BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66260.1 Length=300 Score E Sequences producing significant alignments: (Bits) Value Ahg918550 jgi|Araly1|918550|Al_scaffold_0008_3301 505 8e-143 > Ahg918550 jgi|Araly1|918550|Al_scaffold_0008_3301 Length=300 Score = 505 bits (273), Expect = 8e-143 Identities = 291/300 (97%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1 ATGGGAGTAGAAAGGGGAAGTGGTAAGGGTCTGAAGCAGATGTTAAAGAGATGTTCGAGT 60 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1 ATGGGAGTAGAAAGGGGAAGTGGTAAGGCTCTGAAGAAGATGTTAAAGAGATGTTCGAGT 60 Query 61 TTAGGGAAGAAGAGCAGCGTCGACGTTAACTTCAACGGCGTCCCCAAAGGTCACTTCGTC 120 || ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 TTGGGGAAGAAGAGCAACGTCGACGTTAACTTTAACGGCGTCCCCAAAGGTCACTTCGTC 120 Query 121 GTCTACGTTGGTCACTCTAGATCCCGACATGTCATCCCCATCTCCTTCCTCACGCACCCC 180 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 GTTTACGTTGGTCACTCTAGATCCCGACACGTCATCCCCATCTCCTTCCTCACGCACCCC 180 Query 181 ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC 240 Query 241 CTAACCATCCCTTGTGATGAACACTTCTTTCGAGCTCTCATTTCCTCCATTAATCCTTAA 300 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 241 CTAACCATCCCTTGTGATGAACACTTCTTTCGATCTCTCATTTCCTCCGTTAATCCTTAA 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10530942564 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5