BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66460.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281 2078 0.0
> Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281
Length=1296
Score = 2078 bits (1125), Expect = 0.0
Identities = 1240/1297 (96%), Gaps = 2/1297 (0%)
Strand=Plus/Plus
Query 200 atgaagCTTCTG-GCTCTGTTTCCATTTCTAGCGATCGTGATCCAACTCAGCTGTTGGGA 258
|||||||||||| | | |||||| |||||||||||||||||||||||| ||||| |||||
Sbjct 1 ATGAAGCTTCTGTG-TTTGTTTCTATTTCTAGCGATCGTGATCCAACTAAGCTGCTGGGA 59
Query 259 GCTAGGAACAGATGCATTACCGAGCGGTGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 318
||||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 60 GCTAGGAGCAGATGCGTTATCGAGCAATGGGTTCGTGAGGACGAAAGGTGTTCAGTTTAG 119
Query 319 TCTCAATGGCTATCCATATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTAGC 378
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TCTCAATGGCTACCCTTATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTTGC 179
Query 379 CTCCGATCCATCCCAACGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 438
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTGATCCATCCCAAAGGTCTAAGATCTCCACCGCTTTCCAAGATGCTTCTCGCCATGG 239
Query 439 ATTGACCGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 498
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATTAACTGTTGCTCGAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATTC 299
Query 499 CCCTGGCTCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGTTAGCTGAGGCAAG 558
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 TCCTGGATCCTACAACGAGGATATGTTTCAGGGTTTGGATTTTGCGATAGCTGAGGCAAG 359
Query 559 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGGCATGGTATAAAGATAATACTCAGCTTTGCCAATAACTACGAGAGCTTCGGAGGGAG 419
Query 619 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTTTCTTCTGAAGACGACTT 678
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 GAAGCAATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTCTCTTCTGAAGACGACTT 479
Query 679 CTTCACTGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCAAGGCTGTGCTGAACAG 738
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 480 CTTCACAGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCATGGCTGTGCTGAACAG 539
Query 739 ATTCAATACCTTTACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 798
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCAATACCTTCACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCT 599
Query 799 CATGAACGAGCCCCGTTGCCCCTCTGATCCTTCCGGAAGAGCCATTCAGGCTTGGATTAC 858
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 600 CATGAACGAGCCCCGTTGCCCCTCAGATCCTTCCGGAAGAACCATTCAGGCTTGGATTAC 659
Query 859 TGAAATGGCTGCTCATGTGAAATCACTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 918
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 660 TGAAATGACTGCTCATGTGAAATCGCTAGACAGAAACCATCTGCTTGAAGCTGGCCTCGA 719
Query 919 AGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTTAACCCACCTGGCCAGTTTGG 978
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GGGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGACTCTAAACCCACCTGGCCAGTTTGG 779
Query 979 AACCGATTTCATCGCCAATAACCGCATTCCCGGCATTGATTTCGTCACGGTTCACTCTTA 1038
||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 780 AACCGATTTTATCGCCAATAACCGCATCCCCAGCATTGATTTCGTTACGGTTCACTCTTA 839
Query 1039 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCCTGATGAATGGTTTCCAGACTCAAGCGAGCAATCCCAAATGGATTTCTTGAACAAATG 899
Query 1099 GCTAGACGCACACATCCAAGACGCACAGAACGTTCTTCACAAACCAATAATATTAGCAGA 1158
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 GCTCGACGCACATATCCAAGACGCACAGAACGTTCTTCACAAACCCATAATATTAGCAGA 959
Query 1159 GTTTGGTAAATCAATGAAGAAACCAGGTTATACCCCAGCGCAGAGAGACATCGTCTTCAA 1218
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 960 GTTTGGCAAATCAATGAAGAAACCAGGTTATACCCCAGCACAGAGAGACATTGTCTTCAA 1019
Query 1219 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGAGGTGCAGCAGCAGGAGGATT 1278
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1020 CACCGTGTACAGCAAGATTTACGGGTCTGCAAAACGAGGTGGTGCAGCAGCAGGAGGATT 1079
Query 1279 GTTCTGGCAACTTCTGGTAAACGGAATTGATAATTTTCAAGATGGGTATGGGATCATACT 1338
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 GTTCTGGCAACTTCTGGTAAATGGAATTGATAATTTTCAAGATGGCTATGGGATCATACT 1139
Query 1339 TAGCCAAAGCTCGTCGACCGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1398
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAGCCAAAGCTCGTCCACGGTTAACGTCATTTCACAGCAATCGCGGAAGTTGACTTTGAT 1199
Query 1399 TAGGAAAATCTTCGCTAGGATGATCAATGTGGAGAAATGGAAGAGAGCGAGAGGTCAGGG 1458
| |||||||||| || |||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 1200 TCGGAAAATCTTTGCGAGGATGATCAATGTGGAGAAATGGAAGAGAGCAAGAGGCCGGGG 1259
Query 1459 ACAAGTTGGGAAACGAGGTCACAAAATCAATAACTGA 1495
|||||| | |||||||||||||| ||||| ||||||
Sbjct 1260 ACAAGTAAGAAAACGAGGTCACAACATCAAAAACTGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5