BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66250.4 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg496982 jgi|Araly1|496982|fgenesh2_kg.8__2798__AT5G66250.3 1099 0.0 > Ahg496982 jgi|Araly1|496982|fgenesh2_kg.8__2798__AT5G66250.3 Length=1219 Score = 1099 bits (595), Expect = 0.0 Identities = 787/873 (90%), Gaps = 39/873 (4%) Strand=Plus/Plus Query 79 CCAAGTCAACCCGACCCGACTTCGTTCCCATC--GG-T--T-GATCGGCCGGGACCTGAT 132 ||||||||||||||||||||| || || | || || | | |||||||||||||||||| Sbjct 19 CCAAGTCAACCCGACCCGACTGCGGTCTCTTCAGGGTTGATCGATCGGCCGGGACCTGAT 78 Query 133 TGCGTTTAG-C-CTCCCGAAATCTACGGGCAAAGTTGA-----TCCCTCT--G---GTAT 180 ||||||||| | ||||||||||| |||||||||||||| ||||||| | |||| Sbjct 79 TGCGTTTAGCCTCTCCCGAAATCAACGGGCAAAGTTGATCCCCTCCCTCTGGGTTAGTAT 138 Query 181 GGCTGAAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAAGATCACTGAGGATCATCA 240 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 139 GGCTGCAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAATATCACTGAGGAGGATCA 198 Query 241 TGACATCTGGATCCGAGGAGCGATGGAAAAGAGCCGCTCCTCCAACATCAGTGTTCTG-A 299 | || ||||||| | |||| ||||| ||||||||||||| |||||||| ||||| | Sbjct 199 TCACCTCTGGAT--G-CGAGCTATGGATTGGAGCCGCTCCTCCGACATCAGTATTCTGCA 255 Query 300 AGGATAGATTCATAGCTGCTGAGGATTCTGCTCTAGTTTCCAAGGATGTTGCACAAAAGG 359 | || ||||||||||||||||||||||| |||| || | | || ||||||||| Sbjct 256 A-GACAGATTCATAGCTGCTGAGGATTCCGCTC----TT-----G-T-TT-CACAAAAGG 302 Query 360 ATATTGAGATTCTCTTGAGACGAGTGAAAAC-TGCTACAGCTTTATTGACTTACCTGAAA 418 || |||||||||||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 303 ATGTTGAGATTCTCTTGAGACGAGTGAAAACTTG-TACCGCCTTATTGACTTACCTGAAA 361 Query 419 TCTAAAGCGACAACTGTGGCTGCTGCCGATTTGGCCAATCTTTCACTTGAAACTGACCAG 478 ||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||| ||||| Sbjct 362 TCTAAAGCGACTACTGTGGCTGCTGCCGATTTGGCTAATCTATCACTTGGAACTCACCAG 421 Query 479 CTCCAA-GATACAATAGACGAACATGATGGGACTTATGTCACTGAGATGCTTCAGCATGT 537 |||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 422 CTCCAAGGAT-CCATAGACGAACATGACGGGACTTATGTCACTGAGATGCTTCAGCATGT 480 Query 538 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTTTTATCGCCGAATCAGA 597 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 481 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTATCATCGCCGAATCAGA 540 Query 598 AGCCGCTATCGAGAAAGGAAAGGTTGTGCTAAGCCAAGAGGAAATTCAAAGAAAGGTTGG 657 |||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 541 AGCCGCAATCGAGAAAGGAAAGGTTGTGCTAAGTCAAGAGGAAATTCAAAGAAAAGTTGG 600 Query 658 CCAACTCGAGAACATGTCCGTGAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 717 |||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 601 CCAAATCGAGAACATGTCCCTCAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 660 Query 718 TAGTATTCTCTGTGAAATGCGGCAGAGGGTTGATGATTTGGTTGAAGAGACCTCTAGACA 777 | ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 661 TGGTATTCTCTGTGAAATGCGCCAGAGGGTTGATGATTTGGTCGAAGAGACGTCTAGACA 720 Query 778 GAAGCAAAGAGCTACTGAAAATGAGCTGGAACTCAGTCGCGTCAGGAGAGACTTTGAGTC 837 ||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||| Sbjct 721 GAAGCAAAGAGCTACGGAAAATGAGCAGGAACTCAGTCGTGTCAGGAGAGACTTTGAGTC 780 Query 838 TCTTAAATCGTATGTTACAAGTCTCATTAGCGTCAGAGAAACTCTCGTCTCATCCGAGAA 897 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 781 TCTTAAATCCTATGTTACAAGTCTCATTAGCGTCAGAGAAACACTCGTCTCATCCGAGAA 840 Query 898 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 930 ||||||||||||||||||||||||||||||||| Sbjct 841 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 873 Score = 551 bits (298), Expect = 5e-156 Identities = 333/349 (95%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 991 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 874 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 933 Query 1051 GAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTGGATAAGAAAGAGGCACAGCT 1110 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 934 GAAACTAATGGAAGAGAATGTTAGACTGACGGCTCTTGTGGACAAGAAAGAGGCACAGCT 993 Query 1111 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTTAGAGAT 1170 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 994 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTCAGAGAT 1053 Query 1171 GAATATTGCTCTACTTAATCTTT-CTTCCACTTGTAACATAAAGAAACTCTTATTTGATA 1229 ||| |||||| ||||||||||| ||||||| ||||| ||||||||| |||||||||||| Sbjct 1054 GAAAATTGCT--ACTTAATCTTTTCTTCCACGTGTAATATAAAGAAATTCTTATTTGATA 1111 Query 1230 CAACTTCCATGTTTGTTGATATCCTAAAGGCAACAAAATATTTGTCCTGGAAGACTCTGT 1289 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1112 CAACTTCCACGTTTGTTGATATCCTAAAGGCAACAAAATATTGGTCCTGGAAGACTCTGT 1171 Query 1290 ATGTGATTGTACATTCTTAGCA-CATGAAATTGCGTTATTGTTTGGCTT 1337 ||||||||||||||||| |||| | |||||||||||||| ||||||||| Sbjct 1172 ATGTGATTGTACATTCTCAGCAGC-TGAAATTGCGTTATGGTTTGGCTT 1219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5