BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66230.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496986 jgi|Araly1|496986|fgenesh2_kg.8__2802__AT5G66230.1 856 0.0
> Ahg496986 jgi|Araly1|496986|fgenesh2_kg.8__2802__AT5G66230.1
Length=1059
Score = 856 bits (463), Expect = 0.0
Identities = 590/649 (91%), Gaps = 17/649 (3%)
Strand=Plus/Plus
Query 110 GTAAATCGTAATGGAGACACCATCATCGACAAGAAGAGTCACGAGATCTCAGACCCGCTG 169
||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1 GTAAATCATAATGGAGACACCTTCATCGACAAGAAGAGTCACGAGGTCCCAGACCCGCAA 60
Query 170 TGCTATCAATAATCTCTTATCCTCAAAGAAAGCGGATGATTGGTCAGATAAATGTCAATC 229
||| |||| |||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 61 TGCCATCACTAATCTCTTATCCTCAAAGAAAGCGGATGA-T--TCCGATAAATGTCAATC 117
Query 230 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCTGCGTTGTTTGACATAACCAACGA 289
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 118 GAAGTCGGTACAAAGAAACGGTGCAAAAGACAGGTCAGCGTTATTTGACATAACGAACGA 177
Query 290 CTCACCGATCGTAGGTCTGGCGATGCAGACACCGTCCTCAGGAGTTGTTGGGAAGAGGA- 348
||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 178 CTCGCCGATCGTAGGTCTGGCGATGCAGACACCATCCTCAGGAGTGGTTGGGAAGAGGAG 237
Query 349 -AC-ATGAGCAGAATCAATAACACTCCTGGATCTGGTGAGGCTCTCTTGAGAGGCCAAGT 406
| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 GAATATGAGCAGAATCAACAACACTCCTGGATCTGGTGAGGCTCTTTTGAGAGGCCAAGT 297
Query 407 CAAGACTCTCTTGCAGAAGGTTGAGGAAGAAGCAGATCTCACCAAGATTTCGT-TGGAAT 465
|||||| |||||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 298 CAAGACCCTCTTGCAAAAGGTTGAAGAAGAAGCAGATCTCACCAAGATTTC-TATGGAAT 356
Query 466 CTCGTCCTTTCATCCATCTCGTTACTTCTCCCATGGGTCTTCTCGCCCCAACTCCGGCCA 525
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 CTCGTCCCTTCATCCATCTCGTTACTTCTCCCATGGGACTTCTCGCCCCAACTCCGGCCA 416
Query 526 ACACCCCCCAAGTTCTTGGTTTCTCAGACGAAGTGCAGGTTGTGATCACTTCTCCGGTAG 585
|||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||| |
Sbjct 417 ACACCCCCCAAGTTCTCGATTTCTCTGACGAAGTGCAGATTGTGATCACTTCTCCGGTTG 476
Query 586 TTGCAGGACAATTCAGAGCACCGTCTCAGGTGGTGGAAAGCAACATGTTTGATGAGAAAG 645
|||||||||||||||||||| | |||||||||||||||||| ||| ||||| ||| || |
Sbjct 477 TTGCAGGACAATTCAGAGCAGCATCTCAGGTGGTGGAAAGCGACACGTTTGGTGACAAGG 536
Query 646 AAGAAAGCTTGGAGTTAGAGAAGAGCCCGAGCATTACTCGGTCATTGCTTCTGGACTTTA 705
|||| ||| || | |||| ||||||||| |||||||||||||| ||||||||||
Sbjct 537 AAGAGAGCCTG-A---AGAG-----CCCGAGCATAACTCGGTCATTGCTGCTGGACTTTA 587
Query 706 GTGATAAATCAGAATTATGGGAGAGCTCAGACTGCTCATCTGTGGTGAC 754
|||||||||||||||||||||||||||||| |||||| |||| ||||||
Sbjct 588 GTGATAAATCAGAATTATGGGAGAGCTCAGGCTGCTCCTCTGGGGTGAC 636
Score = 324 bits (175), Expect = 1e-87
Identities = 212/230 (92%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 882 TACGACGAGGAAGAGGAGGAAGAAGAGGGAGGGATTGTGGATGGGTTGTGTGAGGGAATT 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TACGACGAGGAAGAGGAGGAAGAAGAGGGAGGGATTGTGGATGGGTTGTGTGAGGGAATG 724
Query 942 AGGAAGATGAGCGTAGAGACTGACTTTGCAGGGAAACACACTAGATTTGTGTATGACAGT 1001
|||||||| |||||||||||||| |||||||||||||||| | |||||| ||| ||||||
Sbjct 725 AGGAAGATTAGCGTAGAGACTGAATTTGCAGGGAAACACATTCGATTTGAGTACGACAGT 784
Query 1002 GAAGATGAAGAGATTGTGGAGGCCAAAGATCAATCTCCAGGAGTGTTGCGTTTGAAAGGC 1061
||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct 785 GAAGATGAAGAGATTGTGGAGGCCAAAGAGCAATCTCCAGGAGTGCTGCGTTTGGAAGGT 844
Query 1062 TTTCCTACACCGACAGGAAAACATGTCAGATTTGCC-GGTGATGAATGAG 1110
||||||||||| || |||||||||||| ||||| | || ||||||||||
Sbjct 845 TTTCCTACACCAACTGGAAAACATGTCCGATTT-CTTGGCGATGAATGAG 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5