BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66250.4
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496982 jgi|Araly1|496982|fgenesh2_kg.8__2798__AT5G66250.3 1099 0.0
> Ahg496982 jgi|Araly1|496982|fgenesh2_kg.8__2798__AT5G66250.3
Length=1219
Score = 1099 bits (595), Expect = 0.0
Identities = 787/873 (90%), Gaps = 39/873 (4%)
Strand=Plus/Plus
Query 79 CCAAGTCAACCCGACCCGACTTCGTTCCCATC--GG-T--T-GATCGGCCGGGACCTGAT 132
||||||||||||||||||||| || || | || || | | ||||||||||||||||||
Sbjct 19 CCAAGTCAACCCGACCCGACTGCGGTCTCTTCAGGGTTGATCGATCGGCCGGGACCTGAT 78
Query 133 TGCGTTTAG-C-CTCCCGAAATCTACGGGCAAAGTTGA-----TCCCTCT--G---GTAT 180
||||||||| | ||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 79 TGCGTTTAGCCTCTCCCGAAATCAACGGGCAAAGTTGATCCCCTCCCTCTGGGTTAGTAT 138
Query 181 GGCTGAAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAAGATCACTGAGGATCATCA 240
||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 139 GGCTGCAAAGGAAGTGGTTTCTGCCTCAACTTTAGAATCTAATATCACTGAGGAGGATCA 198
Query 241 TGACATCTGGATCCGAGGAGCGATGGAAAAGAGCCGCTCCTCCAACATCAGTGTTCTG-A 299
| || ||||||| | |||| ||||| ||||||||||||| |||||||| ||||| |
Sbjct 199 TCACCTCTGGAT--G-CGAGCTATGGATTGGAGCCGCTCCTCCGACATCAGTATTCTGCA 255
Query 300 AGGATAGATTCATAGCTGCTGAGGATTCTGCTCTAGTTTCCAAGGATGTTGCACAAAAGG 359
| || ||||||||||||||||||||||| |||| || | | || |||||||||
Sbjct 256 A-GACAGATTCATAGCTGCTGAGGATTCCGCTC----TT-----G-T-TT-CACAAAAGG 302
Query 360 ATATTGAGATTCTCTTGAGACGAGTGAAAAC-TGCTACAGCTTTATTGACTTACCTGAAA 418
|| |||||||||||||||||||||||||||| || ||| || ||||||||||||||||||
Sbjct 303 ATGTTGAGATTCTCTTGAGACGAGTGAAAACTTG-TACCGCCTTATTGACTTACCTGAAA 361
Query 419 TCTAAAGCGACAACTGTGGCTGCTGCCGATTTGGCCAATCTTTCACTTGAAACTGACCAG 478
||||||||||| ||||||||||||||||||||||| ||||| ||||||| |||| |||||
Sbjct 362 TCTAAAGCGACTACTGTGGCTGCTGCCGATTTGGCTAATCTATCACTTGGAACTCACCAG 421
Query 479 CTCCAA-GATACAATAGACGAACATGATGGGACTTATGTCACTGAGATGCTTCAGCATGT 537
|||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 422 CTCCAAGGAT-CCATAGACGAACATGACGGGACTTATGTCACTGAGATGCTTCAGCATGT 480
Query 538 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTTTTATCGCCGAATCAGA 597
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 481 AGAGACCGTTACAGGCGTCATGGAGTCTCTGGCTAGGCGTGCTATCATCGCCGAATCAGA 540
Query 598 AGCCGCTATCGAGAAAGGAAAGGTTGTGCTAAGCCAAGAGGAAATTCAAAGAAAGGTTGG 657
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 541 AGCCGCAATCGAGAAAGGAAAGGTTGTGCTAAGTCAAGAGGAAATTCAAAGAAAAGTTGG 600
Query 658 CCAACTCGAGAACATGTCCGTGAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 717
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCAAATCGAGAACATGTCCCTCAAGTTAGAGGACATGGAAAAGTTTGCTCTTGGGACCAG 660
Query 718 TAGTATTCTCTGTGAAATGCGGCAGAGGGTTGATGATTTGGTTGAAGAGACCTCTAGACA 777
| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 661 TGGTATTCTCTGTGAAATGCGCCAGAGGGTTGATGATTTGGTCGAAGAGACGTCTAGACA 720
Query 778 GAAGCAAAGAGCTACTGAAAATGAGCTGGAACTCAGTCGCGTCAGGAGAGACTTTGAGTC 837
||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 721 GAAGCAAAGAGCTACGGAAAATGAGCAGGAACTCAGTCGTGTCAGGAGAGACTTTGAGTC 780
Query 838 TCTTAAATCGTATGTTACAAGTCTCATTAGCGTCAGAGAAACTCTCGTCTCATCCGAGAA 897
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 781 TCTTAAATCCTATGTTACAAGTCTCATTAGCGTCAGAGAAACACTCGTCTCATCCGAGAA 840
Query 898 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 930
|||||||||||||||||||||||||||||||||
Sbjct 841 GCAGTTCCAAACAATCGAGAGGCTTTTTGAACG 873
Score = 551 bits (298), Expect = 5e-156
Identities = 333/349 (95%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 991 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GCTTGTTGCAAAGACAACGCAGTTGGAAAGCGAGAAAGTGCAGAAAGAAGCAGAGGTTCA 933
Query 1051 GAAACTAATGGAAGAGAATGTAAGACTGACGGCTCTTGTGGATAAGAAAGAGGCACAGCT 1110
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 934 GAAACTAATGGAAGAGAATGTTAGACTGACGGCTCTTGTGGACAAGAAAGAGGCACAGCT 993
Query 1111 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTTAGAGAT 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 994 TCTGGCCATGAATGAGCAGTGCAAAATGATGGCCCTAAGCTCTATATGATGCTCAGAGAT 1053
Query 1171 GAATATTGCTCTACTTAATCTTT-CTTCCACTTGTAACATAAAGAAACTCTTATTTGATA 1229
||| |||||| ||||||||||| ||||||| ||||| ||||||||| ||||||||||||
Sbjct 1054 GAAAATTGCT--ACTTAATCTTTTCTTCCACGTGTAATATAAAGAAATTCTTATTTGATA 1111
Query 1230 CAACTTCCATGTTTGTTGATATCCTAAAGGCAACAAAATATTTGTCCTGGAAGACTCTGT 1289
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1112 CAACTTCCACGTTTGTTGATATCCTAAAGGCAACAAAATATTGGTCCTGGAAGACTCTGT 1171
Query 1290 ATGTGATTGTACATTCTTAGCA-CATGAAATTGCGTTATTGTTTGGCTT 1337
||||||||||||||||| |||| | |||||||||||||| |||||||||
Sbjct 1172 ATGTGATTGTACATTCTCAGCAGC-TGAAATTGCGTTATGGTTTGGCTT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5