BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66330.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg936302 jgi|Araly1|936302|scaffold_500493.1 1375 0.0
Ahg951607 jgi|Araly1|951607|scaffold_803494.1 453 2e-126
> Ahg936302 jgi|Araly1|936302|scaffold_500493.1
Length=1279
Score = 1375 bits (744), Expect = 0.0
Identities = 1074/1234 (87%), Gaps = 19/1234 (2%)
Strand=Plus/Plus
Query 211 TTATCTTCAGCAGAGTCCAAGACTTTCTGGGGTGACGTGGCAGCTCTCAAAGACTTCAAG 270
||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| || ||
Sbjct 60 TTATCTTCAGCAGAGTCCAAGACTTACTGGGGTGATGTGACAGCTCTCAAAGAGTTGAAA 119
Query 271 AACTCAGTGGATGCCAAATCCATGAGTCCAGGCTCTTGCCTGAGTTCTTGGGATTTCTCC 330
|||||||| ||||||||||| ||| ||||||||||||| |||||| | ||||| ||||||
Sbjct 120 AACTCAGTAGATGCCAAATCGATGCGTCCAGGCTCTTGTCTGAGTACCTGGGACTTCTCC 179
Query 331 GTCGATCCCTGCGACAATATATTCAGCGACACATTCACTTGTGGGTTCCGCTGCGACTCC 390
|||||||||||||||| | | ||||| ||||||||||| | | | || | | ||||
Sbjct 180 GTCGATCCCTGCGACAGTGTCTTCAGTGACACATTCAC-T-T--G---CG--G-G-CTCC 228
Query 391 GTCGTTACCGGATCGGGTCGGGTCACGGAGCTCAGTCTGGACCAAGCCGGTTACTCAGGC 450
| | | || ||||||||||||||||||||| ||| | ||||| || |||||||| |||
Sbjct 229 G-C--T-GCGTATCGGGTCGGGTCACGGAGCTTAGTTTTGACCAGGCAGGTTACTCCGGC 284
Query 451 TCCCTCTCCTCCGTCTCTTTCAACCTTCCTTATCTCCAGACCCTCGATCTCTCCGGCAAC 510
|||||||||||| |||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 285 TCCCTCTCCTCCTTCTCCTTCAACCTCCCTTATCTCCACACCCTCGATCTCTCCGGCAAC 344
Query 511 TACTTCTCCGGTCCACTTCCCGACTCGCTCTCCAATCTCACCCGTCTCACCCGCCTCACT 570
||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| |
Sbjct 345 TACTTCTCCGGTCCACTCCCCGACTCACTCTCCAATCTCACTCATCTCACCCGCCTCGCC 404
Query 571 GTGTCCGGAAACTCCTTTTCCGGATCCATACCCGATTCAGTCGGGTCAATGACGGTTCTT 630
| |||| ||||||||| || ||||||||||||||||| ||||||| || || ||||
Sbjct 405 CTCTCCGCAAACTCCTTCTCAGGATCCATACCCGATTCTCTCGGGTCGTTGTCGCTTCTC 464
Query 631 GAGGAGCTCGTGCTAGACAGCAACCGCCTCTACGGCTCCATTCCGGCGAGCTTCAATGGC 690
||||||||| | || ||| | |||| ||| ||||||| |||||| ||| ||||| ||
Sbjct 465 GAGGAGCTCCTCCTCGACGGAAACCATCTCGACGGCTCTGTTCCGGTGAGTTTCAACGGT 524
Query 691 CTTTCCAGCCTGAAACGACTGGAAATCCAGCTAAACAACATCTCCGGCGAATTCCCTGAT 750
||||||| ||| ||||| || | |||||| | ||||||||||||||||| ||||| |||
Sbjct 525 CTTTCCAACCTAAAACGGCTACAGATCCAGGTCAACAACATCTCCGGCGAGTTCCCCGAT 584
Query 751 CTGAGCTCACTCAAAAACCTGTATTACCTCGACGCGAGCGATAACCGCATCTCCGGTCGG 810
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 585 CTGAGCTCACTCAAAAACCTGTATTTCCTCGACGCTAGCGATAACCGCATCTCGGGTCGG 644
Query 811 ATCCCATCATTTTTACCCGAATCTATAGTCCAAATCTCAATGCGAAACAACCTCTTCCAA 870
||||| |||| ||||| |||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 645 ATCCCGTCATCGTTACCGGAATCTCTAGTCCAAATCTCCATGCGAAACAACCTCATCCAT 704
Query 871 GGAACGATCCCTGAAAGCTTCAAACTTCTAAATTCTCTCGAAGTAATCGATCTTAGCCAC 930
||||| |||||| |||| ||||||||| | || |||||| |||| |||||||||| ||||
Sbjct 705 GGAACCATCCCTCAAAGGTTCAAACTTTTCAACTCTCTCCAAGTGATCGATCTTACCCAC 764
Query 931 AACAAACTCAGTGGCTCAATCCCATCGTTTATCTTCACTCATCAGTCTCTACAGCAGCTA 990
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 765 AACAAACTCAGCGGCTCAATCCCATCCTTCATCTTCACTCATCAGTCTCTACAGCAGCTA 824
Query 991 ACACTCTCCTTCAATGGCTTCACCTCTTTAGAGTCACCCTACTATTCTCCCTTGGGTCTC 1050
||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| |||||
Sbjct 825 ACACTATCCTTCAATGGCTTCACCTCTTTAGATTCACCTTACTATTCCCCCTTGAGTCTC 884
Query 1051 CCCAGCGAGCTCATATCCGTAGATCTCAGCAACAATCAGATCCTCGGTGCGTTACCTCTG 1110
|||||||||||||||||| | |||||||||||||| | ||||| || | ||||||||||
Sbjct 885 CCCAGCGAGCTCATATCCATCGATCTCAGCAACAACCGGATCCAAGGCGTGTTACCTCTG 944
Query 1111 TTCATGGGTCTATCACCAAAGCTCTCAGCATTGTCGTTAGAGAACAACAAGTTCTTTGGT 1170
||| | ||||||| ||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 945 TTCTTTGGTCTATTACCAAAGCTCTCAGCTTTGTCCTTGGAGAACAACAACTTCTTTGGT 1004
Query 1171 ATGATTCCGACCCAGTACGTCTGGAAAACCGTATCGCCCGGATCCGAATTCGCCGGGTTT 1230
|||||||||||||| || || ||||||||||||||| |||||||||| ||||||||||||
Sbjct 1005 ATGATTCCGACCCAATATGTTTGGAAAACCGTATCGTCCGGATCCGAGTTCGCCGGGTTT 1064
Query 1231 CAGAGACTTTTACTAGGCGGAAATTTCTTATTCGGAGTCGTACCGGGTCCTTTGATGGCG 1290
|||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1065 CAGAGACTCTTACTAGGCGGGAATTTCTTATTCGGTGTCGTACCGGGTCCTTTGATGGCC 1124
Query 1291 TTAAAGCCTGGATCAGCGAACGTGCAGCTCGCCGGAAACTGCTTCTCATGGTGTCCGGCG 1350
| |||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1125 CTCAAGCCTGGCTCAGCCAACTTGCAGCTCGCCGGAAACTGCTTCTCGTGGTGTCCGGCG 1184
Query 1351 ACGTTATTCTTCTGCCAAGGACAAGAACAGAGATCTCCGAAGGAATGTAGAAAGTTTAGC 1410
|| || |||||||||||||| ||||| ||||||||||| | |||||| ||||||||||||
Sbjct 1185 ACCTTGTTCTTCTGCCAAGGGCAAGAGCAGAGATCTCCTACGGAATGCAGAAAGTTTAGC 1244
Query 1411 CG-CGTCGTCCCGTAATCTTCTC-TTTCCTTGTT 1442
|| | | ||| | |||||||| |||| |||||
Sbjct 1245 CGTCTTATTCCA-TGATCTTCTCGTTTC-TTGTT 1276
> Ahg951607 jgi|Araly1|951607|scaffold_803494.1
Length=355
Score = 453 bits (245), Expect = 2e-126
Identities = 314/346 (91%), Gaps = 9/346 (3%)
Strand=Plus/Plus
Query 1103 TACCTCTGTTCATGGGTCTATCACCAAAGCTCTCAGCAT-TGTCGTTAGAGAACAACAAG 1161
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 10 TACCTCTGTTCATGGGTCTATCACCAAAGCTCTCAGC-TCTGTCGTTAGAGAACAACAAC 68
Query 1162 TTCTTTGGTATGATTCCGACCCAGTACGTCTGGAAAAC-CGTATCGCCCGGATCCGAATT 1220
||| ||||||||||||||||| ||||||||||| |||| |||||| || |||||||||||
Sbjct 69 TTCCTTGGTATGATTCCGACCGAGTACGTCTGG-AAACTCGTATCTCCTGGATCCGAATT 127
Query 1221 CGCCGGGTTTCAGAGACTTTTACTAGGCGGAAATTTCTTATTCGGAGTCGTACCGGGTCC 1280
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 128 CGCCGGGTTTCAGACACTATTACTAGGCGGGAATTTCTTATTCGGAGTCGTACCGGGTCC 187
Query 1281 TTTGATGGCGTTAAAGCCTGGATCAGCGAACGTGCAGCTCGCCGGAAACTGCTTCTCATG 1340
|||||||||| | |||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 188 TTTGATGGCGATGAAGCCTGGATCAGCGAACGTACAGCTAGCCGGAAACTGCTTCTCGTG 247
Query 1341 GTGTCCGGCGACGTTATTCTTCTGCCAAGGACAAGAACAGAGATCTC-CGAA-GGAATGT 1398
|||||||||||| ||||| ||||| ||||| |||||||||||||||| | | ||||||
Sbjct 248 GTGTCCGGCGACCTTATTTTTCTGTCAAGGGCAAGAACAGAGATCTCTCCTACGGAATGC 307
Query 1399 AGAAAGTTTAGCCGCGTCGTCCCGTA--ATCTTCTCTTTCCTTGTT 1442
||||||||||||||||| |||| || ||||||||||| ||||||
Sbjct 308 AGAAAGTTTAGCCGCGTTATCCC-TATGATCTTCTCTTTTCTTGTT 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5