BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66350.1
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951606 jgi|Araly1|951606|scaffold_803493.1 1502 0.0
> Ahg951606 jgi|Araly1|951606|scaffold_803493.1
Length=1045
Score = 1502 bits (813), Expect = 0.0
Identities = 972/1046 (93%), Gaps = 21/1046 (2%)
Strand=Plus/Plus
Query 407 ATGGCTGGTGGTATCGGAAAATGGCAGGATTTTTCTCGTTAGGACACGGCGGAGGAGGAA 466
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1 ATGGCTGGTGGTATCGGAAAATGGCAGGATTTTTCTCGCTAGGACAAGGCGGAGGAGGAA 60
Query 467 ACA--C---TCCAG-AC-A--ACCACAGAACAAACACTAATAATCCTTCTTCATCGGGAA 517
||| | | || || | |||||||||| ||||||| |||||||||||| |||||||
Sbjct 61 ACAGCCAAGACGAGCACAACCACCACAGAACCAACACTACTAATCCTTCTTCCTCGGGAA 120
Query 518 CAGAATCTTGGCTTTGGTGCAGAAACCCTAACTCTAACGCTGACGGTGGAGAAGCTGGTC 577
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 121 CAGAATCTTGGCTTTGGTGCAGAAACCCTAACTCTAACGCTGACGGTGGAGAAGTTGCTC 180
Query 578 CTTCTTACAAAGGAACCCTTGAGCTATGGCAACACCCAAACAATCAAGAAATCATTTTCC 637
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CTTCTTACAAAGGAACCCTTGAGCTATGGCAACATCCAAACAATCAAGAAATCATTTTCC 240
Query 638 AGCAGCAGCAGCAACAGCAACAAAGGCTGGATCTTTACACTTCCGCTGCGGGTTTAGGTG 697
|||||||||||| | || ||||||| |||||||||||||||||||||||||||||||
Sbjct 241 AGCAGCAGCAGC-A-AG----AAAGGCTCGATCTTTACACTTCCGCTGCGGGTTTAGGTG 294
Query 698 TTGGACCGAGCAACCGGAGCTTAATTGAAACTTCCGGCGGTGCGTTGATGATGATGAGAA 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 295 TTGGACCGAGCAACCGGAGCTTAATTGAAACTTCCGGCGGTGCGTTGATGATGATGAGGA 354
Query 758 GCGGTAGCGGTAGCGGCGGACCAAGCTGCCAGGATTGTGGGAATCAATCTAAGAAAGACT 817
|| |||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 GCAGTAGTGGCGGCGGCGGGCCAAGCTGCCAGGATTGTGGGAATCAATCGAAGAAAGACT 414
Query 818 GCTCTCACATGAGATGTAGGACTTGCTGCAAGAGCCGTGGCCTTGACTGTCCCACTCACG 877
|| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 415 GCGCTCACATGAGATGCAGGACTTGCTGCAAGAGCCGAGGCCTTGAGTGTCCCACTCACG 474
Query 878 TGAAGAGCACGTGGGTTCCTGCCGCTAAACGCCGAGAACGCCAGCAGCAGCTTTCTACCG 937
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 475 TGAAGAGCACGTGGGTCCCTGCCGCTAAACGCCGAGAACGCCAGCAGCAGCTTGCTTCCG 534
Query 938 GTCAGCAACCGCA---GCA---ACTGGGAGGGAGCGTCCCTAAACGACAGAGAGAGCGTA 991
|||| |||||||| ||| | ||| | ||||||||||||||| |||||||||| ||
Sbjct 535 GTCAACAACCGCAGTCGCAGCCGCAGGGTGAGAGCGTCCCTAAACGGCAGAGAGAGCATA 594
Query 992 TCCCGGCGAGATCGACTTCCATGGCCTACACTCGTATACCTTCTAACAACACTTCAGGGT 1051
||| |||||||||||||||| ||| || |||||||||||| |||||||||||||||||||
Sbjct 595 TCCAGGCGAGATCGACTTCCCTGGTCTGCACTCGTATACCGTCTAACAACACTTCAGGGT 654
Query 1052 TGGAGGTTGGGAATTTTCCGCCGGAAGTTAGCTCGTCGGCAGTTTTTCGGTGCGTGCGTG 1111
| ||||||||||| ||||||||||||||| | ||| |||| ||||| |||||||||||||
Sbjct 655 TAGAGGTTGGGAACTTTCCGCCGGAAGTTCGGTCGCCGGCGGTTTTCCGGTGCGTGCGTG 714
Query 1112 TGAGTTCCGTAGATGATGAAGAAGAAGAGTATGCATATAAAACAGCTGTGAGTATAGGCG 1171
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 715 TGAGTTCCGTAGATGATGAAGAAGAAGAGTATGCATACAAAACAGCTGTGAGTATAGGTG 774
Query 1172 GTCACGTCTTCAAAGGTGTTCTCTACGATCAAGGCCCGGCCGAGAGAAGCTCCTCGGGCG 1231
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 GTCACGTCTTCAAAGGTATTCTCTACGATCAAGGCCCGGCCGAGAGAAGCTCCTCAGGCG 834
Query 1232 GTGGATCTCAGCCGTTGAATCTCATAACCGCAGGCCCATCGGCCTCATCATCAAGCCCAA 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTGGATCTCAGCCGTTGAATCTCATAACCGCAGGCCCATCGGCCTCATCATCAAGCCCAA 894
Query 1292 ACGTGAGCTGCAACAATGGAGTCGTTGGCTCCACTTCAGATCATTATATCGATCCTGCCT 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ACGTGAGCTGCAACAATGGAGTCGTTGGCTCCACTTCAGATCATTATATCGATCCTGCCT 954
Query 1352 CACTTAATTATCCTACTCCCATTAACACTTTCATGACTGGTACGCACTTCTTCTCCAACT 1411
|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 955 CACTTAGTTATCCTACTCCCATCAACACTTTCATGACTGGTACGCATTTCTTCTCCAACT 1014
Query 1412 CAAGATCTTGAATTCCACACAGAGAG 1437
||||||||||||||| |||| |||||
Sbjct 1015 CAAGATCTTGAATTCTACACTGAGAG 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5