BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66320.1 Length=1494 Score E Sequences producing significant alignments: (Bits) Value Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1 2222 0.0 > Ahg496973 jgi|Araly1|496973|fgenesh2_kg.8__2789__AT5G66320.1 Length=1443 Score = 2222 bits (1203), Expect = 0.0 Identities = 1370/1448 (95%), Gaps = 22/1448 (2%) Strand=Plus/Plus Query 48 AAGGGAGAGGCTGAGATTACCAAATTGAATGCTTTACCAAACTCACATAACCAtctcttc 107 |||||||||||||||||||||||||| |||||||||||||||||||||||||| || || Sbjct 5 AAGGGAGAGGCTGAGATTACCAAATTTAATGCTTTACCAAACTCACATAACCA--TC-TC 61 Query 108 ttgacccttttctttaatct-ttaat-ctctttcttcttcttcttcttcttcttcttctc 165 |||| || ||| |||||||| || | ||| || |||||||||||||||||||||||||| Sbjct 62 TTGATCCATTT-TTTAATCTCTT--TCCTC-TTATTCTTCTTCTTCTTCTTCTTCTTCTC 117 Query 166 gccaccgctccttcctccctccttctctc--tGTATCAG-tttttttCTCGATAGGAAAA 222 |||||||||||||||||| |||||||||| |||||||| ||||||| ||||||||| || Sbjct 118 GCCACCGCTCCTTCCTCCTTCCTTCTCTCTGTGTATCAGCTTTTTTT-TCGATAGGACAA 176 Query 223 TGGAACAAGCCGCGTTGAAGAGCAGCGTCAGGAAAGAGATGGCTCTCAAAACGACTTCTC 282 |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 177 TGGAACAAACAGCGTTGAAGAGCAGCATCAGGAAAGAGATGGCTTTCAAAACGACTCCTC 236 Query 283 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAAAATGGCTTTTCCGTCGACGATT 342 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| Sbjct 237 CGGTTTACGAAGAGTTTCTTGCCGTCACCACCGCTCAGAATGGCTTTTCCCCCGAGGATT 296 Query 343 TCTCTGTAGACGACTTGCTTGACTTGTCAAACGATGACGTTTTTGCCGACGAAGAAACTG 402 |||| || |||||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 297 TCTCCGTCGACGACTTGCTTGACTTGTCTAACGATGACGTTTTCGCCGACGAAGATACTG 356 Query 403 ACCTCAAGGCTCAACATGAGATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 462 ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 357 ACCCCAAGGCTCAACAAGATATGGTCCGTGTTTCCTCTGAGGAACCCAACGACGACGGAG 416 Query 463 ACGCTCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 522 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 ACGCCCTTCGCCGGAGCAGCGATTTCTCCGGCTGTGACGACTTTGGTTCTCTCCCTACAA 476 Query 523 GCGAACTCTCTCTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 582 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GCGAACTCTCTGTTCCGGCGGATGATTTAGCGAACCTTGAGTGGCTCTCTCATTTCGTGG 536 Query 583 AGGACTCCTTCACGGAATATTCGGGTCCAAACCTCACCGGAACCCCGACTGAGAAACCGG 642 | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 537 ATGACTCCTTCGCGGAATATTCGGGTCCAAACCTCACCGGAACCCCCACTGAGAAACCGG 596 Query 643 CGTGGTTAACGGGTGACCGGAAACATCCTGTGACTGCAGTCACGGAAGAGACCTGTTTCA 702 ||||||||||||||||||||||||| ||||||||| | | |||||||||| ||||||||| Sbjct 597 CGTGGTTAACGGGTGACCGGAAACACCCTGTGACTCCGGCCACGGAAGAGTCCTGTTTCA 656 Query 703 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGCCTCAAGGTCTGGT 762 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 657 AATCCCCTGTTCCGGCTAAAGCCCGTAGCAAACGTAACCGCAATGGAGTCAAGGTCTGGT 716 Query 763 CGCTTGGttcgtcgtcctcctcgggtccttcctcgtccggttcgacctcctcctcctctt 822 | ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 717 CTCTTGGTTCGTCGTCCTCTTCAGGTCCTTCCTCGTCCGGTTCGACCTCCTCCTCTTCTT 776 Query 823 cgggtccttccAGCCCGTGGTTCTCCGGCGCTGAGCTGCTCGAGCCTGTGGTCACGTCAG 882 || |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 777 CGCGTCCTTCCAGCCCGTGGTTCTCCGGCGCTGAGATGCTCGAGCCAGTGGTCACGTCAG 836 Query 883 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCAGCCGAGTCTGTTTTCTCCGGTG 942 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 837 AGAGGCCACCGTTTCCCAAGAAGCATAAGAAAAGGTCGGCCGAGTCTGTTTTCTGCGGTC 896 Query 943 AGCTGCAGCAGCTGCAACCTCAGCGAAAGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 1002 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 897 AGCTGCAGCAGCTGCAACCTCAGCGAAGGTGCAGCCACTGCGGCGTTCAGAAAACTCCGC 956 Query 1003 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 AGTGGAGAGCCGGGCCAATGGGAGCCAAGACCCTGTGCAATGCGTGCGGTGTCCGGTACA 1016 Query 1063 AGTCGGGTAGGTTGCTACCGGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1122 |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1017 AGTCGGGTCGGTTGCTACCTGAATACAGACCCGCTTGTAGCCCGACATTCTCGAGTGAGC 1076 Query 1123 TGCACTCGAACCACCACCGGAAAGTCATAGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1182 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1077 TCCACTCGAACCACCACCGGAAAGTCATGGAGATGAGGCGGAAGAAGGAGCCAACCAGTG 1136 Query 1183 ACAACGAAACCGGTTTAAACCAGCTGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1242 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1137 ACAACGAAACCGGTTTAAACCAGATGGTTCAGTCCCCACAAGCTGTACCAAGTTTTTGAA 1196 Query 1243 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAACCGGTTCAGTTGTTAGCCCC 1302 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1197 GAAATAGGGCCTTAATTAGAGCAGAGATTTAGGATCCGAGCCGGTTCAGTTGTTAGCCCC 1256 Query 1303 AAGTTAGTTTCTCATTGACTTGTTTCTTTGTATATTACTTTCATTATTTTTAGCATTTAC 1362 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1257 AAGTTAGTTTCTCATTGACTTGTTTCTT-GTATATTACTTTCATTATTTTTAGCATTTAC 1315 Query 1363 ttttttttt----GTTACAGTAGTTTGATTTTTCATGCTAGGAGTATCCGTAAGTTCTTA 1418 ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 1316 TTTTTTTTTTTTTGTTACCGTAGTTTGATTTTTCATGCTAGGAGTCTCCGTAAGTTCTTA 1375 Query 1419 GTAACTGATTAGGTCAAAAA----CTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1474 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1376 GTAACTGATTAGGTAAAAAAAAAACTCGTTTGTATTGTACTCTTTCGCGTTAATTTTTTC 1435 Query 1475 AGTTTAAA 1482 |||| ||| Sbjct 1436 AGTTCAAA 1443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55916479660 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5