BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66310.1
Length=3740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496975 jgi|Araly1|496975|fgenesh2_kg.8__2791__AT5G66310.1 2939 0.0
Ahg485469 jgi|Araly1|485469|fgenesh2_kg.5__1461__AT3G51150.1 1419 0.0
Ahg929419 jgi|Araly1|929419|scaffold_301876.1 52.8 2e-05
> Ahg496975 jgi|Araly1|496975|fgenesh2_kg.8__2791__AT5G66310.1
Length=3362
Score = 2939 bits (1591), Expect = 0.0
Identities = 1826/1937 (94%), Gaps = 26/1937 (1%)
Strand=Plus/Plus
Query 360 AGATCGAACTTTCTACAGAAGAGGCTGTGATATATCATCTTCTTAAGTCCTCC-CCtc-t 417
||||||||| ||||||||||| |||||||||| || |||||||||| |||||| || | |
Sbjct 116 AGATCGAACATTCTACAGAAGCGGCTGTGATA-ATAATCTTCTTAACTCCTCCTCC-CAT 173
Query 418 tcttcttct-tcttctAAGGTAGGGTAGAAGATGACTACAGAAGATGATGATCAGATGCT 476
||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct 174 TCTTCTTCTCTGTTCTTAGGTGGGGTAGAAGATGACTACAGAAGATGATGATCAGATGTT 233
Query 477 AGGACCAAGCGGCACCCAGGAAAAGATCTATGTTTCTGTTCGTATGCGACCTTTAAACGA 536
||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 234 AGGACCAAGCGGCACTGAGGAAAAGATTTATGTTTCTGTTCGTATGCGCCCTTTAAACGA 293
Query 537 CAAGGAAAAGTTTAGGAATGATGTCCCTGACTGGGAGTGCATCAACAATACTACCATCAT 596
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 294 CAAGGAAAAGTTTAGGAATGATGTCCCGGACTGGGAGTGCATCAACAATACTACCATCAT 353
Query 597 TTACAGGAGTCATCTTTCTATCTCCGAGCGTTCCATGTATCCTTCTGCTTACACATTTGA 656
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 TTACAGGAGCCATCTTTCTATCTCTGAGCGTTCCATGTATCCTTCTGCTTACACATTTGA 413
Query 657 CAGAGTGTTTAGCCCTGAGTGTTGTACAAGGCAGGTGTATGAACAAGGGGCAAAGGAAGT 716
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 414 CAGAGTGTTTAGCCCTGATTGTTGTACGAGGCAGGTCTATGAACAAGGGGCAAAGGAAGT 473
Query 717 CGCTTTCTCTGTTGTCAGTGGCGTTAATGCTAGTGTATTCGCATATGGGCAAACAAGCAG 776
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 474 CGCTTTCTCCGTTGTCAGTGGCGTTAATGCTAGTGTATTTGCATATGGGCAAACAAGCAG 533
Query 777 TGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTA 836
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGGAAAGACTTATACAATGAGCGGAATTACTGACTGCGCCTTGGTTGATATATATGGCTA 593
Query 837 CATTGACAAGCACAAGGAAAGAGAATTCATTCTTAAGTTCTCTGCTATGGAGATCTACAA 896
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 594 CATTGACAAGCACAAGGAAAGAGAATTCATTCTTAAGTTCTCTGCCATGGAGATCTACAA 653
Query 897 TGAGTCTGTAAGAGATCTCTTAAGTACAGATACTAGTCCACTCAGACTTTTAGATGACCC 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 654 TGAGTCTGTAAGAGATCTCTTAAGTACAGATACTAGTCCACTCAAACTTTTAGATGACCC 713
Query 957 TGAGAAAGGGACAGTTGTTGAGAAACTCACAGAGGAAACTCTGCGAGACTGGAATCATTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGAGAAAGGGACAGTTGTTGAGAAACTCACAGAGGAAACTCTGCGAGACTGGAATCATTT 773
Query 1017 CAAGGAGCTCCTATCTGTCTGCAAAGCACAAAGGCAAATTGGTGAGACAGCTCTAAATGA 1076
||||||||| |||||||||||| |||| ||| |||| ||||| |||||||||||||||||
Sbjct 774 CAAGGAGCTTCTATCTGTCTGCGAAGCTCAACGGCAGATTGGAGAGACAGCTCTAAATGA 833
Query 1077 AGTTAGCTCCCGGTCTCATCAGATTTTGAGATTGACAGTAGAAAGCATAGCTCGTGAATT 1136
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 834 AGTTAGCTCCCGGTCTCATCAGATTTTGAGATTGACAGTTGAAAGCACAGCTCGTGAATT 893
Query 1137 TTCTACCAATGATAAGTTTAGTACTCTAACAGCGACAGTGAACTTCATTGATCTTGCTGG 1196
||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 894 TTCCACCAATGATAAGTTTAGTACACTAACAGCAACAGTGAACTTTATTGATCTTGCTGG 953
Query 1197 AAGTGAACGTGCGTCTCAATCATTATCAGCCGGCACAAGGTTAAAAGAAGGTTGTCATAT 1256
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 954 AAGTGAACGTGCATCTCAATCATTATCAGCCGGTACAAGGTTGAAAGAAGGTTGTCATAT 1013
Query 1257 AAACCGAAGTTTGTTAACACTGGGAACTGTGATCCGTAAGCTAAGTAAAGAAAAAACTGG 1316
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 1014 AAACCGAAGTTTGTTAACGCTGGGAACTGTGATACGTAAGCTAAGTAAAGGAAAAACTGG 1073
Query 1317 GCACATTCCATTCAGAGATTCAAAACTGACACGCATACTTCAGTCTTCTTTGGGAGGAAA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GCACATTCCATTCAGAGATTCAAAACTGACACGCATACTTCAGTCTTCTTTGGGAGGAAA 1133
Query 1377 TGCAAGAACTGCCATAATTTGCACTATGAGTCCTGCGAGAATCCATGTTGAACAATCAAG 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1134 TGCAAGAACTGCCATAATTTGCACTATGAGTCCTGCGAGAATCCATGTTGAGCAGTCAAG 1193
Query 1437 AAACACACTGTTATTTGCAAGCTGCGCAAAGGAGGTGACAACAAATGCACAAGTCAATGT 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1194 AAACACACTGTTATTTGCAAGCTGCGCAAAGGAGGTGACAACAAATGCACAAGTCAATCT 1253
Query 1497 TGTCATGTCTGATAAAGCTTTAGTAAAGCACTTGCAGAGGGAGTTGGCTAAACTGGAAAG 1556
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1254 TGTCATGTCTGATAAAGCTTTAGTAAAACACTTGCAGAGGGAGTTGGCTAAACTGGAAAG 1313
Query 1557 TGAGTTGAGAAGCCCTAGTCAGGCTTCAATTGTTTCTGACACAACTGCATTACTGACGGA 1616
||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||
Sbjct 1314 GGAGTTGAGAAGCCCTGGTCAGCCTTCGGTTGCTTCTGACACAACTGCATTACTGACGGA 1373
Query 1617 GAAAGACCTTGAGGTTGAAAAGCTTAAGAAAGAGGTATTCCAACTAGCACAACAACTAGA 1676
||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct 1374 GAAAGACCTCGAGGTTGAAAAGCTAAAGAAAGAGGTACTCCAACTAGCACAACAGCTAGA 1433
Query 1677 GCAAGCTCGTTCCGAGATTAAGGATCTTCGACGAATGGTTGAAGAAGa-aaaaaaCCAAG 1735
|||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||
Sbjct 1434 GCAAGCTCGTTCCGAGATTATGGATCTTCGAAGAATGGTTGAAGAAGAGAAAAAACC-AG 1492
Query 1736 AAAAAGAGACGCTATCAACAGAAACAGAAGGGTTAAATGTTCTGATGGAACATCAATACC 1795
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1493 AAAAAGAAACGCTATCAACAGAAACAGAAGGGTTAAATGTTCTGTTGGAACATCAATACC 1552
Query 1796 CCAAGCTGCGGGTGCGCAGGACATGGGACTCTGAGAATACAACACCACTGAGCCCTATAT 1855
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 CCAAGCTGCGAGTGCGCAGTACATGGGACTCTGAGAATACAACACCACTGAGCCCTATAT 1612
Query 1856 CAGCTCACCGTTCCAGTATATCTCCACGATCAACTGAATATAGTTATGAAGAGAATGTCT 1915
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CAGCTCACCGCTCCAGTATATCTCCACGATCAACTGAATATAGTTATGAAGAGAATGTCT 1672
Query 1916 TTCAGCTATCAGATTTCAGGATAGATTCTGCATCAAGTAGTCCGCAACAGCTTGCGTTTG 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TTCAGCTATCAGATTTCAGGATAGATTCTGCATCAAGTAGTCCGCAACAGCTTGCGTTTG 1732
Query 1976 TAACTCCTTTCCTTAAGGTTCCACTTGATGATATTCACGTGACAGATACTGTAGACCAAT 2035
|||||||||||||| | | | || | |||| |||||| |||||||||||||
Sbjct 1733 TAACTCCTTTCCTT--G-----A-T--AT--T---CACGGGACAGAAACTGTAGACCAAT 1777
Query 2036 CTCATGTTCACAAAGAGGAAGCTATAGAAGAACCTCATGTTCAGGAGGAACGGTTTTATG 2095
|||||||||||| ||||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 1778 CTCATGTTCACATAGAGGAAATTACAGATCAACCTCATGTTCAGGAGGAGCGGTTTTATG 1837
Query 2096 AAATGGCTGAACACACTGACGGAAATTCTGAGGATAACTGCAGGGAAGTTCGGTGCATAG 2155
||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1838 AAATGGCTGAACAGACTGACGAAAATTCTGAGGATAACTGCAGGGAAGTTCGCTGCATAG 1897
Query 2156 AAACAGAGAAGTCAGATATTAGTATAGGTCCAGTGGAAAATATGCCGGAGAGCAGTCCAG 2215
|||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1898 AAACGGAGAAGTCAGATATTGGTATAGGTCCAGAGGAAAATATGCCGGAGAGCAGTCCAG 1957
Query 2216 ACAAATACGAGGCTGT-AACTGCAGAAGAACCAGTATCTGTGACAGAGCCAAAGAACTTA 2274
|||||||||| ||||| || || |||||||||||||| |||||||||| |||||||||||
Sbjct 1958 ACAAATACGAAGCTGTGAA-TGAAGAAGAACCAGTATGTGTGACAGAGTCAAAGAACTTA 2016
Query 2275 CAAC-ATCCGACAGAAG 2290
| || | || |||||||
Sbjct 2017 CGACCACCC-ACAGAAG 2032
Score = 2091 bits (1132), Expect = 0.0
Identities = 1289/1363 (95%), Gaps = 17/1363 (1%)
Strand=Plus/Plus
Query 2286 AGAAGAAGCAGTATGTGTGACAGAGACAAAGAACTTAC-AACATCCCACAGAAGCTGAAA 2344
||||||| ||||||||||||||||| |||||||||||| | || ||||||||||||||||
Sbjct 1980 AGAAGAACCAGTATGTGTGACAGAGTCAAAGAACTTACGACCA-CCCACAGAAGCTGAAA 2038
Query 2345 ACgaagaagaagaagaagaagaaagaGTAAAGGAAGTCAGTGGTGCTTCTCCTGAACCAA 2404
|| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2039 AC--------A-AAGAAGAAGAAAGAGTAAAGGAAGTCAGTGGTGCTTCTCCTCAACCAA 2089
Query 2405 AACAAGAAAGCAACCTCACAAAAAATCCTGCATTGTGTGATTTGGAATGTTCACCTGAT- 2463
||||||||| ||||||| |||||| |||| |||| |||||||| ||||||||||||| |
Sbjct 2090 AACAAGAAACCAACCTCGCAAAAACTCCTCCATTCTGTGATTTCGAATGTTCACCTG-TG 2148
Query 2464 GAGTTTGATACAA-GCATGTCTAACCTGAGTAGAATCTCAACACCTCCAGCCCTTATCAC 2522
|||||||||| || |||||||||||||||| |||||| |||| |||||| | ||||||||
Sbjct 2149 GAGTTTGATA-AAGGCATGTCTAACCTGAGAAGAATCCCAACGCCTCCAACACTTATCAC 2207
Query 2523 TCCCTCTCCTGAAAAGCCTTTCTCTTGGATTATGGAGAGAGATTCACAACTT-TTCAGAG 2581
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 2208 TCCCTCTCCTGAAAAGCCTTTCTCTTGGCTTATGGAGAGAGATTCACAA-TTGTTCAGAG 2266
Query 2582 GAATGAAGCTGACTAGAAGTCGAAGCTGCCGACCAAGCTTATTATCGAGCCCTTCCTCCT 2641
| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2267 GCATGAAGCTGACTAGAAGTCGAAGCTGCCGGCCAAGCTTATTATCGAGCTCTTCCTCCT 2326
Query 2642 CTTGGTTAGAGAAAGATGCTGATACACCGCCAAGCTGGTACGACAAAGAATTTATCAAAA 2701
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2327 CTTGGTTAGAGAAAGATGCTGATACACCGCCAAGCTGGTACGACAAAGAATTTGTCAAAT 2386
Query 2702 CAGCTGAGAGAAACTTGACAATGTGCGACATCAAGAACCAGAGATTGTTGCAGGATGAGT 2761
||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2387 CAGCTGAGACAAACCTGACAATGTGCGACATCAAGAACCAGAGGTTGTTGCAGGATGAGT 2446
Query 2762 TTAGTGGGAGGAGCATGCCAACAACTTGGTTCGAGAGAAGCTTGAGTGACACTCAAACGG 2821
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2447 TTAGCGGGAGGAGCATGCCAACAACTTGGTTCGAGAGAAACTTGAGTGACACTCAAACGG 2506
Query 2822 TGGATGCTGCTTCACATGGTGTCAGCAACGAAATGTCGCCAAATGAATCACCATTTCGGC 2881
|||||||||||||||||||||||| || ||||||||||||||||| ||||| | |||||
Sbjct 2507 CGGATGCTGCTTCACATGGTGTCAGTAATGAAATGTCGCCAAATGAGTCACCGTCTCGGC 2566
Query 2882 CATCTGATGCTTCTGTGTTTGAGCTCCAGACAAGTGGTAGAGCTTCAATAAGCCAGGACA 2941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2567 CATCTGATGCTTCTGTGTTTGAGCTCCAGACAAGTGGTAGAGCTTCAATAAGCCAGGACA 2626
Query 2942 GAACAGAGGAGACTGCTGCTCAAAAAGACAAGCAAATCATTCATCGATCGATGGAGGAAA 3001
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2627 GAACAGAGGAGACTGGTGCTCAAAAAGACAAGCAAATCATTCATCGCTCGATGGAGGAAA 2686
Query 3002 GGGAACAGAAGTTCTTGGCCTCGAATTCAACGAAGAGTTTCAAGGACGCAGCAATGGACC 3061
|||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 2687 TGGAACAGAAGTTCTTGTCCTTGAGTTCAACGAAGAGTTTCAAGGACGCAGCAATGGACC 2746
Query 3062 CAATACAAGACTACTTAGACACGGCCTTGAATTGGCCAGTGGAGTTCAAGAGGCTACAGA 3121
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2747 CAATACAAGACTACTTAGACACGCCCTTGAATTGGCCGGTGGAGTTCAAGAGGCTACAGA 2806
Query 3122 GGGAGATAATAGAGCTATGGCACGTGTGTAAAGTCTCAATGGCACACAGAAGCTACTTCT 3181
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2807 GGGAGATAATAGAGCTGTGGCACGTGTGTAAAGTCTCTATGGCACACAGAAGCTACTTCT 2866
Query 3182 TCCTTCTGTTCAGAGGAGATCAGAAAGATTGCTTGTACTTGGAGGTAGAGCTCCGTAGAC 3241
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2867 TCCTTCTGTTTAGTGGAGATCAGAAAGATTGCCTGTACTTGGAGGTAGAGCTCCGTAGAC 2926
Query 3242 TTAAGTACATCAGAGAATCTTTCGCCCAAAATAGCAACGATGGCAACAATATGACCCTAA 3301
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 2927 TTAAGTACATCAGAGAATCTTTTGCCGAAAATAGCAACGATGGCCACAATATGACCCTAA 2986
Query 3302 TCTCCTGCACGAGGGCATTGACGAGGGAGAGGTATAAGCTGAGCAAGCTGATGCAGAGGA 3361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2987 TCTCCTGCACGAGGGCGTTGACGAGGGAGAGGTATAAGCTGAGCAAGCTGATGCAGAGGA 3046
Query 3362 AACTGTCGAAAGAAGAGAGAGAGAACTTGTTCTTGAGATGGGGCATTGGGCTCAACACGA 3421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3047 AACTGTCGAAAGAAGAGAGAGAGAACTTGTTCTTGAGATGGGGCATTGGGCTCAACACGA 3106
Query 3422 ATCACAGACGGGTCCAGCTGGCGCGTCGTCTCTGGTCGGATTACAAAGACATGGGTCATG 3481
||||||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 3107 GTCACAGACGGGTCCAGCTGGCACACCGGCTCTGGTCGGATTACAAAGACATGGGTCATG 3166
Query 3482 TCCGAGAGAGCGCCTCCCTCGTTGGTAAGCTCAATGGGTTCGTGGACATGAAGTTGACTT 3541
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3167 TCCGAGAGAGCGCTTCCCTCGTTGGTAAGCTCAATGGGTTTGTGGACATGAAGTTGACTT 3226
Query 3542 CCACAGAGATGTTTGGCGTCAACTATGCTTTCAGACCACCACGTCCCAAGAAATCTAGTC 3601
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3227 CCACAGAGATGTTTGGCGTCAACTATGCTTTCAGACCACCTCGTCCCAAGAAATCTAGTC 3286
Query 3602 TTTGGAAACGCAGCGTTTTGTCCCTCTCCTTTTTGTAACTACT 3644
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 3287 TTTGGAAACGCAGCGTTTTGTCCCTCTCCTTTTTGTAACTACT 3329
> Ahg485469 jgi|Araly1|485469|fgenesh2_kg.5__1461__AT3G51150.1
Length=3470
Score = 1419 bits (768), Expect = 0.0
Identities = 1296/1547 (84%), Gaps = 52/1547 (3%)
Strand=Plus/Plus
Query 466 GATCAGATGCTAGGACCAAGCGGCACCCAGGAAAAGATCTATGTTTCTGTTCGTATGCGA 525
|||||||||| ||| || || || | | || ||||| | ||||||||||||| || |
Sbjct 355 GATCAGATGCAAGGGCCGAGTGGTAGGGAAGAGAAGATTTTTGTTTCTGTTCGTCTGAGG 414
Query 526 CCTTTAAACGACAAGGAAAAGTTTAGGAATGATGTCCCTGACTGGGAGTGCATCAACAAT 585
|| ||||| | || |||| | ||||||||||| | || |||||||| ||||| ||
Sbjct 415 CCATTAAATGTGAAAGAAAGGGCAAGGAATGATGTGGCAGATTGGGAGTGTATCAATGAT 474
Query 586 -ACTACCATCATTTACAGGAGTCATCTTTCTATCTCCGAGCGTTCCATGTATCCTTCTGC 644
| || |||| |||||||| ||||| ||||| || |||||||||||||| || ||||
Sbjct 475 GA-AACGGTCATATACAGGAGCCATCTCTCTATATCAGAGCGTTCCATGTACCCCACTGC 533
Query 645 TTACACATTTGACAGAGTGTTTAGCCCTGAGTGTTGTACAAGGCAGGTGTATGAACAAGG 704
||||||||||||||||||||| |||||||||||| ||| ||| |||||||||| |||||
Sbjct 534 GTACACATTTGACAGAGTGTTTGGCCCTGAGTGTTCTACCAGGGAGGTGTATGATCAAGG 593
Query 705 GGCAAAGGAAGTCGCTTTCTCTGTTGTCAGTGGCGTTAATGCTAGTGTATTCGCATATGG 764
||| |||||||| ||| |||||||||||||||| ||| |||||||||| || ||||||||
Sbjct 594 GGCTAAGGAAGTGGCTCTCTCTGTTGTCAGTGGGGTTCATGCTAGTGTCTTTGCATATGG 653
Query 765 GCAAACAAGCAGTGGAAAGACGTACACTATGAGCGGAATTACTGACTGCGCCTTGGTTGA 824
||||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| ||
Sbjct 654 GCAAACAAGCAGTGGAAAGACATACACTATGAGTGGAATTACTGATTACGCCTTGGCCGA 713
Query 825 TATATATGGCTACATTGACAAGCACAAGGAAAGAGAATTCATTCTT-AAGTTCTCTGCTA 883
|||||||| |||||||| |||||||| ||||||||||||||| || |||||||| || |
Sbjct 714 TATATATGATTACATTGAGAAGCACAATGAAAGAGAATTCATT-TTGAAGTTCTCAGCCA 772
Query 884 TGGAGATCTACAATGAGTCTGTAAGAGATCTCTTAAGTACAGATACTAGTCCACTCAGAC 943
|||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||||||||
Sbjct 773 TGGAGATCTATAATGAGTCTGTAAGAGACCTCTTGAGTACAGACATTAGTCCACTCAGAC 832
Query 944 TTTTAGATGACCCTGAGAAAGGGACAGTTGTTGAGAAACTCACAGAGGAAACTCTGCGAG 1003
|| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 833 TTCTAGATGATCCTGAGAAAGGAACAGTTGTTGAGAAACTCACGGAGGAAACTCTGCGGG 892
Query 1004 ACTGGAATCATTTCAAGGAGCTCCTATCTGTCTGCAAAGCACAAAGGCAAATTGGTGAGA 1063
||||||||||||| |||||||| |||| |||| | ||| ||| | || ||||| ||||
Sbjct 893 ACTGGAATCATTTTAAGGAGCTTTTATCAATCTGTATAGCTCAACGACATATTGGAGAGA 952
Query 1064 CAGCTCTAAATGAAGTTAGCTCCCGGTCTCATCAGATTTTGAGATTGACAGTAGAAAGCA 1123
||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct 953 CAGCTTTAAATGAAGTTAGCTCCCGCTCTCATCAGATTCTGAGATTGACAGTTGAAAGCA 1012
Query 1124 TAGCTCGTGAAT-TTTCTACCAATGATAAGTTTAGTACTCTAACAGCGACAGTGAACTTC 1182
||| ||||||| ||| | || ||||| ||||||||||| |||||||||||||| |||
Sbjct 1013 CAGCACGTGAATATTT-GGCGAAGGATAAATTTAGTACTCTCACAGCGACAGTGAATTTC 1071
Query 1183 ATTGATCTTGCTGGAAGTGAACGTGCGTCTCAATCATTATCAGCCGGCACAAGGTTAAAA 1242
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 1072 ATTGATCTTGCTGGAAGTGAACGTGCATCTCAATCATTATCAGCCAGCACAAGGTTGAAA 1131
Query 1243 GAAGGTTGTCATATAAACCGAAGTTTGTTAACACTGGGAACTGTGATCCGTAAGCTAAGT 1302
|||||||||||||||||||||||||| ||||||| |||||||| || || |||||||||
Sbjct 1132 GAAGGTTGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGT 1191
Query 1303 AAA-GAAAAAACTGGGCACATTCCATTCAGAGATTCAAAACTGACACGCATACTTCAGTC 1361
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 AAAGGAAAAAA-TGGGCACATTCCATTCAGAGATTCAAAACTGACACGCATACTTCAGTC 1250
Query 1362 TTCTTTGGGAGGAAATGCAAGAACTGCCATAATTTGCACTA-TGAGTCCTGCGAGAATCC 1420
||| |||||||||||||| ||||| |||||||| ||||| | | |||||||| ||||| |
Sbjct 1251 TTCCTTGGGAGGAAATGCCAGAACAGCCATAATCTGCAC-ACTAAGTCCTGCAAGAATAC 1309
Query 1421 ATGTTGAACAATCAAGAAACACACTGTTATTTGCAAGCTGCGCAAAGGAGGTGACAACAA 1480
||||||| ||||| ||||||||| |||||||||| ||||| |||||||||||||||||||
Sbjct 1310 ATGTTGAGCAATCTAGAAACACATTGTTATTTGCGAGCTGTGCAAAGGAGGTGACAACAA 1369
Query 1481 ATGCACAAGTCAATGTTGTCATGTCTGATAAAGCTTTAGT-AAAGCACTTGCAGAGGGAG 1539
||||||||||||| || |||||||||||||||||| | || ||| || || ||||| |||
Sbjct 1370 ATGCACAAGTCAACGTCGTCATGTCTGATAAAGCTCTGGTTAAA-CATTTACAGAGAGAG 1428
Query 1540 TTGGCTAAACTGGAAAGTGAGTTGAGAAGCCCTAGTCAGGCT-TCAATTGTTTCTGACAC 1598
||||||||| |||| ||||||||||| |||||| |||| ||| | |||| ||||||||
Sbjct 1429 TTGGCTAAATTGGAGAGTGAGTTGAGCAGCCCTCGTCAAGCTCTGG-TTGTGTCTGACAC 1487
Query 1599 AACTGCATTACTGACGGAGAAAGACCTTGAGGTTGAAAAGCTTAAGAAAGAGGTATTCCA 1658
|||||||||||||| ||| |||||||| | | |||||||| || ||||||||||||||
Sbjct 1488 AACTGCATTACTGAAGGATAAAGACCTCCAAATCGAAAAGCTAAATAAAGAGGTATTCCA 1547
Query 1659 ACTAGCACAACAACTAGAGCAAG-CTCGTTC-CGAGATTAAGGATCTTCGAC-GAATGGT 1715
|||||||||| || ||||| | | || ||| || |||| ||||||||| || || | |
Sbjct 1548 ACTAGCACAAGAATTAGAG-AGGGCTTATTCTCG-GATTGAGGATCTTCAACAGATTA-T 1604
Query 1716 TGAAGAAGaaaaaaaCCAAGAAAAAGAGACGCTATCAACAGA---A-A-CAGA-AGGGTT 1769
|||||||| ||| ||||||||| |||||||||| | | |||| |
Sbjct 1605 TGAAGAAGGC-----CCAC-AAAAAGAGATATTATCAACAGACTCAGAACAGACAAACAC 1658
Query 1770 AAATGTTCTGATGGAACATCAATACCCCAAGCTGCGGGTGCGCAGGACATGGGA--CTCT 1827
|||||| | ||| || ||| |||||||||||||| ||||| || ||||||| ||||
Sbjct 1659 AAATGTGGTTCTGGGACGTCAGTACCCCAAGCTGCGTGTGCGTAGTTCATGGGAGTCTCT 1718
Query 1828 GAGAATACAACACCACTGAGCCCTATATCAGCTCAC-CGTTCCAGTAT-ATCTCC--ACG 1883
| |||| ||||||| |||||| ||||||| || ||| ||| ||| || ||| ||
Sbjct 1719 -A-AATATAACACCAGAAAGCCCTCTATCAGCGCAAGCGT-CCATTATGATTTCCCCACA 1775
Query 1884 ATCAACTGAATATAGTTATGAAGAGAATGTCTTTC-AGCTAT-CAGA-TTTCAGGATAGA 1940
|||||| ||| || ||| ||| |||||||| |||| |||| | |||| ||| ||| || |
Sbjct 1776 ATCAACCGAACATGGTTCTGACGAGAATGT-TTTCCAGCT-TGCAGACTTT-AGGTTAAA 1832
Query 1941 TTCTGCAT-CAAGTAGTCC-GC--AACAGCTTGCGTTTGTAACTCCT 1983
||| | | |||||||||| || |||| ||| ||||||||||||||
Sbjct 1833 TTCGGG-TGCAAGTAGTCCAGCCCAACATCTTACGTTTGTAACTCCT 1878
Score = 586 bits (317), Expect = 4e-166
Identities = 1063/1399 (76%), Gaps = 147/1399 (11%)
Strand=Plus/Plus
Query 2306 CAGAGACAAAGAAC-TTACAACATCCCACAGAAGCTGAAAACgaagaagaa-gaagaaga 2363
||||| |||||||| | | | || || |||||| ||| || |||||| || ||||||||
Sbjct 2063 CAGAGTCAAAGAACGTAAGACCA-CCAACAGAAACTG--AA-GAAGAA-AAGGAAGAAGA 2117
Query 2364 agaaagaGTAAAGGAAGTCAGTGGTG-CT-TCTCCTGAACCAAAACAAG-AAAG-CAACC 2419
||||||||| |||||||||||| ||| || | ||| |||| ||| || |||| |||
Sbjct 2118 AGAAAGAGTGAAGGAAGTCAGTAGTGTCTCTATCC--AACC-AAAGGAGAAAAGTGGACC 2174
Query 2420 TCACAAAAAATC-CTGCATTG-TGTGATTTGGAATGTTCACCTGATGAGT--T-TGATAC 2474
| ||| || || || | |||| |||| | || | |||| || | | | | |
Sbjct 2175 -GA-TCAAAGTCTCTCCA-CGCTGTGTTTTGTCA-CTT-A-CTGACGAATCATATCCT-C 2227
Query 2475 A--AG-CATGTCTAACCTGAGTAGA-ATCTCAACACCTCCAGCCCTTATCACTCCCTCTC 2530
| || | | |||||||| || ||| | | |||||| || || || ||||||| ||||
Sbjct 2228 ATGAGTC-T-TCTAACCTCAGAAGAGA-CCCAACACATCAAGATTTTGTCACTCCATCTC 2284
Query 2531 CTGAAAAGCCTTTC-T-CTTGG-ATTATGGAGAGAGATTCAC-AACTTTTCAGAGGAATG 2586
|||||||||| || | ||||| | | | |||||| |||| | ||| | |||| |||
Sbjct 2285 CTGAAAAGCC--TCATGCTTGGCA-TCTTGAGAGAAATTCGCAAACAGCT-GGAGGCATG 2340
Query 2587 AAGCTGACTAGAAGTCGAAGCTGCCGACCAAGCTTAT-TATCGAGCCCTTCCTCCTCT-T 2644
| | |||||||| ||||||||| || ||||||| | |||| ||| |||||| ||| |
Sbjct 2341 GGGTTTACTAGAAGCCGAAGCTGCGGAGCAAGCTT-TGTATCAAGCTCTTCCTTTTCTAT 2399
Query 2645 GGT-TAGAGAAAGATGCTGATACACCGCCAAGCTGGTACGACAAAGAATTTATCAAAACA 2703
|| | |||| ||||||| | ||||| ||||||||||| | || | || ||| |
Sbjct 2400 -GTCT-GAGAGAGATGCTAACACACCACCAAGCTGGTA--TC--AG-A---AT-GAAAGA 2448
Query 2704 GCTGAGAGAAACTTGACAA-TGTGCGACATCAAGA-ACCAGAGATTGTTGCAGGATGAGT 2761
|||||||| ||| ||| || || | ||| ||||| ||| |||| || || | |
Sbjct 2449 GCTGAGAGCAACCTGA-AACCGTACAACAACAAGAGGCCA-CCATTG--CCA-AATCA-T 2502
Query 2762 -TTAGTGGGAGGAGCATGCCAACAACTTGGTTCGAGAGAAG-CTTGAGTGACACTCAAAC 2819
|||| ||| |||||||||| ||||||||||||||| ||| ||| | | |
Sbjct 2503 ATTAGCCGGATGAGCATGCCAGCAACTTGGTTCGAGA-AAGACTT---T-----T--TA- 2550
Query 2820 GGTGGATGCTGCTTCACATGGTGTCAGCAACGAAATGTCGCCAAATGAATCACCA--TTT 2877
| ||| || || || | || | || || | | || ||||||| |||| || |||
Sbjct 2551 GATGG-TGGTG-TT-A-AT-AAG--AG-AAAGTCA--TCACCAAATGGATCA-CAGGTTT 2599
Query 2878 CGGCCATCT-GATGCTTC-TGTGTTTG-AGCTCCAGACAAGTGGTAGAGCTTCAAT-AAG 2933
| || ||| || | || | ||| || | | |||||||||||||||||||| ||| ||
Sbjct 2600 C-TCCCTCTAAAT-C-TCTTCTGTATGCA-CGCCAGACAAGTGGTAGAGCTTTAATCAA- 2654
Query 2934 CCAGGACAGAA-CAGAGGAGACTGCTGCTCAAAAAGACAAGCAAATCATTCATCGATCGA 2992
||| ||| ||| || ||||||| | |||||| ||||||| ||||||||| | |||||
Sbjct 2655 CCAAGAC-GAAGGTGAAGAGACTGTTCCTCAAAGGGACAAGCGAATCATTCACCTATCGA 2713
Query 2993 TGGAGGAAAGGGAACAGAAGTTCTTGGCCTCGAA-TTCAACGAAGAGTTTCAAGGACGCA 3051
||||||| | || || |||||||||| ||| || || | |||||||||||||||||
Sbjct 2714 TGGAGGAGATAGAGCAAAAGTTCTTGG-CTCTAAGATCGTCAAAGAGTTTCAAGGACGCT 2772
Query 3052 GCAATGGACCCAATACAAGACTACTTAGA-CACGGCC-TTGAATTGGCCAG-TGGAGTTC 3108
|| | ||||| ||||||||||| ||| | || ||| ||||| ||||| | |||| |||
Sbjct 2773 GCGGTTGACCCCATACAAGACTATTTA-ACCA-TGCCATTGAACTGGCC-GTTGGAATTC 2829
Query 3109 AAGAGGCTAC-AGAGGGAGATAATAGAGCTATGGCACG-TGTGTAAAGTCTCAATGGCAC 3166
||||| || | ||| ||||||||||||||||||||| | | || || || || || |||
Sbjct 2830 AAGAGACT-CGAGATGGAGATAATAGAGCTATGGCATGCT-TGCAACGTTTCCTTGTCAC 2887
Query 3167 ACAGAAGCTACTTCTTCCTTCTGTTCAGAGGAGATCAGAAAGATTGCTTGTACTTGGAGG 3226
||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2888 ACAGAAGTTACTTCTTCCTTCTCTTCAGAGGAGATCAGAAAGATTGCTTGTACATGGAGG 2947
Query 3227 TAGAGCTCCGTAGACTTAAGTACATCAGAG-AATCTTTCGCCCAAAATAGC-AA-CGAT- 3282
| || |||||||| || ||||||||||||| || |||| |||| |||| | || | ||
Sbjct 2948 TCGAACTCCGTAGGCTCAAGTACATCAGAGAAACCTTT-ACCCACAATAACAAAGCTATA 3006
Query 3283 GGCAACAATATG-AC-C---C-T-AATCTCCTGCAC-GAGGGCATT-GACGAGGGAGAGG 3333
| ||| | | || | | | ||| ||| || | |||||| || || |||||||||
Sbjct 3007 GAAAAC-GGACGCACTCTTACATCAATGTCCAGC-CTGAGGGCGTTAAAC-AGGGAGAGG 3063
Query 3334 TATAAGCTGAG-CAAGCTGATGCAGAGGAAACTGTCGAAAGAAGAGAGAGAGAACTTGTT 3392
|||||||| || | || ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 3064 TATAAGCTAAGTC-AGATGATGCAGAAGAAACTGACGAAAGAAGAGAGAGAGAACTTGTT 3122
Query 3393 CTTGAGATGGGGCATTGGGCTCAACACGAATCACAGACGGGTCCAGCTGGCGCGTCGTCT 3452
||||||||||||||||||||| ||||| || ||||| ||| |||||||||||| ||||||
Sbjct 3123 CTTGAGATGGGGCATTGGGCTGAACACAAAGCACAGGCGGCTCCAGCTGGCGCATCGTCT 3182
Query 3453 CTGGTCGGATTA-CAAAGACATGGGTCATGTCCGAGAGAGCGCCTCCCTCGTTGGTAAGC 3511
|||||| || | ||||||||||| ||||||||||||||||||||| | || || ||||
Sbjct 3183 CTGGTCAGAA-AGCAAAGACATGGATCATGTCCGAGAGAGCGCCTCAGTTGTGGGAAAGC 3241
Query 3512 TCAATGGG-TTCGTGGACATGAAGTTGACTTCCACAG-AGATGTTTGGCGTCAACTA-TG 3568
||| |||| |||||||||||| | ||| | |||| || | ||||||||| |||||| |
Sbjct 3242 TCA-TGGGGTTCGTGGACATGGATTTGGCGTCCA-AGGAAATGTTTGGCCTCAACTTCT- 3298
Query 3569 CT-TTCAGACCACCACGTCCCAAGAAATCTAGTCTTTGGAAACGCAGCGTTTTGTCCCTC 3627
|| || ||||| || |||||||||||||||| || |||||||||||||||||||| ||
Sbjct 3299 CTCTT-AGACC-CC--GTCCCAAGAAATCTAGCCTATGGAAACGCAGCGTTTTGTCACTA 3354
Query 3628 TCCTTTTTGTAACTA-CTG 3645
||| ||||||| || |||
Sbjct 3355 TCCAATTTGTAATTAACTG 3373
> Ahg929419 jgi|Araly1|929419|scaffold_301876.1
Length=2110
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1180 TTCATTGATCTTGCTGGAAGTGAACGTG 1207
||||||||||||||||||||||||||||
Sbjct 1216 TTCATTGATCTTGCTGGAAGTGAACGTG 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141307768549
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5