BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66370.1

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496970 jgi|Araly1|496970|fgenesh2_kg.8__2786__AT5G66370.1         582    6e-166


> Ahg496970 jgi|Araly1|496970|fgenesh2_kg.8__2786__AT5G66370.1
Length=444

 Score =  582 bits (315),  Expect = 6e-166
 Identities = 410/453 (91%), Gaps = 17/453 (4%)
 Strand=Plus/Plus

Query  1    ATGTTTTCATCAAATAATCGTTCTACACAACTGACTTGTGGGTTTAAGGTGAACACCAAC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGTTTTCATCAAATAATCGTTCTACACAACTGACTTGTGGGTTTAAGGTGAACACGAAC  60

Query  61   TCCTCTGAGTGGTATAAGAGCATCACAAGGATTCTAAAGAAGGTCAAAGGAGGGGATTTT  120
            ||| | |||||| |||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  61   TCCCCAGAGTGGCATAAGAGCATGACAAGGATTCTAAAGAAGATCAAAGGAGGGGATTTT  120

Query  121  TTGTTAGACGCGGACGAAGGAAGAGCATACATTTCGGGTTTAGGAGATCCACATAAACTA  180
            |||||||||| |||| |||||  ||||||||||||||||  |||||| ||| | ||||||
Sbjct  121  TTGTTAGACGTGGACCAAGGACTAGCATACATTTCGGGTGAAGGAGACCCAAACAAACTA  180

Query  181  CTAAAACTAATGGGTTCGGTAAAAGGCAAGGCAGCTGAAATGACGTTTGTGAAAACCGGT  240
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTAAAACTAATGGGTTCGATAAAAGGCAAGGCAGCTGAAATGACGTTTGTGAAAACCGGT  240

Query  241  GGAcatcatcatcatcatcagcatcatTATCCACATGAACCTAATCTTCATTACAACTCC  300
            ||||   | || ||||  || |||  | ||||   | || ||  ||||||||||||||||
Sbjct  241  GGACG--A-CAGCATC--CA-CAT--T-ATCC---T-AATCT--TCTTCATTACAACTCC  285

Query  301  GACTCCTATTACGGCCAGCCACCATCTTACAACAGTTATTGGCCGAGTGATAATTGTTAC  360
             |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct  286  AACTCCTATTACGGCCATCCACCATCTTACAACAGTTATTGGCCGAGTGATGATTGTTAC  345

Query  361  TCTCGCCAGCATCCGCCTTATTATTCTCAGTCACTAGCGATGCAACCTTACCATCACCAA  420
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  346  TCTCGCCAGCATCCGCCGTATTATTCTCAGTCACTAGCGATGCAACCTTACCATCATCAA  405

Query  421  TATCCATATCCAGGTTATAGTA-TCTACGGTTA  452
            |||||||||||||| ||||||| | ||||||||
Sbjct  406  TATCCATATCCAGGATATAGTAAT-TACGGTTA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16368747681


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5