGCTGTTCTGATTGACAAGGGCAACGAGGAGGTTC-GATACAACTCAG 1377
Query 1574 CTATGGCGTTGATGGAGATCACCGCCGTTGCAGAGCAGGACGCTGACCTGAGACGTTCCG 1633
|||||||||| |||||||| || | ||||||||||||||||||||| ||||| || ||||
Sbjct 1378 CTATGGCGTTAATGGAGATTACGGGCGTTGCAGAGCAGGACGCTGATCTGAGGCGCTCCG 1437
Query 1634 CGTTCAAGCCCAATTCCCCGGCCTGCAAGGCTGTGGTTGATCAAGTGCTTAGAATCATTG 1693
| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 1438 CATTCAAGCCCAACTCCCCGGCCTGCAAGGCTGTGGTGGATCAAGTGCTTAAAATCATCG 1497
Query 1694 AGATAGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATTGGGAACCTTGCTAGAA 1753
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1498 AGATTGCGGATTCTGAGCTACTCATCCCCTGCATCAGAACCATAGGGAACCTTGCTAGAA 1557
Query 1754 CGTTCAGAGCAACCGAGACACGGATGATCGGGCCTCTGGTGAAGCTTCTGGACGAACGAG 1813
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1558 CTTTCAGAGCAACCGAGACACGGATGATTGGGCCTCTGGTGAAGCTTCTGGACGAAAGAG 1617
Query 1814 AGCCCGAAGTGACAGGGGAAGCTGCGGCTGCCCTCACGAAGTTCGCCTGCACGGCGAATT 1873
||||||||||||||| |||||| || | ||||||||||||||| |||||||||| ||||
Sbjct 1618 AGCCCGAAGTGACAGTGGAAGCCGCAGTTGCCCTCACGAAGTTTGCCTGCACGGATAATT 1677
Query 1874 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATCTGGTTC 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1678 ACTTGCACAAAGATCACTCGAGGGGCATTATAGAAGCTGGAGGGGGCAAACATTTGGTAC 1737
Query 1934 AGTTGGCCTACTTTGGAGAGGGTGGCGTACAGATTCCGGCATTAGAGCTCCTCTGTTACA 1993
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1738 AGTTGGCCTACTTTGGAGAGAGTGGCGTTCAGATTCCGGCATTAGAGCTCCTCTGCTACA 1797
Query 1994 TAGCACTCAATGTCCCAGACAGCGAACAGCTGGCCAAGGACGAGGTTCTGGCAGTGTTGG 2053
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1798 TAGCACTCAATGTTCCGGACAGCGAACAGCTGGCGAAGGACGAGGTTCTGGCAGTGTTGG 1857
Query 2054 AATGGGCTTCGAAGCAGTCATGGGTAACGCAGCTGGAGAGCTTAGAAGCTTTGTTGCAGG 2113
| ||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||
Sbjct 1858 AGTGGGCTTCGAAGCAGTCATGGGTGACCCAGCTGGAGAGATTAGAAGCACTGTTGCAGG 1917
Query 2114 AGGCAAAGAG-AGGACTGGACCTTTACCAG-CAAAGAGGATCAAGGGGTTACAATTTCAA 2171
|||||||||| || |||||||||||||||| ||| ||||||| ||||||| |||||||||
Sbjct 1918 AGGCAAAGAGCAG-ACTGGACCTTTACCAGTCAA-GAGGATCCAGGGGTTTCAATTTCAA 1975
Query 2172 TTGATTCATTATTTCGATTTT 2192
|||||||||| ||||||||||
Sbjct 1976 TTGATTCATTGTTTCGATTTT 1996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89016902565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5