BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66470.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496959 jgi|Araly1|496959|fgenesh2_kg.8__2775__AT5G66470.1 2604 0.0
> Ahg496959 jgi|Araly1|496959|fgenesh2_kg.8__2775__AT5G66470.1
Length=1605
Score = 2604 bits (1410), Expect = 0.0
Identities = 1547/1612 (96%), Gaps = 14/1612 (1%)
Strand=Plus/Plus
Query 12 AAAACCAACCAGTGAGAGCTATCAATTTGAAAAACCAAGTCCAACAATGGCGGTCTCTCC 71
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 AAAACCAACCAGTGAGAGCTATCAATTTGAAAAACCAAGTCCGACAATGGCGGTCTCTCC 60
Query 72 GCATATTTCGCCTACTCTTTCCCGCTACAAATTCTTCTCTACTTCCGTTGTTGAAAACCC 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATATTTCGCCTACTCTTTCCCGCTACAAATTCTTCTCTACTTCCGTTGTTGAAAACCC 120
Query 132 TAATTTCTCTCCGTATCGTATCTATAGTCGGCGGAGAGTTACCAAATCACATCTCCAGGC 191
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TAATTTCTCTCCGTATCGTATCTATAGTCGGCGGAGAGTTACCAAATCGCATCTCCAGGC 180
Query 192 GCACAACAGTACCACTAGCTATGGCCGGACGGAACTCTCCTCCTCGAAGAAGCTATGGAT 251
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCACAACACTACCACTAGCTATGGCCGGACGGAACTCTCCTCCTCGAAGAAGCTATGGAT 240
Query 252 TAGGCAACGAAGCTT-CAGCGAAATGGAGGTTGAGCAAGCACAATTAGAAGATGATGAAG 310
|||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 241 TAGGCAACGAAG-TTCCAGCGAAATGGAGGTTGAGCAAGCACAATTAGAGGAAGATGAAG 299
Query 311 AACAAGTGGAGATCGATATCGTCGACGAAGCCAGTCTTCTCTCCCTGAGCATGAAACCGG 370
|||||| ||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 300 AACAAGAGGAGATCGATATCGTTGACGAGGCCAGTCTCCTTTCCCTGAGCATGAAACCGG 359
Query 371 ACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTAATA 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 360 ACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTGATA 419
Query 431 CTCATCATCGGAGCGGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGC 490
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CTCATCATCGCAGCGGATACGTGGCGGTGGTGGGGATGCCCAACGTTGGGAAAAGCACGC 479
Query 491 TTTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGA 550
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCTCGAACCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGA 539
Query 551 GGCATCGGATTCTTGGTATTTGTTCTAGCCCTGAATATCAGATGATACTTTATGATACGC 610
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 GGCATCGGATTCTTGGTATATGTTCTAGCCCTGAATATCAGATGATACTTTATGACACGC 599
Query 611 CTGGTGTAATTGAGAAGAAGATGCACAGGTTAGATACAATGATGATGAAGAATGTCAGAG 670
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTGGTGTAATCGAGAAGAAGATGCACAGGTTAGATACAATGATGATGAAGAATGTCAGAG 659
Query 671 ATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTA 730
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 660 ATGCTGCCATCAATGCGGATTGCGTAGTTATTCTTGTTGATGCTTGTAAAACGCCTACTA 719
Query 731 ATATAGAAGAAGTTTTGAAAGAGGGTTTGGGAGACCTTGAGAAAAAGCCACCCATGTTGC 790
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 720 ATATAGAAGAAGTTTTGAAAGAGGGTTTGGGAGACCTCGAAAAAAAGCCACCCATGTTGC 779
Query 791 TTGTTATGAATAAGAAAGATCTGATCAAACCTGGTGAGATTGCCAAGAAACTGGAGTGGT 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTGTTATGAATAAGAAAGATCTGATCAAACCTGGTGAGATTGCCAAGAAACTGGAGTGGT 839
Query 851 ATGAAAAATTTACGGATGTTGATGAAGTTATACCTGTAAGTGCAAAGTATGGACATGGAA 910
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATGAAAAATTCACAGATGTTGATGAAGTTATACCTGTAAGTGCAAAGTATGGACATGGAA 899
Query 911 TAGAGGATGTCAAAGAGTGGATATTATCCAAACTTCCCTTCGGGCCACCTTATTATCCAA 970
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 900 TAGAGGATGTCAAAGAGTGGATATTATCTAAACTTCCCTTCGGGCCACCATATTATCCAA 959
Query 971 AGGATATTGTGAGCGAGCATCCAGAGAGATTTTTTGTTTCTGAGATTGTTAGAGAGAAAA 1030
||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 960 AGGATATTGTGAGCGAGCACCCAGAGAGATTCTTTGTTTCTGAGATTGTCAGAGAGAAGA 1019
Query 1031 TATTTATGCAGTACCGAAATGAAGTTCCTTATGCATGTCAGGTGAACGTGCTGAGCTACA 1090
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1020 TATTTATGCAGTACCGAAATGAAGTTCCATATGCATGTCAGGTGAACGTGCTGAGCTATA 1079
Query 1091 AAACTAGACCAGCTGCAAAAGATTTTATTCAAGTGGAAGTAGTAGTGGATAAAAATTCTC 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAACTAGACCAGCTGCAAAAGATTTTATTCAAGTGGAAGTAGTAGTGGATAAAAATTCTC 1139
Query 1151 AGAAGATCATCCTTATAGGAAAAGAAGGAAAGGCTCTGAAAACACTAGCAACGGCTGCTC 1210
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1140 AGAAGATCATCCTTATAGGAAAGGAAGGAAAGGCTCTGAAAACACTAGCGACGGCTGCTC 1199
Query 1211 GGCTCGACATTGAAGATTTCCTTCAGAAGAAAGTCTTCCTCGAGGTGGAAGTGAAAGTGA 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGCTCGACATTGAAGATTTCCTTCAGAAGAAAGTCTTCCTCGAGGTGGAAGTGAAAGTGA 1259
Query 1271 AAGAGAACTGGAGACAAGACGAGGGGCTTCTCAAGTACTACGGCTATGGAGGACAGATCC 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGAGAACTGGAGACAAGACGAGGGGCTTCTCAAGTACTACGGCTATGGAGGACAGATCC 1319
Query 1331 GAGCTATGTAGTATGTGGGCTTCAAATGGGCCTTGAAGAAGATGAGAAAGTGCAAATGAC 1390
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 GAGCTATGTAGTATGTGGGCTTCAAATGGGCCTAGAAGAAGATGAGAAAGTGCAAATGAC 1379
Query 1391 TCGGCGGCTCAGGTTAGCTTTTTC-CC-TTCtttttt-tttGTATTTAGCCGATGCCACT 1447
||||| |||||||||| ||||| || || |||||| ||||||| || |||||||||||
Sbjct 1380 TCGGC---TCAGGTTAGCATTTTCACCCTTATTTTTTGTTTGTATCTAACCGATGCCACT 1436
Query 1448 CA-GTCTAGCTTTTGTT-TTTAAT-CTCAATCAGTTGATTCCTTTGGAAATTTGAACTCT 1504
|| | |||||||||||| |||| | ||||||| | |||||||||| |||||||||||||
Sbjct 1437 CACG-CTAGCTTTTGTTGTTTA-TGCTCAATCCGACGATTCCTTTGAAAATTTGAACTCT 1494
Query 1505 TTCTTCTTTTGTTTTGTCCTTAAGAGTTTGTTCAACCAACCCCACTGAATATCTCATTCC 1564
||||||||||||||||| ||| |||| ||||||||| ||||||||||||||| || |||
Sbjct 1495 TTCTTCTTTTGTTTTGTACTTTAGAGATTGTTCAACTAACCCCACTGAATATATCGTTC- 1553
Query 1565 ATGATCACAGGTAGTAGACTTATAATTAAACAATTGCATTTAAATTTGCTTT 1616
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1554 ATGATCACAGGTAGTAAACTTATAATTAAACAATTGCATTTAAATTTGCTTT 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5