BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66230.1 Length=1367 Score E Sequences producing significant alignments: (Bits) Value Ahg496986 jgi|Araly1|496986|fgenesh2_kg.8__2802__AT5G66230.1 856 0.0 > Ahg496986 jgi|Araly1|496986|fgenesh2_kg.8__2802__AT5G66230.1 Length=1059 Score = 856 bits (463), Expect = 0.0 Identities = 590/649 (91%), Gaps = 17/649 (3%) Strand=Plus/Plus Query 110 GTAAATCGTAATGGAGACACCATCATCGACAAGAAGAGTCACGAGATCTCAGACCCGCTG 169 ||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct 1 GTAAATCATAATGGAGACACCTTCATCGACAAGAAGAGTCACGAGGTCCCAGACCCGCAA 60 Query 170 TGCTATCAATAATCTCTTATCCTCAAAGAAAGCGGATGATTGGTCAGATAAATGTCAATC 229 ||| |||| |||||||||||||||||||||||||||||| | || |||||||||||||| Sbjct 61 TGCCATCACTAATCTCTTATCCTCAAAGAAAGCGGATGA-T--TCCGATAAATGTCAATC 117 Query 230 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCTGCGTTGTTTGACATAACCAACGA 289 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 118 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCAGCGTTATTTGACATAACGAACGA 177 Query 290 CTCACCGATCGTAGGTCTGGCGATGCAGACACCGTCCTCAGGAGTTGTTGGGAAGAGGA- 348 ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 178 CTCGCCGATCGTAGGTCTGGCGATGCAGACACCATCCTCAGGAGTGGTTGGGAAGAGGAG 237 Query 349 -AC-ATGAGCAGAATCAATAACACTCCTGGATCTGGTGAGGCTCTCTTGAGAGGCCAAGT 406 | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 238 GAATATGAGCAGAATCAACAACACTCCTGGATCTGGTGAGGCTCTTTTGAGAGGCCAAGT 297 Query 407 CAAGACTCTCTTGCAGAAGGTTGAGGAAGAAGCAGATCTCACCAAGATTTCGT-TGGAAT 465 |||||| |||||||| |||||||| |||||||||||||||||||||||||| | |||||| Sbjct 298 CAAGACCCTCTTGCAAAAGGTTGAAGAAGAAGCAGATCTCACCAAGATTTC-TATGGAAT 356 Query 466 CTCGTCCTTTCATCCATCTCGTTACTTCTCCCATGGGTCTTCTCGCCCCAACTCCGGCCA 525 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 357 CTCGTCCCTTCATCCATCTCGTTACTTCTCCCATGGGACTTCTCGCCCCAACTCCGGCCA 416 Query 526 ACACCCCCCAAGTTCTTGGTTTCTCAGACGAAGTGCAGGTTGTGATCACTTCTCCGGTAG 585 |||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||| | Sbjct 417 ACACCCCCCAAGTTCTCGATTTCTCTGACGAAGTGCAGATTGTGATCACTTCTCCGGTTG 476 Query 586 TTGCAGGACAATTCAGAGCACCGTCTCAGGTGGTGGAAAGCAACATGTTTGATGAGAAAG 645 |||||||||||||||||||| | |||||||||||||||||| ||| ||||| ||| || | Sbjct 477 TTGCAGGACAATTCAGAGCAGCATCTCAGGTGGTGGAAAGCGACACGTTTGGTGACAAGG 536 Query 646 AAGAAAGCTTGGAGTTAGAGAAGAGCCCGAGCATTACTCGGTCATTGCTTCTGGACTTTA 705 |||| ||| || | |||| ||||||||| |||||||||||||| |||||||||| Sbjct 537 AAGAGAGCCTG-A---AGAG-----CCCGAGCATAACTCGGTCATTGCTGCTGGACTTTA 587 Query 706 GTGATAAATCAGAATTATGGGAGAGCTCAGACTGCTCATCTGTGGTGAC 754 |||||||||||||||||||||||||||||| |||||| |||| |||||| Sbjct 588 GTGATAAATCAGAATTATGGGAGAGCTCAGGCTGCTCCTCTGGGGTGAC 636 Score = 324 bits (175), Expect = 1e-87 Identities = 212/230 (92%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 882 TACGACGAGGAAGAGGAGGAAGAAGAGGGAGGGATTGTGGATGGGTTGTGTGAGGGAATT 941 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 TACGACGAGGAAGAGGAGGAAGAAGAGGGAGGGATTGTGGATGGGTTGTGTGAGGGAATG 724 Query 942 AGGAAGATGAGCGTAGAGACTGACTTTGCAGGGAAACACACTAGATTTGTGTATGACAGT 1001 |||||||| |||||||||||||| |||||||||||||||| | |||||| ||| |||||| Sbjct 725 AGGAAGATTAGCGTAGAGACTGAATTTGCAGGGAAACACATTCGATTTGAGTACGACAGT 784 Query 1002 GAAGATGAAGAGATTGTGGAGGCCAAAGATCAATCTCCAGGAGTGTTGCGTTTGAAAGGC 1061 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| Sbjct 785 GAAGATGAAGAGATTGTGGAGGCCAAAGAGCAATCTCCAGGAGTGCTGCGTTTGGAAGGT 844 Query 1062 TTTCCTACACCGACAGGAAAACATGTCAGATTTGCC-GGTGATGAATGAG 1110 ||||||||||| || |||||||||||| ||||| | || |||||||||| Sbjct 845 TTTCCTACACCAACTGGAAAACATGTCCGATTT-CTTGGCGATGAATGAG 893 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51160954614 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5