BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66320.1
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1 2222 0.0
> Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1
Length=1443
Score = 2222 bits (1203), Expect = 0.0
Identities = 1370/1448 (95%), Gaps = 22/1448 (2%)
Strand=Plus/Plus
Query 48 AAGGGAGAGGCTGAGATTACCAAATTGAATGCTTTACCAAACTCACATAACCAtctcttc 107
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 5 AAGGGAGAGGCTGAGATTACCAAATTTAATGCTTTACCAAACTCACATAACCA--TC-TC 61
Query 108 ttgacccttttctttaatct-ttaat-ctctttcttcttcttcttcttcttcttcttctc 165
|||| || ||| |||||||| || | ||| || ||||||||||||||||||||||||||
Sbjct 62 TTGATCCATTT-TTTAATCTCTT--TCCTC-TTATTCTTCTTCTTCTTCTTCTTCTTCTC 117
Query 166 gccaccgctccttcctccctccttctctc--tGTATCAG-tttttttCTCGATAGGAAAA 222
|||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||| ||
Sbjct 118 GCCACCGCTCCTTCCTCCTTCCTTCTCTCTGTGTATCAGCTTTTTTT-TCGATAGGACAA 176
Query 223 TGGAACAAGCCGCGTTGAAGAGCAGCGTCAGGAAAGAGATGGCTCTCAAAACGACTTCTC 282
|||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 177 TGGAACAAACAGCGTTGAAGAGCAGCATCAGGAAAGAGATGGCTTTCAAAACGACTCCTC 236
Query 283 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAAAATGGCTTTTCCGTCGACGATT 342
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 237 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAGAATGGCTTTTCCCCCGAGGATT 296
Query 343 TCTCTGTAGACGACTTGCTTGACTTGTCAAACGATGACGTTTTTGCCGACGAAGAAACTG 402
|||| || |||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 297 TCTCCGTCGACGACTTGCTTGACTTGTCTAACGATGACGTTTTCGCCGACGAAGATACTG 356
Query 403 ACCTCAAGGCTCAACATGAGATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 462
||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACCCCAAGGCTCAACAAGATATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 416
Query 463 ACGCTCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 522
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 ACGCCCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 476
Query 523 GCGAACTCTCTCTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 582
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCGAACTCTCTGTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 536
Query 583 AGGACTCCTTCACGGAATATTCGGGTCCAAACCTCACCGGAACCCCGACTGAGAAACCGG 642
| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 ATGACTCCTTCGCGGAATATTCGGGTCCAAACCTCACCGGAACCCCCACTGAGAAACCGG 596
Query 643 CGTGGTTAACGGGTGACCGGAAACATCCTGTGACTGCAGTCACGGAAGAGACCTGTTTCA 702
||||||||||||||||||||||||| ||||||||| | | |||||||||| |||||||||
Sbjct 597 CGTGGTTAACGGGTGACCGGAAACACCCTGTGACTCCGGCCACGGAAGAGTCCTGTTTCA 656
Query 703 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGCCTCAAGGTCTGGT 762
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGAGTCAAGGTCTGGT 716
Query 763 CGCTTGGttcgtcgtcctcctcgggtccttcctcgtccggttcgacctcctcctcctctt 822
| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 717 CTCTTGGTTCGTCGTCCTCTTCAGGTCCTTCCTCGTCCGGTTCGACCTCCTCCTCTTCTT 776
Query 823 cgggtccttccAGCCCGTGGTTCTCCGGCGCTGAGCTGCTCGAGCCTGTGGTCACGTCAG 882
|| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 777 CGCGTCCTTCCAGCCCGTGGTTCTCCGGCGCTGAGATGCTCGAGCCAGTGGTCACGTCAG 836
Query 883 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCAGCCGAGTCTGTTTTCTCCGGTG 942
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 837 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCGGCCGAGTCTGTTTTCTGCGGTC 896
Query 943 AGCTGCAGCAGCTGCAACCTCAGCGAAAGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 1002
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 897 AGCTGCAGCAGCTGCAACCTCAGCGAAGGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 956
Query 1003 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1016
Query 1063 AGTCGGGTAGGTTGCTACCGGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1122
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGTCGGGTCGGTTGCTACCTGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1076
Query 1123 TGCACTCGAACCACCACCGGAAAGTCATAGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1182
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1077 TCCACTCGAACCACCACCGGAAAGTCATGGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1136
Query 1183 ACAACGAAACCGGTTTAAACCAGCTGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACAACGAAACCGGTTTAAACCAGATGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1196
Query 1243 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAACCGGTTCAGTTGTTAGCCCC 1302
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1197 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAGCCGGTTCAGTTGTTAGCCCC 1256
Query 1303 AAGTTAGTTTCTCATTGACTTGTTTCTTTGTATATTACTTTCATTATTTTTAGCATTTAC 1362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1257 AAGTTAGTTTCTCATTGACTTGTTTCTT-GTATATTACTTTCATTATTTTTAGCATTTAC 1315
Query 1363 ttttttttt----GTTACAGTAGTTTGATTTTTCATGCTAGGAGTATCCGTAAGTTCTTA 1418
||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1316 TTTTTTTTTTTTTGTTACCGTAGTTTGATTTTTCATGCTAGGAGTCTCCGTAAGTTCTTA 1375
Query 1419 GTAACTGATTAGGTCAAAAA----CTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1474
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1376 GTAACTGATTAGGTAAAAAAAAAACTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1435
Query 1475 AGTTTAAA 1482
|||| |||
Sbjct 1436 AGTTCAAA 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55916479660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5