BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66240.2
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918552 jgi|Araly1|918552|Al_scaffold_0008_3303 1690 0.0
> Ahg918552 jgi|Araly1|918552|Al_scaffold_0008_3303
Length=996
Score = 1690 bits (915), Expect = 0.0
Identities = 969/996 (97%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 145 ATGGTGGAATTTACAGAGAGAGAGGACCGAGTTTCTTTGGAACTCAGCGAAGAAATTATA 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGAATTTACAGAGAGAGAGGACCGAGTTTCTTTGGAACTCAGCGAAGAAATTATA 60
Query 205 CAGAGCATGGAACCTGGCGCCGTTTTCAGAGACTATAATTGCAGGATCAGCTCAATTGAC 264
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAGAGCATGGAACCTGGCGCCGTTTTCAGAGACTATAATTGCAGGATCAGCTCGATTGAC 120
Query 265 TTTCACAAAACTTCGACTTGTATGGTGACAGCTAGCGACGATGACTCAATTCGTCTCTAT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCACAAAACTTCGACTTGTATGGTGACAGCTAGCGACGATGACTCAATTCGTCTCTAT 180
Query 325 GATGTTGCCAGCGCCACATGTCTGAAGACAATTAATAGCAAAAAGTATGGTGTTGATCTT 384
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GATGTTGCCAGCGCCACATGTCTGAAGACAATCAATAGCAAAAAGTATGGTGTTGATCTT 240
Query 385 GTTTGCTTCACTTCTCATCCTACTACTGTCATCTACTCTTCCAGAAACGGATGGGACGAC 444
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTTGCTTCACTTCCCATCCTACTACTGTCATCTACTCTTCCAGAAACGGATGGGACGAT 300
Query 445 TCTCTGAGGCTTCTCTCTTTGCACGATAATAAGTACTTGCGCTACTTCAAAGGACATCAT 504
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TCTCTGAGGCTTCTCTCTTTGCACGATAATAAGTACTTGCGCTACTTCAAAGGCCATCAT 360
Query 505 GACAGAGTTGTTTCGCTTAGCTTGTGTTCTGGTGGGGAATGCTTCATCTCCGGTTCCCTT 564
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GACAGAGTTGTTTCGCTTAGCTTGTGTTCTGGTGGAGAATGCTTCATCTCCGGTTCCCTT 420
Query 565 GATCGTACTGTTTTGCTTTGGGATCAAAGGGTCGAGAAATGCCAGGGTCTCTTACGAGTC 624
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATCGAACTGTTTTGCTTTGGGATCAAAGGGTCGAGAAATGCCAGGGTCTCTTACGAGTC 480
Query 625 CAAGGAAGGCCTGCTGCAGCATATGATGATCAAGGGTTAATTTTTGCAATTGCCTTTGGT 684
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 CAAGGAAGGCCTGCTGCAGCATATGATGATCAAGGGTTAGTTTTTGCAATTGCCTTTGGT 540
Query 685 GGCTACATAAGAATGTTTGATGCCCGTATGTACGAAAAGGGTCCTTTTGAAATATTTTCC 744
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GGCTACATAAGAATGTTTGATGCCCGTATGTATGAAAAGGGTCCTTTTGAAATATTTTCC 600
Query 745 GTTGGTGGTGATCTTTCTGAGGCAAACGTTGTGAAATTTAGTAATGATGGAAGGCTCATG 804
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGGTGGTGATCTCTCTGAAGCAAACGTTGTGAAATTTAGTAATGATGGAAGGCTCATG 660
Query 805 CTGCTTACAACCATGGATGGTTTTATTCATGTGCTTGACTCGTTTCGTGGAACTCTTCTG 864
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CTGCTTACAACCATGGATGGTTTTATTCATGTGCTTGACTCGTTTCGTGGAACACTTCTG 720
Query 865 TCCACATTTAGTGTGAAACCAGTAGCTGGAGAATCTACATTGGATGCAGCCTTTAGTCCT 924
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 721 TCCACATTTAGTGTGAAACCAGTAGCTGCAGAATCTACATTGGATGCAACCTTCAGTCCT 780
Query 925 GAAGGGATGTTTGTTGTTTCAGGTTCAGGTGATGGTAGTACCCATGCATGGGGTGTAAGG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAAGGGATGTTTGTTGTTTCAGGTTCAGGTGATGGTAGTACCCATGCATGGGGTGTAAGG 840
Query 985 AGCGGAAAACAGGTACATAGTTGGATGGGTTTAGGGAGTGAGCCCCCAGTCATTAAATGG 1044
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 841 AGCGGAAAACAGGTACATAGTTGGATGGGTATAGGCAGTGAGCCCCCAGTCATTAAATGG 900
Query 1045 GGTCCAGGAAGTCCCATGTTTGTGACAGGCTCTTCCGAACTTGCTTTTGTTATACCCGAC 1104
| |||||||||||||||||||||||| ||||||| |||||||| |||||||| ||||||
Sbjct 901 GCTCCAGGAAGTCCCATGTTTGTGACCGGCTCTTTGGAACTTGCGTTTGTTATTCCCGAC 960
Query 1105 TTATCGAAATTGCCAGCTTATGCCATTCGGAAATAG 1140
|| || ||| |||||||||||||||| |||||||||
Sbjct 961 TTGTCTAAACTGCCAGCTTATGCCATACGGAAATAG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51840823445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5