BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66360.2
Length=1334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951605 jgi|Araly1|951605|scaffold_803492.1 1672 0.0
> Ahg951605 jgi|Araly1|951605|scaffold_803492.1
Length=1171
Score = 1672 bits (905), Expect = 0.0
Identities = 1103/1194 (92%), Gaps = 31/1194 (3%)
Strand=Plus/Plus
Query 81 TTCGTGACTGAAGCAAAGTGATGATTCTTCGATTGAAAG-ACCAAACGCTCATCAAAATC 139
||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||||
Sbjct 1 TTCGTGACTGAAGCAAAGTGATGATTCTTCGATTG-AAGAACCAAACGCCCGGCAAAATC 59
Query 140 AATTCAACTCGTTCGTACTTATCTTCCTTAGTTTTCCGACGAGATTCTCACTCGCAGGCT 199
|||| |||||| || ||||||||||||||||||||||||||||| | | || || ||
Sbjct 60 AATTTAACTCGCTCATACTTATCTTCCTTAGTTTTCCGACGAGA-T-T--CT--CA--CT 111
Query 200 CGGACAAAACCCGATCACGACCGCCGGAGAAGAGGATACGAGAGGGATGTGAGAATCGAG 259
| | | | |||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 112 C-G-C---A--CGAT------CGCCGGAGAAGAGGGTACGAGAGGGATGTGGGAATCGAG 158
Query 260 GAGAAGAAGGAACACGATGGATTGTTTCTGTGCAAGAGCAAAGGCCAACACCTTCTTACC 319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 159 GAGAAGAAGGAACACGATGGGTTGTTTCTGTGCAAGAGCAAAGGCCAACACCTTCTTACC 218
Query 320 AACACTAGAATCCTCGACTCCATTGTTCGAAGCTCCGATATCAGGCCGACTGATACAGTC 379
||||| |||||||||||| ||||||| |||||||||||| |||||||||| |||||||||
Sbjct 219 AACACCAGAATCCTCGACGCCATTGTCCGAAGCTCCGATGTCAGGCCGACCGATACAGTC 278
Query 380 TTGGAGATCGGACCTGGCACTGGAAATCTCACGATGAAACTTCTTGAAGCTGCTCAGAAT 439
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 279 TTGGAGATCGGACCTGGTACTGGAAATCTCACGATGAAGCTTCTTGAAGCTGCCCAGGAT 338
Query 440 GTCGTAGCCGTCGAGCTAGATAAGCGTATGGTGGAGATTCTACGCAAAAGGGTTTCTGAC 499
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTCGTAGCCGTTGAGTTAGATAAGCGTATGGTGGAGATTCTACGCAAAAGGGTTTCTGAC 398
Query 500 CATGGTTTTGCAGATAAACTTACGATTATTCAAAAAGATGTTCTGAAGACAGATTTTCCT 559
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 399 CATGGTTTTGCTCATAAACTTACGATTATTCAAAAAGATGTTCTGAAGACAGATTTCCCT 458
Query 560 CACTTTGATCTCGTGGTTGCAAATATTCCTTACAACATATCTTCCCCTCTTGTGGCCAAG 619
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 459 CAGTTTGATCTCGTGGTTGCTAATATTCCTTACAACATATCTTCCCCTCTTGTGGCGAAG 518
Query 620 CTTGTATACGGCTCCAATACTTTTCGAAGCGCCACACTCTTGCTTCAAAAGGAATTCTCC 679
||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||
Sbjct 519 CTTGTATACGGCTCCAACACCTTTCGAAGCGCCACTCTGTTGCTTCAAAAGGAATTCTCC 578
Query 680 CGCCGGCTCCTGGCAAATCCAGGAGATTCCGATTTCAATAGATTGGCGGTGAACGTTAAG 739
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CGCCGGCTCCTGGCGAATCCAGGAGATTCCGATTTCAATAGATTGGCGGTGAACGTTAAG 638
Query 740 TTAGTAGCTGATGTTAAATTTGTGATGGATGTAAGTAAAAGAGAGTTTGTTCCACCTCCT 799
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 639 TTAGTAGCTGATGTTAAATTTGTGATGGATGTGAGTAAAAGAGAGTTTGTTCCACCTCCT 698
Query 800 AAAGTTGATTCATCTGTAATTAGGATTACACCAAAGGAGATAATACCGGATGTTAATGTT 859
||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct 699 AAAGTCGATTCATCTGTAGTTATGATTACACCAAAGGAGATAATACCAGATGTTAATGTT 758
Query 860 CAAGAATGGTTGGCATTCACTCGCACGTGTTTCGGGAAGAAGAATAAGACGCTTGGTTCC 919
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 759 CAAGAATGGCTGGCATTCACTCGCTCGTGTTTCGGGAAGAAGAACAAGACGCTTGGTTCC 818
Query 920 ATGTTTAGGCAGAAGAAAAAGGTCATGGAATTGC-AGAGTTTGTCTGCAGGGAGGCATGG 978
||||||||||||||||| ||||||||||| |||| | ||||||||||||| |||| ||||
Sbjct 819 ATGTTTAGGCAGAAGAAGAAGGTCATGGAGTTGCTA-AGTTTGTCTGCAGAGAGGAATGG 877
Query 979 CTCGAATGTTGAGGTTATGAATCAGACAGGTGGTGATTCTGACAGTGATGTTGAAGAAGA 1038
||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 878 TTCGAAAGTTGGGGTTATGAATCAGACATGTGGTGATTCTGACAGTGATGTTGAAGAAGA 937
Query 1039 TGG-GA----AA-GATGATTTGTTGTGTTTGGATACAGATGCAAGTATGTTCAAGGAAAG 1092
||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGGAGATGGGAAAGATGATTTGTTGTGTTTGGATACAGATGCAAGTATGTTCAAGGAAAG 997
Query 1093 GGTAATTGAAATTCTGAGAACAAATGGGTTCGAAGAGAAGAGACCATCCAAGCTTTCACA 1152
||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 998 GGTTATTGGAATACTGAGAACAAATGGGTTCGAAGAGAAGAGACCATCCAAGCTCTCTCA 1057
Query 1153 TCGTGAGTTGTTACATTTGCTTTCTTTGTTTAACCAAGCTGGAAtttttttCCATGATAT 1212
| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct 1058 TAGTGAGTTGTTACATTTGCTTTCTCTGTTTAACCGTGCTGGAGTTTTTTTCCATGATAT 1117
Query 1213 TACATCATTACAAATGGATCTACACGAATAATGATAAGTTTTCTTTAATGTTTT 1266
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1118 TACATCATTACCAATGGATCTACACGAATCATGATAAGTTTTCTTTAATGATTT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49902898353
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5