BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66400.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496967 jgi|Araly1|496967|fgenesh2_kg.8__2783__AT5G66400.1 824 0.0
> Ahg496967 jgi|Araly1|496967|fgenesh2_kg.8__2783__AT5G66400.1
Length=813
Score = 824 bits (446), Expect = 0.0
Identities = 540/583 (93%), Gaps = 15/583 (3%)
Strand=Plus/Plus
Query 275 AGGGTACGGAACCGGTGGCCAAGGATACGGAACCGGGACCGGGACTGAAGGCTTTGGAAC 334
||| || ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 232 AGGTTATGGAACTGGTGGCCAAGGATACGGCACCGGGACCGGGACTGAAGCCTTTGGAAC 291
Query 335 TGGCGGAGGAGCTAGGCACCACGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 394
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGGCGGAGGAGCTAGGCACCAAGGCCAAGAGCAACTCCACAAGGAAAGTGGTGGTGGCTT 351
Query 395 GGGAGGAATGCTTCACCGCTCCGGATCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 454
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 352 GGGAGGAATGCTTCATCGCTCCGGGTCTGGATCCAGCTCTAGCTCGGAGGATGATGGACA 411
Query 455 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCA 514
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGAGGGAGGAGGAAGAAGGGAATAACACAAAAGATCAAGGAGAAGTTGCCAGGTCATCC 471
Query 515 TGATCAGTC-T--GGTCAAGCTCAAGCGATGGGCGGCATGGGATCCGGATATGATGCTGG 571
||| ||||| | ||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 472 TGACCAGTCGTCTGGTCAAGCTCAAGGGATGAGCGGCATGGGAACCGGATATGATGCTGG 531
Query 572 TGGCTACGGTGGTGAGCACCACGAGAAGAAGGGGATGATGGACAAGATCAAGGAAAAGCT 631
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 532 TGGCTACGGCGGTGAGCGCCAAGAGAAGAAGGGGATGATGGACAAGATCAAGGATAAGCT 591
Query 632 TCCCGGTGGTGGC---CGTTAAGCTTCGAACAATC----GTGTATACATATTAAATAAAA 684
|||||||||||| ||||||||||| ||||| | || |||||||||| |||||||
Sbjct 592 TCCCGGTGGTGGTGGTCGTTAAGCTTCAAACAAACAAACGTCTATACATATTGAATAAAA 651
Query 685 ATAATGAGGGTTTGTAACGCAGTCGCATTCGGTCGTTGTAT-TGTGCTTTTTATGTATGT 743
|||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 652 ATAAGGAGGGTGTGTAACGCAGTCGCATTTGGTCGTTGTATGTGTGCTTTTTATGTATGT 711
Query 744 ACGTCCTGCGATGTGT-GTTG-TTTACT-TACATGAGTGTGTAATGAGCATCTGGCTCTT 800
|||||||||||||||| |||| |||| | |||| ||||||||||||||||||||||||||
Sbjct 712 ACGTCCTGCGATGTGTTGTTGGTTTA-TATACAGGAGTGTGTAATGAGCATCTGGCTCTT 770
Query 801 TTTATGTTCTGAGATGTTTGTGTTATGTAATTTCACATCTATA 843
||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 771 TTTATGTTCTGAGATGTTTGTATTATGTAATTTCATATCTATA 813
Score = 209 bits (113), Expect = 2e-53
Identities = 171/195 (88%), Gaps = 20/195 (10%)
Strand=Plus/Plus
Query 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGttt--t-tt-tAACTAGCT 56
|||||||||||||||||||||||||||||||||||||||||||| | || | | |||||
Sbjct 1 ATCGATCAAACTCATCAAAGTCTAATATCACAAAGAAAGAGTTTAATATTCT-A-TAGCT 58
Query 57 TAGCTCAAAGTGTTTGCTT--------AAG-ACAAGAAGAACATGGCGTCTTACCAGAAC 107
||||||||||||||||||| ||| | |||||||| |||||||||||||||||
Sbjct 59 TAGCTCAAAGTGTTTGCTTAAGAGAAGAAGAAGAAGAAGAAGATGGCGTCTTACCAGAAT 118
Query 108 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAGCAGTATG-ACGA 166
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 119 CGTCCAGGAGGTCAGGCCACTGACGAGTACGGAAACCCGATCCAGCAG---T-TGGACGA 174
Query 167 GTACGGAAATCCGAT 181
||||||||| |||||
Sbjct 175 GTACGGAAACCCGAT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5