BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66270.1
Length=1841
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496979 jgi|Araly1|496979|fgenesh2_kg.8__2795__AT5G66270.1 2137 0.0
> Ahg496979 jgi|Araly1|496979|fgenesh2_kg.8__2795__AT5G66270.1
Length=1675
Score = 2137 bits (1157), Expect = 0.0
Identities = 1488/1643 (91%), Gaps = 41/1643 (2%)
Strand=Plus/Plus
Query 52 AACACAAAACGTATCGCCGACGCCTCTCTTCTTATTCATATCTGTCTTTCTCATTGTCGA 111
|||||||| ||||||||||||| ||||||||||||| | | || ||||||||||||
Sbjct 33 AACACAAAGCGTATCGCCGACG--TCTCTTCTTATTC-CA-C--TC--TCTCATTGTCGA 84
Query 112 GTTTGGTCTAACATCTGATTTCTCGTTTCGTATAGAATCTGAGAAAGTGGTTA-GTGAAT 170
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||| |
Sbjct 85 GTTTGGTCTAACATCTGATTTCTCGTTTCGTGTCGAATCTGAGAAAGTGGTTATTTGATT 144
Query 171 AGACTTTAGAAAGAGTTTGCGATTGAATTTTTGTAAGAG-AA-ATA-GT--A--ATGATG 223
||||||||||| || |||| | |||||| |||| || ||| | | ||||||
Sbjct 145 TGACTTTAGAAA-AG---AAAATTG-A-TTTTGT-AGAGAAATATATATAAAGGATGATG 197
Query 224 AAGAAAACGAAGAAAGGGAGAGTATCGTGGGCATCAGATAGTATGCTTTGTCAGGTAAAG 283
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 198 AAGAAAACGAAGAAATCGAGAGTATCGTGGGCATCAGATAGTATGCTTTGTCAGGTTAAG 257
Query 284 TTGTTTCTTAGTGATGATTGTCCCGTTAAAGTTGCATCGAATCTTCCACCTGGTTTTGAA 343
|||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 258 TTGTTTCTCACTGATGATTGTCCCGCAAAAGTTGCATCGAATCTTCCACCTGGATTTGAA 317
Query 344 GCTACTGATTATGCAACGAAGCGAATCATCTCACACATTCCTCGGATCAAATGGAAACGC 403
|||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 318 GCTACTGAGTATGCAACGAGGCGAATCCTCTCACACATTCCTCGGATCAAATGGAAACGC 377
Query 404 CCACC--A-TTGTTTGTCCTCGATGATGCTTTGCTTGTTGGGAGTGGTGGAAAAAGCATC 460
||||| | ||||||||||| |||||||||||||||| ||| |||||||| | |||| |
Sbjct 378 CCACCAAAGGTGTTTGTCCTCAATGATGCTTTGCTTGTCGGGCGTGGTGGAGAGAGCACC 437
Query 461 GAGACTCGTTCTGAGAATCTTAGGATTTCTAAAGTCTTGGAAGCTTTCTATCCACATCGC 520
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 438 GAGACTCGTACTGAGAATCTCAGGATTTCTAAAGTCTTGGAAGCTTTCTATCCACATCGC 497
Query 521 TCTGTGATCCCTTCTCGTCCTTC-GCTCACACTAGCTGTTGAAGAAGAACACTATGACGA 579
||||| |||||| |||||||||| | || ||| ||||| ||||||| ||||||||||||
Sbjct 498 TCTGTTATCCCTACTCGTCCTTCAG-TCTCACCGGCTGTAGAAGAAGCACACTATGACGA 556
Query 580 CGGCAAAACTCCTAATATCCCTCTCACTCACGTTGAAGATGAACGTGACGCTGCTGCTGA 639
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||
Sbjct 557 CGGCAAAACTCCTAATATCCGTCTCACTCCCGTTGAAGATGAACGTGAGGCTGCTGTTGA 616
Query 640 ATCTTCCCACAGTTTCGAAGCTCCTGCAGCTGTTTCTGGACTTGGACCAGAGTTAAGTCT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 ATCTTCCCACAGTTTCGAAGCTCCTGCAGCTGTTTCTGGACTTGGACCAGAGTTAAGTCT 676
Query 700 TCTTGCTTCTGCAGCTTTGTCTGCCTTAACTAAGGAACA-GGGCTCTCAGGTCGATCCTG 758
||||||| |||||||||||||||| |||||||||||||| ||| | |||||||||| |||
Sbjct 677 TCTTGCTGCTGCAGCTTTGTCTGCGTTAACTAAGGAACAAGGG-TGTCAGGTCGATGCTG 735
Query 759 ATTTACTTGTCAAGTTACTCAGTGACCCCAAAATCGTTGAGAACTTGATCAATGGCATGA 818
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 736 ATTTACTTGTCAAGTTACTCAGTGACCCCAAAATCGTTGAGAGCTTGATCAATGACATGA 795
Query 819 AAGGTAAACCACTTGAAACTGCAAATAACAGTCTAAACACTGACATCACCGAACCTAGAC 878
||||||||||||||||||||||||||||||||| || |||||||| || | |||||||||
Sbjct 796 AAGGTAAACCACTTGAAACTGCAAATAACAGTCGAAGCACTGACACCAACAAACCTAGAC 855
Query 879 TTGCTCCTCAACATGTCACCTCCACAACCATGGACAGAAACCCACCTCCCATGCCTGGAA 938
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 856 TTGCCCCTCAACATGTCACCTCCACAGCCATGGACAGAAACCCACCTCCCATACCTGGAA 915
Query 939 ATGTTGCGCCACATAATGTACCTGTTTCGGTTCAGTCCAGTGCTACAGATCCTCCACTCC 998
|||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 916 ATGTCGTGCCACATAATGTACCTGTTTTTGTTCAGTCCAGTGCTACAGATCCTCCACTCC 975
Query 999 CCAAACCCAATCAGCCCATGTCCAGTGCTCTCTCAATGAACCTTACCCTCCAGAAACCCA 1058
||||||||| |||||||||||| ||| |||| ||| ||||| ||| ||||||||||||||
Sbjct 976 CCAAACCCACTCAGCCCATGTCAAGTACTCTATCAGTGAACGTTAACCTCCAGAAACCCA 1035
Query 1059 CCCCGGTTGTTCACAACTATCCATTGTCTTCTG--GG-ATCAAAGTTGAGGATTCTTACA 1115
||| ||||||||||| ||||||||||||||||| || |||||| |||||||||||||||
Sbjct 1036 CCCTGGTTGTTCACAGCTATCCATTGTCTTCTGCTGGGATCAAACTTGAGGATTCTTACA 1095
Query 1116 CAGCTGCT-C-CC-TTGAAACCAAGCACAGGGGATGATGTTGTAGTCTCAGAACAAAAGA 1172
|||||||| | || |||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 1096 CAGCTGCTGCTCCCTTGAAACCAAGCCCAGTTGATGATGTTGTAGTCTCGGAACAAAAGA 1155
Query 1173 CCCAACTCCTTTTCCCT-TGCAGCTCTTGGAATATGAATAAGGTACCGGAGTCAGCGCGA 1231
||||| ||| || | | | |||| ||||||||||||||| |||||| || |||||| ||
Sbjct 1156 CCCAA-TCCCTTAACATGTCCAGCACTTGGAATATGAATAGGGTACCAGAATCAGCGAGA 1214
Query 1232 ACTGAAACAGATCCTCAAATCCGTAATGGTAACACAAACCGGGATGATCAGGTTTCTGCA 1291
|||||||||||| || |||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1215 ACTGAAACAGATGCTAAAATCCGTAATGGTAACACAAACCAGGATGGTGAGGTTTCTGCA 1274
Query 1292 AAACCCGTGAAAGATCTAGACTACTTCAAGAACCTCATTAGGGAACATGGGGCAGTCAAA 1351
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1275 AAACCCGTGAAAAATCTAGACTACTTCAAGAGCCTCATTAGGGAACATGGGGCAGTCAAA 1334
Query 1352 CCGGCAACAACTGAAACTAACAATTACAAAGGAAGAGTTGATCATAAGAAAATCGTAAAG 1411
|||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1335 CCGGCAACAAATGAAACTAACAATTACAAAGGAAGAGTTGATGATAAGAAAGTAGTAAAG 1394
Query 1412 GTTAGGATTCAGAAACCGTGCATGTATTTTAACAG-GCCCAAGGGGTGTCGGATGGGCGA 1470
|||| |||||||||||||||||||||||||||||| ||| ||||| ||| || | |||||
Sbjct 1395 GTTAAGATTCAGAAACCGTGCATGTATTTTAACAGAGCCAAAGGG-TGTAGGCTCGGCGA 1453
Query 1471 GAGTTGCTTGTATCTTCACGACAGTTCTAAAAGGTTATGGACTGATGTTGCACCTCCTCA 1530
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 1454 GAGTTGCTTGTATCTTCACGACCGCTCTAAAAGGTTGTGGACTGATGTTGCACCTCCTCA 1513
Query 1531 CTTTCCCAGAGCTAAGAGACTCAAGTTTGGATCGTAATACAGCTACGATATGACTCAAAA 1590
|||||||||||||||||||||||||||| ||||||| | ||| || ||| ||||||||
Sbjct 1514 CTTTCCCAGAGCTAAGAGACTCAAGTTTAGATCGTAGCAGAGCAACTATAAAACTCAAAA 1573
Query 1591 TTTAACACCAAGCATGTCTGAAATTATTGGTAAATAGCTTCATCCAAATTCTGATAACTT 1650
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1574 TTTAACCCCAAGCATGTCTGAAAT-ATTGGTAAATAGCTTCATCCAAATTCTGATAAGTT 1632
Query 1651 GTTTAACAAGTTTCCCAAAGTTA 1673
|||||||||||||| ||||||||
Sbjct 1633 GTTTAACAAGTTTCGCAAAGTTA 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69133794675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5