BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66380.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918538 jgi|Araly1|918538|Al_scaffold_0008_3289 1487 0.0
> Ahg918538 jgi|Araly1|918538|Al_scaffold_0008_3289
Length=924
Score = 1487 bits (805), Expect = 0.0
Identities = 887/927 (96%), Gaps = 3/927 (0%)
Strand=Plus/Plus
Query 163 ATGGCGGCGTCGTGGCAGTGGGAAAATGCCACCGCCGGCGCCGTCGCTGGATTCGCCACC 222
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGCCGTGGCAGTGGGAAAACGCCACCGCCGGCGCCGTCGCTGGATTCGCCACC 60
Query 223 GTAGCTGCTATGCACTCTCTTGATGTTGTTCGTACGAGATTCCAAGTCAACGACGGAAGA 282
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTAGCTGCTATGCACCCTCTTGATGTTGTTCGTACGAGATTCCAAGTCAACGACGGTAGA 120
Query 283 GGGTCAAGTCTGCCGACGTACAAGAACACTGCTCACGCTGTCTTCACCATTGCCCGTCTC 342
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGTCAAGTCTCCCGACGTACAAGAACACTGCTCACGCTGTCTTCACCATTGCCCGTCTC 180
Query 343 GAGGGTTTGAGAGGGCTTTATGCAGGCTTCTTCCCTGCAGTTATCGGTTCTACTGTTTCC 402
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGGGTTTGAGAGGACTTTATGCAGGCTTCTTCCCTGCAGTTATCGGTTCTACTGTTTCA 240
Query 403 TGGGGCTTATACTTCtttttttATGGAAGAGCCAAGCAGAGGTACGCTAGAGGCAGGGAC 462
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 TGGGGATTATACTTCTTTTTTTATGGAAGAGCCAAGCAGAGATACGCTAGAGGAAGGGAC 300
Query 463 GATGAGAAACTCAGCCCTGCTCTCCACCTTGCTTCTGCTGCTGAAGCAGGGGCCTTGGTC 522
||||||||||||||||| | ||| ||||||||||| |||||||||||||||||| |||||
Sbjct 301 GATGAGAAACTCAGCCCCGGTCTTCACCTTGCTTCCGCTGCTGAAGCAGGGGCCCTGGTC 360
Query 523 TGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTT 582
||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 TGTTTATGCACAAATCCGATTTGGCTTGTGAAAACAAGGTTACAGCTCCAGACACCTCTT 420
Query 583 CATCAAACTCAACCATACTCAGGGCTATTAGATGCCTTTAGAACCATAGTGAAAGAGGAA 642
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATCAAACCCAACCATACTCAGGGCTATTAGATGCCTTTAGAACCATAGTGAAAGAGGAA 480
Query 643 GGACCCAGGGCGCTCTACAAGGGTATTGTCCCTGGTCTTGTACTGGTTTCTCATGGTGCT 702
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GGACCCAGGGCGCTCTACAAGGGTATTGTCCCTGGTCTTGTTCTGGTTTCTCATGGTGCT 540
Query 703 ATTCAGTTCACAGCTTATGAGGAACTCCGTAAAATCATTGTGGATTTGAAAGAAAGGAGA 762
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 ATTCAGTTCACAGCATATGAGGAACTCCGTAAAATCATTGTGGATTGGAAAGAAAGGAGA 600
Query 763 AGAAAGTCCGAATCCACTGACAATCTATTGAACTCAGCAGATTATGCTGCACTTGGTGGC 822
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 AGAAAGTCTGAATCCGCTGACAATCTATTGAACTCAGCAGATTATGCTGCACTTGGCGGC 660
Query 823 TCCTCCAAAGTCGCTGCAGTTCTTCTTACGTATCCATTTCAAGTTATACGAGCACGATTA 882
||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 661 TCCTCCAAAGTTGCTGCAGTTCTTCTTACGTATCCATTTCAGGTTATTCGAGCACGATTG 720
Query 883 CAGCAACGACCTAGTACCAACGGAATCCCAAGATATATAGACAGCTTACATGTCATCAGA 942
|||||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 721 CAGCAAAGACCTAGTACTAACGGAATTCCAAGATATATAGACAGCTTCCATGTCATCAGA 780
Query 943 GAAACCGCGAGATATGAAGGTCTCAGGGGTTTCTACAGGGGACTAACGGCTAATCTTTTG 1002
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GAAACTGCGAGATATGAAGGTCTCAGAGGTTTCTACAGGGGACTAACGGCTAATCTTTTG 840
Query 1003 AAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTTCTGAAATTGCTA 1062
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 AAAAATGTACCTGCGTCTTCCATCACATTCATCGTCTATGAAAACGTCCTGAAATTGCTA 900
Query 1063 AAACAGCATCCAACAACAAAAGATTAG 1089
||||||| |||||||| || ||||||
Sbjct 901 AAACAGCCTCCAACAA-AA--GATTAG 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5