BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66210.2
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496989 jgi|Araly1|496989|fgenesh2_kg.8__2805__AT5G66210.2 2752 0.0
> Ahg496989 jgi|Araly1|496989|fgenesh2_kg.8__2805__AT5G66210.2
Length=2040
Score = 2752 bits (1490), Expect = 0.0
Identities = 1763/1888 (93%), Gaps = 45/1888 (2%)
Strand=Plus/Plus
Query 78 GAGCCATGGGTGTCTGTTTCTCCGCCATTAGAGTCACTGGTGCTAGCAGCAGTAGACGAA 137
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 173 GAGCCATGGGTGTCTGTTTCTCCGCCATCAGAGTCACTGGTGCCAGCAGCAGTAGACCAA 232
Query 138 GCAGTCAG-------A--CCAAATCCAAGGCTGCTCCTACTCCCATCGATACCAAGGCCT 188
|||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 233 GCAGTCAGACCAACAACCCCAAATCCAAGGCTGCTCCTTCTCCCATCGAT----A----- 283
Query 189 CTACCAAACGCCGAACCGGCTCCATCCCCTGCGGCAAGCGTACCGATTTTGGCTACTCCA 248
| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 284 --A-CAAGCGCCGAACCGGCTCCATCCCCTGCGGCAAGCGTACTGATTTTGGTTACGCCA 340
Query 249 AAGACTTCCACGATCACTACACCATCGGCAAGTTGCTCGGCCATGGTCAATTCGGCTACA 308
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 341 AAGACTTCCACGACCACTACACCATCGGCAAATTGCTCGGCCATGGTCAATTCGGCTACA 400
Query 309 CCTACGTCGCCATCCACAGACCCAATGGAGATCGCGTCGCCGTCAAAAGACTCGATAAGT 368
|||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 401 CCTACGTCGCCATCCACAAACCCAATGGAGATCGCGTCGCCGTTAAGAGACTCGATAAGA 460
Query 369 CTAAGATGGTTCTTCCTATTGCTGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATTG 428
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 461 CTAAGATGGTTCTTCCTATTGCGGTTGAGGATGTCAAGCGTGAGGTTCAGATTCTTATAG 520
Query 429 CTCTCTCTGGCCACGAGAATGTTGTTCAGTTTCACAATGCCTTTGAGGATGACGATTACG 488
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 521 CTCTTTCTGGCCACGAGAATGTTGTTCAGTTTTACAATGCCTTTGAGGATGACGATTACG 580
Query 489 TCTATATTGTTATGGAGTTGTGCGAAGGAGGCGAATTGCTGGATAGGATATTATCCAAGA 548
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 TCTATATTGTTATGGAGTTGTGCGAAGGAGGCGAATTGCTGGATAGGATTTTATCCAAGA 640
Query 549 AAGGTAATCGGTACTCCGAGAAAGATGCAGCCGTTGTCGTTAGGCAGATGCTCAAAGTTG 608
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 641 AAGGTAATCGATACTCCGAGAAAGATGCAGCCGTTGTCGTTAGGCAGATGCTCAAAGTCG 700
Query 609 CAGGAGAATGTCATCTACACGGTCTTGTACATAGAGATATGAAACCAGAGAACTTTTTGT 668
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 701 CAGGAGAATGCCATCTTCATGGTCTTGTACATAGAGATATGAAACCAGAGAACTTTTTGT 760
Query 669 TCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTA 728
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 761 TCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACAGATTTTGGTTTATCGGATTTTA 820
Query 729 TCAAACCAGGGAAAAGGTTCCATGACATTGTTGGTAGCGCCTATTATGTGGCTCCTGAGG 788
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 821 TCAAACCAGGGAAAAGGTTCCATGACATTGTTGGTAGCGCCTATTATGTTGCTCCCGAAG 880
Query 789 TATTAAAGCGCAGATCAGGGCCTGAATCAGATGTATGGAGCATTGGTGTGATTACGTATA 848
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 881 TACTAAAGCGCAGATCAGGGCCTGAATCAGATGTGTGGAGCATTGGTGTGATTACGTATA 940
Query 849 TATTACTTTGTGGGAGGCGGCCTTTTTGGGATAGAACTGAAGATGGTATATTTAAAGAGG 908
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 941 TATTACTTTGTGGGAGGCGGCCTTTTTGGGATAGGACAGAAGATGGTATATTTAAGGAGG 1000
Query 909 TTTTAAGAAATAAACCTGACTTCAGCCGTAAACCTTGGGCAACTATAAGTGACAGCGCCA 968
|||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||
Sbjct 1001 TTTTAAGAAAGAAACCTGACTTCAGCCGTAAACCATGGTTAACTATAAGCGACAGCGCCA 1060
Query 969 AAGATTTTGTGAAAAAGTTACTTGTAAAAGACCCACGAGCACGGCTAACTGCTGCACAAG 1028
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AAGATTTTGTGAAAAAGCTACTTGTAAAAGACCCACGAGCACGGCTAACTGCTGCACAAG 1120
Query 1029 CACTATCACATGCGTGGGTTAGAGAAGGCGGGAATGCTACTGATATCCCTGTCGACATTT 1088
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1121 CCCTATCACATGCGTGGGTTAGAGAAGGTGGGAATGCTACTGATATCCCTGTCGATATTT 1180
Query 1089 CAGTTCTGAACAACTTAAGACAATTTGTGAGATACAGCCGTCTAAAGCAATTTGCTTTAA 1148
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CAGTTCTTAACAACTTACGTCAATTTGTGAGATACAGCCGTCTAAAGCAATTTGCTTTAA 1240
Query 1149 GGGCGCTTGCTAGCACACTTGACGAGGCAGAGATCTCTGACCTCAGAGATCAATTTGATG 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GGGCGCTTGCTAGCACACTTGACGAGGCAGAGATCTCTGACCTCAGAGATCAATTTGATG 1300
Query 1209 CGATTGATGTGGATAAAAATGGCGTCATTAGTCTTGAAGAGATGAGACAGGCACTTGCCA 1268
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1301 CGATTGATGTGGATAAAAATGGTGTCATCAGTCTTGAAGAGATGAGACAGGCACTTGCCA 1360
Query 1269 AAGATCTTCCTTGGAAACTGAAAGACTCACGAGTTGCTGAGATCCTTGAAGCGATTGATA 1328
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1361 AAGATCTTCCTTGGAAACTGAAGGATTCACGAGTTGCTGAGATCCTTGAAGCGATTGATA 1420
Query 1329 GCAACACTGATGGGTTAGTGGACTTCACAGAGTTTGTAGCAGCAGCTCTACATGTTCATC 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GCAACACTGATGGGTTAGTGGACTTCACAGAGTTTGTAGCAGCAGCTCTACATGTTCATC 1480
Query 1389 AACTAGAAGAACATGATTCAGAGAAATGGCAGCTAAGGTCAAGAGCAGCTTTTGAGAAAT 1448
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AACTGGAAGAACATGATTCAGAGAAATGGCAGCTAAGGTCAAGAGCAGCTTTTGAGAAAT 1540
Query 1449 TCGACCTAGACAAAGACGGGTACATAACGCCTGAGGAACTTCGAATGCACACGGGGTTAA 1508
| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1541 TTGACATTGACAAAGACGGGTACATAACGCCTGAAGAACTTCGAATGCACACGGGGTTAA 1600
Query 1509 GAGGATCAATAGATCCACTGCTGGATGAAGCAGACATAGACAGAGATGGGAAAATAAGCC 1568
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1601 GAGGATCAATAGATCCACTGCTGGATGAAGCAGACATTGACAGAGATGGGAAAATAAGCC 1660
Query 1569 TGCATGAGTTCAGGAGACTTCTAAGAACAGCGAGCATAAGTTCACAGAGAGCACCAAGCC 1628
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1661 TGCATGAGTTCAGGAGACTTCTAAGAACAGCGAGCATAAGTTCACAGAGAGCTCCAAGTC 1720
Query 1629 CTGCA-GGTCACAGGAATCTTCGATAGTATATACTAGAAGAGGATGATAAGTAAGTAA-T 1686
|| || || |||||||||| ||| ||||||||||||||||||| |||||||||||||| |
Sbjct 1721 CT-CAAGGCCACAGGAATCCTCGGTAGTATATACTAGAAGAGGTTGATAAGTAAGTAAGT 1779
Query 1687 ACTTTGGTTGTTTAAGGCGCAGCAAAAC-AAAGAGAGAAAGTGGAGTGAGAA-TC-CCAT 1743
|||| |||||||||||| ||||| |||| ||||||||||||||||||||||| | ||||
Sbjct 1780 ACTTAGGTTGTTTAAGG-GCAGCCAAACCAAAGAGAGAAAGTGGAGTGAGAACTGTCCAT 1838
Query 1744 TGATGAAATATGAGAGAGCTCTTAAGGTGC-ACTAG-A--TGCAAGAGGACACGTGGCAT 1799
|||||||||| |||||||||||| | | ||||| | || | |||| ||||||| ||
Sbjct 1839 TGATGAAATACGAGAGAGCTCTTCTTCT-CTACTAGTAGATGGAGGAGGCCACGTGGAAT 1897
Query 1800 TCCCTGAATGGGGGACAAATCCAATTTTAAATTTTTAATGGTTGGGCACCA--AAAGAAA 1857
|| |||| |||||| | ||||||| ||||| | ||||||||||||||| |||||||
Sbjct 1898 TCTCTGAGTGGGGGCCGAATCCAAATTTAA-T----AATGGTTGGGCACCACCAAAGAAA 1952
Query 1858 CATAGAGAGCCAGCTGTAATTTCGATTCTATCATATAT-TTTG-TCTGTTTCCATTTTTC 1915
|||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| ||||
Sbjct 1953 CATAGAGAGCCAGCTGTAATTTCGATTCTACCATATATATTTGGTCTGTTTCCATATTTC 2012
Query 1916 TTA-TA-A-TATTCGTTTTGAGAGCACC 1940
||| || | |||||||||||||||||||
Sbjct 2013 TTAGTATAATATTCGTTTTGAGAGCACC 2040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72942819175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5