BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66280.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918548 jgi|Araly1|918548|Al_scaffold_0008_3299 1724 0.0
Ahg937978 jgi|Araly1|937978|scaffold_502169.1 966 0.0
Ahg496977 jgi|Araly1|496977|fgenesh2_kg.8__2793__AT5G66290.1 110 4e-23
> Ahg918548 jgi|Araly1|918548|Al_scaffold_0008_3299
Length=1101
Score = 1724 bits (933), Expect = 0.0
Identities = 1032/1081 (95%), Gaps = 2/1081 (0%)
Strand=Plus/Plus
Query 275 TCCAGATCTCTCAATGGCGATTCCGACATTGTGAAGCCGAGGAAGATTGCACTGGTCACC 334
||||||||||| || ||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 22 TCCAGATCTCTTAACGGCCATTCCGACATTCCGCAGCCGAGGAAGATTGCACTGGTCACC 81
Query 335 GGAATCACTGGCCAAGATGGATCTTACCTGACCGAGTTCCTGCTCGAGAAAGGCTACGAA 394
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 82 GGTATCACTGGCCAGGATGGATCTTACCTGACAGAGTTCCTGCTCGAGAAAGGCTACCAA 141
Query 395 GTTCACGGCCTCATCCGACGATCCTCCAATTTTAACACTCAGCGACTCAACCATATCTAC 454
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 142 GTTCACGGCCTCATCCGACGATCCTCCAATTTCAACACTCAGCGAATCAACCATATCTAC 201
Query 455 GTTGATCCCCACAACGTCAACAAAGCTCTCATGAAGCTCCACTACGGTGATCTCTCTGAT 514
|| ||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 202 GTCGATCCCCACAATGCCAACAAAGCTCTCATGAAGCTCCACTACGCTGATCTCTCTGAT 261
Query 515 GCCTCCTCCCTCCGCCGTTGGCTCGACGTCATCAAGCCTGACGAGGTCTACAACCTTGCT 574
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GCCTCCTCTCTCCGCCGTTGGCTCGACGTCATCAAGCCTGACGAGGTCTACAACCTTGCT 321
Query 575 GCTCAGTCCCACGTTGCCGTCTCCTTCGAGATCCCTGATTACACTGCTGACGTTGTCGCT 634
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 322 GCTCAGTCCCACGTCGCCGTCTCATTCGAGATCCCTGACTACACTGCTGACGTCGTCGCT 381
Query 635 ACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATCTCACAACATTGACAATGGCCGCGCC 694
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 382 ACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATCTCACAACATCGACAACGGCCGTGCC 441
Query 695 ATCAAGTACTACCAGGCTGGCTCTTCGGAGATGTTCGGGTCAACTCCTCCTCCGCAGTCA 754
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 442 ATCAAGTACTACCAGGCTGGCTCTTCCGAGATGTTCGGGTCAACTCCTCCTCCCCAGTCA 501
Query 755 GAGACCACGCCCTTCCATCCGAGATCTCCCTACGCTGCGTCCAAATGCGCTGCTCATTGG 814
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 502 GAGACCACGCCTTTTCATCCGAGATCTCCCTACGCTGCCTCCAAATGCGCTGCTCATTGG 561
Query 815 TACACAGTCAATTACCGAGAGGCCTACGGTCTGTACGCCTGCAACGGAATCCTCTTCAAC 874
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TACACTGTCAATTACCGAGAGGCCTACGGTCTGTACGCCTGCAACGGAATCCTCTTCAAC 621
Query 875 CACGAGTCACCTCGCAGAGGCGAGAACTTCGTGACTCGGAAAATCACTCGGGCCTTGGGA 934
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 622 CACGAGTCACCTCGCAGAGGCGAGAACTTCGTGACTAGGAAAATCACTCGGGCCTTGGGA 681
Query 935 AGGATCAAGGTCGGATTGCAGACCAAGCTCTTCCTGGGAAATATACAGGCTTCAAGAGAC 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AGGATCAAGGTCGGATTGCAGACCAAGCTCTTCCTGGGAAATATACAGGCTTCAAGAGAC 741
Query 995 TGGGGTTTCGCAGGAGACTACGTGGAAGCAATGTGGCTGATGCTGCAGCAGGAGAAACCA 1054
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TGGGGCTTCGCAGGAGACTACGTGGAAGCAATGTGGCTGATGCTGCAGCAGGAGAAACCA 801
Query 1055 GATGACTATGTGGTTGCAACTGAGGAATCACACACCGTCAAGGAGTTTCTGGACGTGTC- 1113
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 802 GATGACTACGTGGTTGCAACTGAAGAATCACACACCGTCGAGGAGTTTCTGGAGGTGTCC 861
Query 1114 TTTCGGGTACGTGGGGCTCAACTGGAAAGACCATGTCGAGATCGACAAAAGGTACTTCCG 1173
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 862 TTT-GGGTACGTCGGGCTCAACTGGAAAGACCATGTCGAGATCGACAAGAGGTACTTTCG 920
Query 1174 GCCCACGGAGGTCGACAATCTGAAAGGAGACGCAAGCAAGGCAAAGGAAATGTTGGGGTG 1233
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 921 GCCAACAGAGGTGGACAATCTGAAAGGAGACGCAAGCAAGGCAAAGGAGATGTTGGGGTG 980
Query 1234 GAAGCCAAAAGTAGGGTTCGAGAAGCTGGTGAAGATGATGGTGGACGAAGACCTTGAGCT 1293
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 981 GAAGCCGAAAGTAGGGTTCGAAAAGCTGGTGAAGATGATGGTGGACGAAGACCTTGAGCT 1040
Query 1294 GGCCAAGAGGGAGAAAGTGCTCGCCGACGCTGGTTACATGGACGCTCAGCAGCAACCTTG 1353
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1041 GGCCAAGAGGGAGAAAGTGCTCGCCGACGCTGGTTACATTGACGCTCAGCAGCAACCATG 1100
Query 1354 A 1354
|
Sbjct 1101 A 1101
> Ahg937978 jgi|Araly1|937978|scaffold_502169.1
Length=1172
Score = 966 bits (523), Expect = 0.0
Identities = 879/1053 (83%), Gaps = 16/1053 (2%)
Strand=Plus/Plus
Query 311 CCGAGGAAGATTGCACTGGTCACCGGAATCACTGGCCAAGATGGATCTTACCTGACCGAG 370
||||||||||| || ||| ||||||||||||| |||||||| ||||| || ||||| |||
Sbjct 109 CCGAGGAAGATAGCTCTGATCACCGGAATCACCGGCCAAGACGGATCGTATCTGACGGAG 168
Query 371 TTCCTGCTC-GAGAAAGGCTACGAAGTTCACGGCCTCATCCGACGATCCTCCAATTTTAA 429
|| || ||| || ||||||||||||||||| ||||| ||||| ||||| || ||||| ||
Sbjct 169 TTGCTTCTCGGA-AAAGGCTACGAAGTTCATGGCCTGATCCGTCGATCATCGAATTTCAA 227
Query 430 CACTCAGCGACTCAACCATATCTACGTTGATCCCCACAACGTCAACAAAGCTCTCATGAA 489
||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| |||||
Sbjct 228 CACTCAGCGACTCAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAA 287
Query 490 GCTCCACTACGGTGATCTCTCTGATGCCTCCTCCCTCCGCCGTTGGCTCGACGTCATCAA 549
||||||||||| |||||| | || || ||||| ||||| ||||||||||| || |||||
Sbjct 288 GCTCCACTACGCCGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGCTCGATGTGATCAA 347
Query 550 GCCTGACGAGGTCTACAACCTTGCTGCTCAGTCCCACGTTGCCGTCTCCTTCGAGATCCC 609
||||||||| ||||| ||||| || ||||| || ||||| || |||||||||||||||||
Sbjct 348 GCCTGACGAAGTCTATAACCTAGCCGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCC 407
Query 610 TGATTACACTGCTGACGTTGTCGCTACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATC 669
||||||||| || || || ||||| || || ||||| |||||||| || || ||||||||
Sbjct 408 TGATTACACAGCCGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATC 467
Query 670 TCACAACATTGACAATGGCCGCG-CCATCAAGTACTACCAGGCTGGCTCTTCGGAGATGT 728
||||| ||| |||| |||||| | ||||||| ||||| ||||| |||||||||||||
Sbjct 468 TCACACCATCGACAGTGGCCG-GTTTGTCAAGTATTACCAAGCTGGATCTTCGGAGATGT 526
Query 729 TCGGGTCAACTCCTCCTCCGCAGTCAGAGACCACGCCCTTCCATCCGAGATCTCCCTACG 788
| || |||||||||||||| || || ||||| ||||| || ||||| ||||| || ||||
Sbjct 527 TTGGATCAACTCCTCCTCCACAATCGGAGACGACGCCGTTTCATCCCAGATCGCCTTACG 586
Query 789 CTGCGTCCAAATGCGCTGCTCATTGGTACACAGTCAATTACCGAGAGGCCTACGGTCTGT 848
| || ||||||||||||||||||||||||||||| ||||||||||| || |||||||| |
Sbjct 587 CAGCTTCCAAATGCGCTGCTCATTGGTACACAGTGAATTACCGAGAAGCGTACGGTCTCT 646
Query 849 ACGCCTGCAACGGAATCCTCTTCAACCACGAGTCACCTCGCAGAGGCGAGAACTTCGTGA 908
||| || ||||||||| | ||||||||||||||||||||| | || ||||| |||||||
Sbjct 647 TCGCATGTAACGGAATCTTGTTCAACCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGA 706
Query 909 CTCGGAAAATCACTCGGGCCTTGGGAAGGATCAAGGTCGGATTGCAGACCAAGCTCTTCC 968
| |||| ||||| | || |||||| | |||||||| || |||||||| ||||||||||
Sbjct 707 CGAGGAAGATCACAAGAGCATTGGGACGTATCAAGGTTGGTTTGCAGACGAAGCTCTTCC 766
Query 969 T-GGGAAATATACAGGCTTCAAGAGACTGGGG-TTTCGCAGGAGACTACGTGGAAGCAAT 1026
| ||||| | | || || |||||||| ||||| ||| ||||||||||| |||||||||||
Sbjct 767 TTGGGAATT-TGCAAGCGTCAAGAGATTGGGGATTT-GCAGGAGACTATGTGGAAGCAAT 824
Query 1027 GTGGCTGATGCTGCAGCAGGAGAAACCAGATGACTATGTGGTTGCAACTGAGGAATCACA 1086
|||| ||||| ||||||| ||||| |||||||| || || |||||||| |||||| ||||
Sbjct 825 GTGGTTGATGTTGCAGCAAGAGAAGCCAGATGATTACGTTGTTGCAACAGAGGAAGCACA 884
Query 1087 CACCGTC-AAGGAGTTTCTGGACGTGTC-TTTCGGGTACGTGGGGCTCAACTGGAAAGAC 1144
|| || ||| ||||||| || ||||| ||| ||||| |||| ||| | ||||| ||
Sbjct 885 TACAGTGGAAG-AGTTTCTTGATGTGTCATTT-GGGTATTTGGGACTCGATTGGAA-GAA 941
Query 1145 -CATGTCGAGATCGACAAAAGGTACTTCCGGCCCA-CGGAGGTCGACAATCTGAAAGGAG 1202
||||| ||||| ||| |||||||| |||| | | || || || || || ||||||
Sbjct 942 TCATGTTGAGATTGACCCGAGGTACTTTAGGCC-ATCTGAAGTAGATAACCTTCAAGGAG 1000
Query 1203 ACGCAAGCAAGGCAAAGGAAATGTTGGGGTGGAAGCCAAAAGTAGGGTTCGAGAAGCTGG 1262
| |||||||||||||||||| ||||||| ||||| |||||||||||||| |||| |||||
Sbjct 1001 ATGCAAGCAAGGCAAAGGAAGTGTTGGGATGGAAACCAAAAGTAGGGTTTGAGACGCTGG 1060
Query 1263 TGAAGATGATGGTGGACGAAGACCTTGAGCTGGCCAAGAGGGAGAAAGTGCTCGCCGACG 1322
||||||||||||| || ||||| |||| || || || ||||||||| |||| | || |
Sbjct 1061 TGAAGATGATGGTTGATGAAGATCTTGCCCTTGCTAATAGGGAGAAACTGCTTGTTGATG 1120
Query 1323 CTGGTTACATGGACGCTCAGCAGCAACCTTGAT 1355
||||||||||||| ||| |||||||||||||||
Sbjct 1121 CTGGTTACATGGATGCTAAGCAGCAACCTTGAT 1153
> Ahg496977 jgi|Araly1|496977|fgenesh2_kg.8__2793__AT5G66290.1
Length=865
Score = 110 bits (59), Expect = 4e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 1496 CAAAAGGCAAACAAAGCATATTTATTACATATGAATTTTCCCCTTATCAGAACAATGGTT 1555
|||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 865 CAAAAGGCAAGCAAAGCATATTTATTACATATGAATTTTCTC-TTATCACAACAATGGTT 807
Query 1556 TCTTACTGGTCACAA 1570
|||||||| ||||||
Sbjct 806 TCTTACTGCTCACAA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5