BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66290.1
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496977 jgi|Araly1|496977|fgenesh2_kg.8__2793__AT5G66290.1 1338 0.0
> Ahg496977 jgi|Araly1|496977|fgenesh2_kg.8__2793__AT5G66290.1
Length=865
Score = 1338 bits (724), Expect = 0.0
Identities = 824/871 (95%), Gaps = 12/871 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCATCAGATTCAACTCTGCTAGGCTCTCAGGAAAATCGA---GGTGATGTGATT 57
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGAGCATCAGATTCAACTCTGCTAGGCTCTCAGGAAAATCGAGGTGGTGATGTGATT 60
Query 58 ACGACTATATCTCATCGATCAGAAATAGTCGATCCCATTCTCGAGAATCTTAAAGCTCTC 117
||||| || ||||||||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 61 ACGACCATCTCTCATCGATCCGAGATAGTCGATCCCATTCTCGAGAATCTCAAAGCCCTC 120
Query 118 ACAGTAAGTAGGCCAATATTGAAGTCTCCTCCCACGGAAAGTAGCTTAACAGATATCTTA 177
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGTTAGTAGGCCAATATTGAAGTCTCCTCCCACGGAAAGTAGCTTAACAGATATCTTA 180
Query 178 GTGAGAAAAGCTCTATCCAGTTCCTCTTCCAATACGGTTGATCCTCAAATACTTGTAGAG 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 GTGAGAAAAGCTCTATCCAGTTCCTCTTCCAATACGGTTGATCCTCAAATACTTCTAGAG 240
Query 238 CTCTTCTCCATTTACCGAGAATGGCAAGAGAACAAAGCTCAAGAAATTACCAAGAGACAG 297
|||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 241 CTCTTCTCCATTTACCGACAATGGCAAGAGAGCAAAGCTCAAGATATTACCAAGAGACAG 300
Query 298 GAAGATATAGAAAACAAGATAGAAGTCGCAGATGCTTTGGCGACTAAACTTTTACAGAGG 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GAAGATATAGAAAACAAGATAGAAGTGGCAGATGCTTTGGCGACTAAACTTTTACAGAGG 360
Query 358 TTTAACCACTCTGTTTCTGCAATGAGGACAACTGCCCAGCATTTATCTCAAGTTCATGGT 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 TTTAACCACTCTGTTTCTGCAATGAGGACAACTTCCCAGCATTTATCTCAAGTTCATGGT 420
Query 418 TTGCAGGTGGAGCTCGGGGAGCTTAAAGGAAGATTGACAGAGGTGATCAGCAACTGCGAT 477
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 421 TTGCAGGTGGAGCTCGGGGAGCTTAAAGGAAGGTTAACTGAGGTGATCAGCAACTGCGAT 480
Query 478 ACATTATGTAAGAGAATTAATTCTGAGGGACCTGAATCTCTGAGGTCCACAGTGGCGCCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 ACATTATGTAAGAGAATTAATTCTGAGGGACCTGAATCTCTGAGGTCCACAGTTACGCCT 540
Query 538 TTTTCTCTTGCATCTCCCGATTCGGTCAGTATAAATACTACTACAACTCTGTCTTCTAAA 597
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 541 TTTTCTCTTGCATCTCCCGATTCGGTCAGTACAAATACTACTAC---TCTGTCTTCTAAA 597
Query 598 CCCGAGGCATAAGAGTAAATACTCTTAATGGTAGTTAGATTGGTGAATCGAATACGTGTA 657
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 598 CCAGAGGCATAAGAGTAAATACTCTTAATGATAGTTAGATTGGTGAATCGAATACGTCTA 657
Query 658 GTTCTACAGCATACTTTCTGATCTCCTCTGATTTTGCATAGATGCATGATGATGCTATTG 717
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 GTTCTACAGTATACTTTCTGATCTCCTCTGATTTTGCATAGATTCATGATGATGCTATTG 717
Query 718 ATTGATCT-TTTTGTTACAAATCATTGTTTTCTTTTGTCATTTCATCTTTAGGCTTTTCG 776
|||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 718 ATTGATCTCTTTTATTACAAATCATTATTTTCTTTTGTCATTTCATCTTTAGGCTTT-CA 776
Query 777 -A-TTTGTACAATCGCTTGTGACCAGTAAGAAACCATTGTTCTGATAAGGGGAAAATTCA 834
| ||| || | | | |||||| |||||||||||||||||| ||||||| | ||||||||
Sbjct 777 TAATTTTTA-AGTTGATTGTGAGCAGTAAGAAACCATTGTTGTGATAAGAG-AAAATTCA 834
Query 835 TATGTAATAAATATGCTTTGTTTGCCTTTTG 865
|||||||||||||||||||| ||||||||||
Sbjct 835 TATGTAATAAATATGCTTTGCTTGCCTTTTG 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32023250280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5