BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66410.1
Length=1069
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496965 jgi|Araly1|496965|fgenesh2_kg.8__2781__AT5G66410.1 1336 0.0
Ahg323657 jgi|Araly1|323657|fgenesh1_pm.C_scaffold_5001201 556 9e-158
> Ahg496965 jgi|Araly1|496965|fgenesh2_kg.8__2781__AT5G66410.1
Length=904
Score = 1336 bits (723), Expect = 0.0
Identities = 795/830 (96%), Gaps = 3/830 (0%)
Strand=Plus/Plus
Query 134 AAAGAGATGGATCCGGATACGGTGAAGTCGACCCTCTCGAATCTGGCATTCGGGAATGTA 193
||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 18 AAA-AGATGGATCCGGATGCGGTGAAGTCGACCCTTTCGAATCTGGCATTCGGGAATGTA 76
Query 194 TTGGCGGCAGCTGCTAGAGATTATAAAAAGGAAGTTCTTGCAAATGAAAAGGCACAAGGA 253
||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 77 TTGGCGGCAGCTGCTCGAGATTATAAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGA 136
Query 254 TCAAGACCTGTCAACGAGGAAGTTGATCTTGACGAATTGATGGATGATCCAGAGCTAGAA 313
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 137 TCAAGACCTGTCAACGAGGAAGTTGATCTTGACGATTTGATGGATGATCCAGAGCTAGAG 196
Query 314 AAGTTGCACGCAGATAGGATTGCAGCACTCAGGAGAGAAGTGGAAAAGAGAGAAGCATTC 373
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 197 AAGTTGCACGCAGATAGGATTGCAGCACTCAAGAGAGAAGTGGAAAAGAGAGAAGCTTTC 256
Query 374 AAAAGACAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGCGACTTCTTGGGAGAAGTC 433
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 257 AAAAGGCAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGTGACTTCTTGGGAGAAGTC 316
Query 434 ACAAGGAGTGAAAAAGTTATATGTCACTTCTACCACAAGGAGTTCTATCGCTGCAAGATA 493
||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 317 ACAAGGACTGACAAAGTCATATGTCACTTCTACCACAAGGAATTCTATCGCTGCAAGATT 376
Query 494 ATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGATG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGATG 436
Query 554 GACGCTGAGAACGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCGTGTGTT 613
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 437 GACGCTGAGAATGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCTTGTGTT 496
Query 614 ATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGGTTTCAAGATCTAGGTGCC 673
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 497 ATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGTTTTCAGGATCTAGGTGCC 556
Query 674 AAGGACGATTTCTCCACGACGAAGCTGGAGAATCTTCTGGTCAAGAAAGGAATGCTTAGT 733
||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 557 AAGGACGATTTTTCCACAATGAAGCTGGAGAACCTTCTGGTCAAGAAAGGAATGCTTAGT 616
Query 734 GAAAAGAGAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACGTCGGTCC 793
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GAGAAGAGAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACGTCGGTCC 676
Query 794 GTTAGGTCTTCAGCGAATGTCGACTCTGATTCAGATTGATCTCGAAGCTTTTCTCATAGT 853
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct 677 GTTAGGTCTTCAGCGAATGTCAACTCTGATTCAGATTGATCTCGAAGCTCTTCTCATGGT 736
Query 854 AGACCTCCGAGCCTTTTTGTATTTTGTTTTCACCGCTGCTCTGTTTGAATTGTTTGG-TC 912
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 737 AGATCTCCGAGCCTTTTTGTATTTTGTTTTCACCGCTGCTCTGTTTTATTTGTTTGGGT- 795
Query 913 TATGAATCTTATGCTTCTATAAGTCTTTATAGTGGGAAATTTCGTTCCAC 962
||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 TATGAATCTTATGCTTCTATAAGTCTTTATAGTGGGAAAGTTCGTTCCAC 845
> Ahg323657 jgi|Araly1|323657|fgenesh1_pm.C_scaffold_5001201
Length=669
Score = 556 bits (301), Expect = 9e-158
Identities = 446/516 (86%), Gaps = 10/516 (2%)
Strand=Plus/Plus
Query 195 TGGCGGCAGCTGCTAGAGATTATAAAAAGGAAGTTCTTGCAAATGAAAAGGCACAAGGAT 254
||||||| ||||| ||| ||||| |||||||||||||||| ||||| ||||| |||||||
Sbjct 2 TGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCCAATGAGAAGGCGCAAGGAT 61
Query 255 C-AAGACCTGTCAACGAGGAAGTTGATCTTGACGAA-TTGATGGATGATCCAGAGCTAGA 312
| || ||||| || || || ||||||||||| ||| || ||||||||||||||||||||
Sbjct 62 CGAA-TCCTGTTAATGAAGAGGTTGATCTTGATGAACTT-ATGGATGATCCAGAGCTAGA 119
Query 313 AAAGTTGCACGCAGATAGGATTGCAGCACTCAGGAGAGAAGTGGAAAAGAGAGAAGCATT 372
|| ||||||||||||||||||||||||||| | ||||||||| || ||||||||||| ||
Sbjct 120 AAGGTTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAAGTTGAGAAGAGAGAAGCGTT 179
Query 373 CAAAAGACAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGCGACTTCTTGGGAGAAGT 432
||||||||||||||||||||||| ||||| || |||||||| || |||||||| |||||
Sbjct 180 TAAAAGACAAGGACATGGTGAATATCGAGAGGTAAGCGAAGGAGATTTCTTGGGTGAAGT 239
Query 433 CACAAGGAGTGAAAAAGTTATATGTCACTTCTACCACAAGGAGTTCTATCGCTGCAAGAT 492
||| |||||||| ||||| |||||||| |||||||| ||||| || || || ||||||||
Sbjct 240 CACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGAT 299
Query 493 AATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAA-GA 551
|||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 300 TATGGACAAGCATCTGAAGACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAG- 358
Query 552 TGGACGCTGAGAACGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCGTGTG 611
||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| ||||| || |
Sbjct 359 TGGACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACGTTGCCTTGCG 418
Query 612 TTATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGGTTTCAAGATCTAGGTG 671
|| | ||||| |||||||||||||||||||||||||| || ||||| || ||||| || |
Sbjct 419 TTGTGCTTTTCAGCAAGGGAATCGCGATGGATAGGCTAGTTGGGTTCCAGGATCT-GG-G 476
Query 672 C-C-AAGGACGATTTCTCCACGACGAAGCTGGAGAA 705
| | |||||||||||| |||||| || || |||||
Sbjct 477 CACTAAGGACGATTTCACCACGAATAAACTAGAGAA 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39800325348
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5