BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66260.1

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg918550 jgi|Araly1|918550|Al_scaffold_0008_3301                    505    8e-143


> Ahg918550 jgi|Araly1|918550|Al_scaffold_0008_3301
Length=300

 Score =  505 bits (273),  Expect = 8e-143
 Identities = 291/300 (97%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGTAGAAAGGGGAAGTGGTAAGGGTCTGAAGCAGATGTTAAAGAGATGTTCGAGT  60
            |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  1    ATGGGAGTAGAAAGGGGAAGTGGTAAGGCTCTGAAGAAGATGTTAAAGAGATGTTCGAGT  60

Query  61   TTAGGGAAGAAGAGCAGCGTCGACGTTAACTTCAACGGCGTCCCCAAAGGTCACTTCGTC  120
            || ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   TTGGGGAAGAAGAGCAACGTCGACGTTAACTTTAACGGCGTCCCCAAAGGTCACTTCGTC  120

Query  121  GTCTACGTTGGTCACTCTAGATCCCGACATGTCATCCCCATCTCCTTCCTCACGCACCCC  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  GTTTACGTTGGTCACTCTAGATCCCGACACGTCATCCCCATCTCCTTCCTCACGCACCCC  180

Query  181  ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATCTTCCAGATGTTGCTGCAACAGTCTGAGGAAGAGTTTGGGTTCTTTCAAGACAATGGC  240

Query  241  CTAACCATCCCTTGTGATGAACACTTCTTTCGAGCTCTCATTTCCTCCATTAATCCTTAA  300
            ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct  241  CTAACCATCCCTTGTGATGAACACTTCTTTCGATCTCTCATTTCCTCCGTTAATCCTTAA  300



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10530942564


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5