BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66220.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918555 jgi|Araly1|918555|Al_scaffold_0008_3306 773 0.0
> Ahg918555 jgi|Araly1|918555|Al_scaffold_0008_3306
Length=672
Score = 773 bits (418), Expect = 0.0
Identities = 613/701 (87%), Gaps = 38/701 (5%)
Strand=Plus/Plus
Query 1 ATGCCGCTGCCTTCCGTGACGCCACTCCACGTCGACGCATTTACTTTTCCTCCGGCTGTT 60
|||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGCCGTTGCCTTCGGTGACTCCACTCCACGTCGACGCATTTACTTTTCCTCTGGCTGTT 60
Query 61 GAGTCGCCCGCTTCCCAC-AAAAGACTTTTCCTCGGTGGTGCAGGGATATGATGGTTTGA 119
|||||||||||||||||| ||||| ||||| | | | | | | ||| ||
Sbjct 61 GAGTCGCCCGCTTCCCACAAAAAG-CTTTT-C-C-----T-C---G----G-TGG--TG- 100
Query 120 TATTAAAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCCATGGCACT 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 101 -----CAGGCAAGTTCGTGATTGTGACGGTCATCGGAGTCTACCTTGAAGCTATGGCACT 155
Query 180 GCCGTCAATCTCCGCTAAGTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 239
|| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 156 ACCATCACTCTCCGTTAACTGGAAAGGCAAGAATGCAAAGGAGTTGACGGAATCCGTCCC 215
Query 240 TTTCTTCCGCCAACTCGT-CACAGGTGAGTTTGAGAAATTG-GC-AAGGGTGACGATGAA 296
||||||||| |||||| | ||| || | | | | | ||| | | || | |||
Sbjct 216 TTTCTTCCGTCAACTCTTAAACACGTCA-TAT-ATTACTTGTTCTTTTGTTG-TG-GGAA 271
Query 297 AA-AGAGGTTAACGGGGATACAATACTCGGAGAAAGTAGTAGAAAACTGTGAGGAGATCA 355
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 272 AAGTGAGGTTAACGGGAATACAATACTCGGAGAAAGTAGTAGAATACTGTGAGGAGATCA 331
Query 356 TGAAAGCGTCAGGGAAATACACAAGATCCGAAGCCAAAGCCATTGACCAATTCTTGATGG 415
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 332 TGAAAGCGTCGGGGAAATACACAAGATCTGAAGCCAAAGCCATCGACCAATTCTTGATGG 391
Query 416 TCTTCAAAAACCAAGATTTCCCTCCCGGCTCTTCAATCATCTTCGCTATCTGTCCTAAAG 475
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 392 TCTTCAAAGACCAAGATTTCCCTCCCGGCTCTTCAGTCCTCTTCGCTATCTGTCCTAAAG 451
Query 476 GCTCTCTCACAATTGCATTTTCGAAAGAGG-AGAGAGTCCCGAAAACTGGAAAAGCGGTT 534
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 452 GCTCTCTCACAATTGCATTTTCGAAAG-GGCAGAGAGTCCCGGAAACTGGAAAATCGGTA 510
Query 535 ATCAAGAATAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATAGGGAAGAATGGTGTA 594
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 511 ATCAAGAACAAGTTGTTGGGTGAGGCAGTTCTTGAGTCGATGATTGGGAAGAATGGTGTA 570
Query 595 TCCCCTGCGACAAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAAAAAAGAC 654
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 571 TCCCCTGCAACCAGGAAGAGCCTCGCTGAGAGATTATCTAAGCTGATGAACAACAAAGAC 630
Query 655 CCGTACAACGAAGCTAACGTCA-ACGTTGCTACAAAAAATT 694
||| |||| | ||||| || || | ||||||||||| ||||
Sbjct 631 CCGCACAATGGAGCTAGCGACACA-GTTGCTACAAAGAATT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5