BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66300.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496976 jgi|Araly1|496976|fgenesh2_kg.8__2792__AT5G66300.1 1441 0.0
> Ahg496976 jgi|Araly1|496976|fgenesh2_kg.8__2792__AT5G66300.1
Length=1019
Score = 1441 bits (780), Expect = 0.0
Identities = 954/1035 (92%), Gaps = 24/1035 (2%)
Strand=Plus/Plus
Query 12 GGTTTCTTCTATGATCGATCTTTCTAAGATCAAGAAGAAACCGCAGCGAAATAAATCCTA 71
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1 GGTTTCTTCTATGATCGATCTTTCTAAGATCAAGAAGAAACCGCAGCCAAATAAACCCTA 60
Query 72 GAAAATAACTATCAATATGATGAAGGTTGATCAAGATTATTCGTGTAGTATACCGCCTGG 131
||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 61 GAAGATAACTATCAATATGATGAAGGTGGATCAAG---AGTCGTGTAGTATACCGCCTGG 117
Query 132 ATTTAGGTTTCATCCGACAGATGAAGAACTTGTCGGATATTATCTCAAGAAGAAAATCGC 191
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 118 ATTTAGGTTTCATCCGACAGACGAAGAACTTGTCGGATATTATCTCAAGAAGAAAGTCGC 177
Query 192 CTCCCAGAGGATTGATCTCGACGTTATCAGAGAAATTGATCTTTACAAGATCGAACCATG 251
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCCCAGCGGATTGATCTCGACGTTATCAGAGAAATTGATCTTTACAAGATCGAACCATG 237
Query 252 GGATCTACAAGAGAGATGTAGGATAGGGTACGAGGAGCAAACGGAGTGGTATTTCTTCAG 311
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GGATCTACAAGAGAGATGTAGGATAGGGTACGAGGAGCAAAAGGAGTGGTATTTCTTCAG 297
Query 312 CCATAGAGACAAGAAGTATCCGACTGGGACTAGGACAAACCGAGCCACCGTGGCCGGTTT 371
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 CCATAAAGACAAGAAGTATCCGACTGGAACTAGGACAAACCGAGCCACCGTGGCCGGTTT 357
Query 372 CTGGAAAGCAACGGGCCGGGACAAGGCGGTTTACCTCAACTCCAAACTTATCGGTATGAG 431
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTGGAAAGCAACGGGCAGGGACAAGGCGGTTTACCTCAACTCCAAACTTATCGGTATGAG 417
Query 432 AAAAACGCTTGTCTTTTACCGAGGTCGAGCGCCTAATGGCCAAAAGTCCGATTGGATCAT 491
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 418 AAAAACACTTGTCTTTTACCGAGGTCGAGCTCCTAATGGCCAAAAGTCTGATTGGATCAT 477
Query 492 TCACGAATACTACAGCCTCGAGTCACACCAGAACTCTCCTCCACAGGAAGAAGGATGGGT 551
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct 478 TCACGAATACTACAGCCTCGAGTCACACCAGAACTCTCCTCCGCTGGAGGAAGGTTGGGT 537
Query 552 AGTGTGTAGAGCATTTAAGAAACGAACGACCATCCCAACAAAAAGGAGGCAACTTTGGGA 611
||||||||||||||| ||||||||||||| | ||||||| ||||| ||||||||||||||
Sbjct 538 AGTGTGTAGAGCATTCAAGAAACGAACGAACGTCCCAACCAAAAGAAGGCAACTTTGGGA 597
Query 612 TCCGAACTGCTTATTCTACGACGAC-GCCACTCTCTTGGAACCTCTCGACAAGCGAGCCA 670
| |||||||||| |||||||||| | | ||||||||||||||||| || ||||||||||
Sbjct 598 TTCGAACTGCTTCTTCTACGACGCCAGT-ACTCTCTTGGAACCTCTGGAGAAGCGAGCCA 656
Query 671 GACATAATCCTGATTTTACCGCCACACCGTTCAAGCAAGAACTACTCTCCGAGGCCAGTC 730
||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||| ||
Sbjct 657 GACATAATCCTGACTTTGTCGGCACACCGTTTAAGCAAGAACTACTCTCCGAGGCCAATC 716
Query 731 ACGTCCAGGATGGAGATTTCGGATCTATGTACCTTCAATGCATCGATGATGATCAATTCT 790
||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 717 ACGTCGAAGATGGAGATTTCGGATCTATGTACCTTCAATCCATGGATGATGATCAATTAT 776
Query 791 CCCAGCTTCCTCAGCTCGAGAGCCCCTCTCTTCCGTCGGAAATAACTCCCCATAGTACTA 850
||||||||||||||| |||||||||||||||||||||||||||||||| || | | |
Sbjct 777 ACCAGCTTCCTCAGCTGGAGAGCCCCTCTCTTCCGTCGGAAATAACTCCGCA--G-A-T- 831
Query 851 CTTTTTCTGAGAACAGTAGCCGGAAAGATGACATGAGCTCCGAGAAGAGGATCACTGACT 910
|| | ||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 832 -TT---CGGAGAACAGTAGCCGGAAAGATAACGTGAGCGCCGAGAAGAGGATCACTGACT 887
Query 911 GGAGATATCTAGATAAGTTCGTGGCGTCTCAATTTTTGATGAGT-G-GA-GAAGACTAAA 967
|||||| ||||||||| ||||||||||| || || ||||||||| | | ||||||||||
Sbjct 888 GGAGATCTCTAGATAAATTCGTGGCGTCGCAGTTGTTGATGAGTAGTGGCGAAGACTAAA 947
Query 968 AAAGGCTT-TC--CTATGCATGCATGCAC-TAGAAACGTCGTCGCATTTTGGATTTACAT 1023
| ||||| | |||||||||||||||| | |||| ||||||| |||||||||||||||
Sbjct 948 A--GGCTTCTTTTCTATGCATGCATGCACAT-GAAAAGTCGTCGTATTTTGGATTTACAT 1004
Query 1024 ATATGGTCGTAATAA 1038
|||||||||||||||
Sbjct 1005 ATATGGTCGTAATAA 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5