BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66220.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg918555 jgi|Araly1|918555|Al_scaffold_0008_3306 773 0.0 > Ahg918555 jgi|Araly1|918555|Al_scaffold_0008_3306 Length=672 Score = 773 bits (418), Expect = 0.0 Identities = 613/701 (87%), Gaps = 38/701 (5%) Strand=Plus/Plus Query 1 ATGCCGCTGCCTTCCGTGACGCCACTCCACGTCGACGCATTTACTTTTCCTCCGGCTGTT 60 |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGCCGTTGCCTTCGGTGACTCCACTCCACGTCGACGCATTTACTTTTCCTCTGGCTGTT 60 Query 61 GAGTCGCCCGCTTCCCAC-AAAAGACTTTTCCTCGGTGGTGCAGGGATATGATGGTTTGA 119 |||||||||||||||||| ||||| ||||| | | | | | | ||| || Sbjct 61 GAGTCGCCCGCTTCCCACAAAAAG-CTTTT-C-C-----T-C---G----G-TGG--TG- 100 Query 120 TATTAAAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCCATGGCACT 179 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 101 -----CAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCTATGGCACT 155 Query 180 GCCGTCAATCTCCGCTAAGTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 239 || ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 156 ACCATCACTCTCCGTTAACTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 215 Query 240 TTTCTTCCGCCAACTCGT-CACAGGTGAGTTTGAGAAATTG-GC-AAGGGTGACGATGAA 296 ||||||||| |||||| | ||| || | | | | | ||| | | || | ||| Sbjct 216 TTTCTTCCGTCAACTCTTAAACACGTCA-TAT-ATTACTTGTTCTTTTGTTG-TG-GGAA 271 Query 297 AA-AGAGGTTAACGGGGATACAATACTCGGAGAAAGTAGTAGAAAACTGTGAGGAGATCA 355 || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 272 AAGTGAGGTTAACGGGAATACAATACTCGGAGAAAGTAGTAGAATACTGTGAGGAGATCA 331 Query 356 TGAAAGCGTCAGGGAAATACACAAGATCCGAAGCCAAAGCCATTGACCAATTCTTGATGG 415 |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 332 TGAAAGCGTCGGGGAAATACACAAGATCTGAAGCCAAAGCCATCGACCAATTCTTGATGG 391 Query 416 TCTTCAAAAACCAAGATTTCCCTCCCGGCTCTTCAATCATCTTCGCTATCTGTCCTAAAG 475 |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 392 TCTTCAAAGACCAAGATTTCCCTCCCGGCTCTTCAGTCCTCTTCGCTATCTGTCCTAAAG 451 Query 476 GCTCTCTCACAATTGCATTTTCGAAAGAGG-AGAGAGTCCCGAAAACTGGAAAAGCGGTT 534 ||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 452 GCTCTCTCACAATTGCATTTTCGAAAG-GGCAGAGAGTCCCGGAAACTGGAAAATCGGTA 510 Query 535 ATCAAGAATAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATAGGGAAGAATGGTGTA 594 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 511 ATCAAGAACAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATTGGGAAGAATGGTGTA 570 Query 595 TCCCCTGCGACAAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAAAAAAGAC 654 |||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 571 TCCCCTGCAACCAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAACAAAGAC 630 Query 655 CCGTACAACGAAGCTAACGTCA-ACGTTGCTACAAAAAATT 694 ||| |||| | ||||| || || | ||||||||||| |||| Sbjct 631 CCGCACAATGGAGCTAGCGACACA-GTTGCTACAAAGAATT 670 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5