BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66440.1
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496962 jgi|Araly1|496962|fgenesh2_kg.8__2778__AT5G66440.1 1074 0.0
> Ahg496962 jgi|Araly1|496962|fgenesh2_kg.8__2778__AT5G66440.1
Length=826
Score = 1074 bits (581), Expect = 0.0
Identities = 751/828 (91%), Gaps = 31/828 (4%)
Strand=Plus/Plus
Query 31 tctctttctctc--tgttcttGCACTCGCAAATCGCAATGGATTCGTTTGATTTCGATAA 88
||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 3 TCTCTCTCTCTCGGTGTTCTTTCACTCGCAAATCGCAATGGATTCGTTTGATATCGATAA 62
Query 89 CGTGAAAGCAGAGAAAGCCAAGGCGTTGCGGCGTTTCAACCGCTTCTGTAGAATTGGCCG 148
||||||||||||||||| |||||||||||||||||||||||| ||| | | || |||||
Sbjct 63 CGTGAAAGCAGAGAAAGTCAAGGCGTTGCGGCGTTTCAACCGTTTCCGGCGGATCGGCCG 122
Query 149 TTTCTTCCGTGCGGCGGAGGTTTGCGTCGCTCTACTCTTCATCTTTTGGACATTTTCGCA 208
||||||||| |||||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 123 TTTCTTCCGAGCGGCGGAGGTTTGCGTCGCGCTCCTCTTCATCTTTTGGACATTAAC-AA 181
Query 209 -ACTTCCTTTCGTCGTTCAAATCTCCGGAGCGTTTCTCCGCCGTATCGCCGCCGTCATAT 267
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 182 GACTTCCTTTGGTCGTTCAAATCTCCGGAGTTTTTCTCCGCCGTATCGCCGCCGTCATCT 241
Query 268 CTACTCCTCTGTTCGTTTTCCTCCTCGGGAACTCCATCGTCGTTGTTCTTCTCACCAAGT 327
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CGACTCCTCTGTTCGTCTTCCTCCTCGGGAACTCCATCGTCGTTGTTCTTCTCACCAAGT 301
Query 328 CTTCCGATCAGACAAC--C-ACCGCCGTCGCAAGCGCAGAAACCGAAATCTACCAGGCGT 384
||||||||| |||||| | ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 302 CTTCCGATCGGACAACAACCACCGCCGCCGCAAGCGCAGAAACAGAAATCTACCAGGCGT 361
Query 385 TCGTCAGATCTGTAGAGAATCGTTCCAAACCGTCCGATGAAGATTTGACGGAGGGGATTG 444
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 362 TCGTCAGATCTGTAGAGAATCGATCCAAGCCGTCCGATGAAGATTTGACGGAGGAGATTG 421
Query 445 TCTACGACGACAAACAGGTGATCGTTACTGATTTGGATTCAAATCCGAATCTAACGGTGG 504
||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 422 TCTACGACGACAAACAGGTGATCGTCACTGATTTGAATTCAAATCCGAATCTAATGGTGG 481
Query 505 ATGAGAATATGCCTCACGTCGAGATTGACTCAGATTCGAGTCCC---CAT--A-GTAAGG 558
|||||||||| ||| ||||||||||||| || |||||||||||| ||| | ||||||
Sbjct 482 ATGAGAATATTCCTGACGTCGAGATTGATTCTGATTCGAGTCCCGATCATCCAAGTAAGG 541
Query 559 TC-T--ATGGAAGAAGCAAATCAGACGTGTCTGGAAAACAGAGTTCA-AA-CA----TG- 608
|| | |||||||||||||||||||||| ||||||||||||||| || || || ||
Sbjct 542 TCGTCTATGGAAGAAGCAAATCAGACGTTTCTGGAAAACAGAGTCCAGAAGCAAAGGTGA 601
Query 609 -G-TGATGATGATGATGAAACGTTCTCTTCAGAGATCGGAGACAGAGAAGTTCTGCAAAG 666
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 602 TGATGATGATGATGATGAAACGTTCTCTTCAGAGATCGGAGACAGAGAAGTGCTGCAGAG 661
Query 667 AAACTGAGAACGATGATGACTCTGAGGAGGAG-A-A-GAACTATCCAGAGGATGATCTGA 723
|||||||||||||||| || |||||||||| | | |||||||||||||||| ||||||
Sbjct 662 AAACTGAGAACGATGAC--CT-TGAGGAGGAGGAGAAGAACTATCCAGAGGATAATCTGA 718
Query 724 GCAACGAAGAGTTTCAGAAAACGATAGAAGCTTTCATAGCAAAACAGAGGATGTTTCGTC 783
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 719 GCAACGAAGAGTTTCAGAAAACGATCGAAGCTTTCATAGCCAAACAGAGGATGTTTCGTC 778
Query 784 GTCAAGAATCTTTAGCCGTCGTTGTCCATAACATAGCCTAAATATCTT 831
||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 779 GTCAAGAATCTTTAGCCGTCGTTGTCCATCACAAACCCTAAATATCTT 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31947004446
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5