BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66450.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918532 jgi|Araly1|918532|Al_scaffold_0008_3283 1014 0.0
> Ahg918532 jgi|Araly1|918532|Al_scaffold_0008_3283
Length=813
Score = 1014 bits (549), Expect = 0.0
Identities = 769/865 (89%), Gaps = 56/865 (6%)
Strand=Plus/Plus
Query 186 ATGGCAGCGTCATCATCTTCTCTTCTTCTTCTCCACAAG-CCCACCTACAATTTCCATTT 244
||||||||||||||||| |||| |||||||||||| || | ||||| ||||||| |||
Sbjct 1 ATGGCAGCGTCATCATC-TCTC--CTTCTTCTCCAC-AGACACACCTGCAATTTCTATTC 56
Query 245 CGCCGCTTCCTCTGTTCCCACTTACATCAATTCCGCTCGATTTCGAATTTCGAGCTCAAT 304
|||||||||||||| | || ||||||||||||||||||||||
Sbjct 57 CGCCGCTTCCTCTG--------T---TC----CCGCTCGATTTCGAATTTCGAG------ 95
Query 305 CTTCCCTTTGGATCgaagaagaagaagaagaaTCTGGTCTGTCTCTGGCT-T--TAAATC 361
|||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 96 ---CCCTTTGGATCGGAGAAGAAGAAGAAGAATCTGGTCTGCCTCTGGCTCTACTAAATC 152
Query 362 TATGGCCGATTTGGTTAAAACCAATGCTCGCAGAGACGGTGAAGATCGATTCCAAGCGCT 421
|||||||||||| || ||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 153 TATGGCCGATTTAGTCAAAACCAATGCTCGCAGAGACGGTGAAGAACGATTTCAGGCGCT 212
Query 422 CGAGCAAGAGGCTTTCATCAGTAATTCGTCGTCGGAGCTCCAGAACGAGTTGGTATCCGA 481
||||||||||||||| |||| |||||||||||| | | || || |||
Sbjct 213 CGAGCAAGAGGCTTTTATCAATAATTCGTCGTC---G-----G-AC-----GG----CGA 254
Query 482 CGCCGGCGATGGTATTGAAGCAATCGCTAATCGTCTGAGCAAATGGATTGTAGCAGCTCT 541
| | | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 255 ---C-G-G-TGGTATTGAAGCAATCGCTAATCGTCTGAGCAAATGGATTGTAGCTGCTCT 308
Query 542 GTTTGGATCCGTTCTGCTTCTACGACATGATGGTGCAGCTTTGTGGGCTGTGATTGGATC 601
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 309 ATTTGGATCCGTTCTGCTTCTACGACATGATGGTGCAGCTTTGTGGGCTGTCATTGGATC 368
Query 602 GGTTTCAAATTCCGTGCTCTCAGTAGCTTTGAAACGTATACTTAACCAAGAGAGACCTGT 661
||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 CGTTTCAAATTCTGCGCTCTCAGTAGCTTTGAAACGTTTACTTAACCAAGAGAGACCTGT 428
Query 662 TGCTACTCTCCGTTCTGATCCTGGGATGCCTTCTTCTCATGCCCAATCCATTTCTTTCAT 721
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 TGCTACGCTGCGTTCTGATCCTGGGATGCCATCTTCTCATGCCCAATCCATTTCTTTCAT 488
Query 722 CTCTGTGTTTTCTGTCTTCTCCGTTATGGAGTGGCTTGGAACCAATGTACTCTCTCTGTT 781
|||| | |||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 489 CTCTCTCTTTTCTCTCTTCTCCGTTATGGAGTGGCTTGGAACCAATGTGCTCTCTCTGCT 548
Query 782 CCTTAGCGGCTTCATCCTCGCATTGGGTTCTTATTTCACGTGGTTAAGGGTTTCTCAGAA 841
|||||||||| ||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 549 CCTTAGCGGCCTCATCCTCGCACTGGGTTCTTATTTTACATGGTTAAGGGTTTCTCAGAA 608
Query 842 GCTTCACACGACAAGTCAAGTGGTCGTAGGTGCAATCGTGGGTTCTGTTTACTCCACCTT 901
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 GCTTCACACTACAAGTCAAGTTGTCGTAGGTGCAATCGTGGGTTCTGTTTACTCCACCTT 668
Query 902 ATGGTATGTAACTTGGAACTCTCTTGTTCTTGAAGCCTTTACCTCAACATTCTCAGTACA 961
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 669 ATGGTATGTAACTTGGAACTCACTTGTTCTTGAAGCCTTTACCTCATCATTCTCAGTACA 728
Query 962 AATAGCTCTCTTTCTGGTTGCTGCTGCGTCTGCTTTAGGTTTTGCAGTTTATGTGCTACT 1021
||||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 729 AATAGCTGTCTTTCTGGTCGCCGCTGCGTCTGCTTTAGGTTTTGCAGTATATGTGCTACT 788
Query 1022 TAACTGGTTTAAAGATGACAGATGA 1046
|||||||||||||||||||||||||
Sbjct 789 TAACTGGTTTAAAGATGACAGATGA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5