BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66480.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332918 jgi|Araly1|332918|fgenesh1_pm.C_scaffold_8002261 1836 0.0
> Ahg332918 jgi|Araly1|332918|fgenesh1_pm.C_scaffold_8002261
Length=1320
Score = 1836 bits (994), Expect = 0.0
Identities = 1229/1340 (92%), Gaps = 25/1340 (2%)
Strand=Plus/Plus
Query 172 ATGCCTACATTTTCTGCTGCCGCTTTGGGTAGATCACTAAATTCAGGGACGTCCTTATCT 231
|||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||
Sbjct 1 ATGCCTACATTTTCTGCTGCCGCTTTGGATAGATCACTAAATTCAGGGGCTTCCGTATCT 60
Query 232 AGTAAATTTCCAAGCACACTGCAGTCAAAGCCGTCTATTTTGAATGATGAAAGTAAGCAA 291
|| |||||||||||||| |||| |||||||| |||| |||||| |||||||||||||||
Sbjct 61 CGTGAATTTCCAAGCACATTGCATTCAAAGCCATCTACTTTGAACGATGAAAGTAAGCAA 120
Query 292 CCTAAAGAAAAGACATTCACTCGTCCTCAGATGTCACCTTCTCTATATGCCACTACTAAA 351
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 CCTAAAGAAAAGACATTCACTCGTCCTCAGATGTCACCTTCTCTATACGCCACTCCTAAA 180
Query 352 GAAATCCCTCATCCCAATTCGCCTTCTTCCTACCCTCCATCTCCCTATATCATCAATCAC 411
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 181 GAAATCCCTCGTCCCAATTCGCCATCTTCCTATCCTCCATCTCCCTATATCATCAATCAC 240
Query 412 AAAGCTCGTGGGCCTGTTCTTTTCAATAGGGACTCTGAGGTGGATGGGCCTTCTCACCCG 471
||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCACGTGGACCAGTTCTTTTCAAAAGGGACTCTGAGGTGGATGGGCCTTCTCACCCG 300
Query 472 ATAA--CCTCTGGTGAGGAAAAGATTAGTGGTAATGTAGATGTGGAGGCTACTGCCTCCT 529
| || ||| |||||||||||||||| ||||||||||||||||||| |||||| |||| |
Sbjct 301 A-AAGCCCT-TGGTGAGGAAAAGATTCGTGGTAATGTAGATGTGGACGCTACTACCTCTT 358
Query 530 TGAGCAAGTCCACATCCCTATCATTTCCTATCACCGAGGCTATTGCGGTGGATCACACCA 589
|||| |||||||||||||||||||||||||| | | | || || ||| | ||
Sbjct 359 TGAGGAAGTCCACATCCCTATCATTTCCTAT---C-A-G----TGAGG-CGAT---AGCA 405
Query 590 ATGGTGTTCACACCCAAGGCATCCATGAACGTCCTGTTTGGGATTGCAGTCCCCCTCTTG 649
| | | |||||||||||| |||| |||||||||||||||||||||||| ||||||| ||
Sbjct 406 GT-G-GATCACACCCAAGGTATCCCTGAACGTCCTGTTTGGGATTGCAGCCCCCCTCATG 463
Query 650 GGACATTTTTGAACGAGAAGTCGGGAAGAGATATCAGCAATGGTGGGATTGGAAGTAATA 709
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 464 GGACATTTTTGAACGAGAACTCGGGAAGAGATATCAGCAACGGTGGGATTGGAAGCAATA 523
Query 710 ATGCTACCAGTAATTTAGAATGGCAAAGTTACTTATTGGAGCCGGTAAGAATAAAAGCAG 769
|||| ||| || |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 524 TTGCTGCCAATACTTTAGAATGGAAAAGTTATTTATTGGAGCCGGTAAGAATAAAAGCAG 583
Query 770 ACAAGGAGCTTGAGCCTGAAAATTTCTATAACCCAGGTGAATTAGTAAGCTTCACAAGTA 829
|||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 584 ACAAGGAGCTTGAGTCTGAAAATTTCTATAACCCAGGTGTATCAGTAAGCTTCACTAGTA 643
Query 830 ACACAGAGGTAGAAGAT-TTCGAGAGAGCTGAAAGCTCACAC-AGTCTTGCTACACATGT 887
|||||||||||||||| || ||| ||||||||||||||||| | | || || |||||||
Sbjct 644 GCACAGAGGTAGAAGATATTGGAG-GAGCTGAAAGCTCACACAAAT-TTTCTTCACATGT 701
Query 888 TGGAGAGTTTTATGATGCTTGCGATGAACTATCAACTGACAGTGGAATGCAGAGTTCAGC 947
|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 702 TGGAGACTTTTATGATGCTTGCGATGAACTATCCACCGACAGTGGAATGCAGAGTTCAG- 760
Query 948 T-AACAACATTGAATCTGAGGTAAGGGAGATGAGATTGGGTTTACTAATGGAAATCGAAA 1006
| |||| | ||||||||||| | |||||||| || ||||||||||||||||||||||| |
Sbjct 761 TCAACATCCTTGAATCTGAGCTGAGGGAGATAAGGTTGGGTTTACTAATGGAAATCGAGA 820
Query 1007 GGAGGAGGCAGGCAGAGGCGACTCTAGAGCAAATGCAAGTTCATTGGCGGAGGCTCCGTG 1066
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GGAGAAGGCAGGCAGAGGAGACTCTAGAGCAAATGCAAGTTCATTGGCGGAGGCTCCGTG 880
Query 1067 ACCAGTTGGCCGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGAAGCCAATACAGCA 1126
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 881 ACCAGTTGGCCGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGCAGCCAATACAGCA 940
Query 1127 TGAACCTAGCTGATGAGCTACGTTGTCAACTTGAGGTCACCAGGTTTGTCTCCGACACAC 1186
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 941 TGAACCTAGCTGATGAGATACGTTGTCAACTTGAGGTCACCAGGTTTGTCTCTGACTCAC 1000
Query 1187 TAGGCAGTGACTTGGCCAAGACAGAGGTAGAGATGGAGATGGAAGCTGAGCTCGAAGCTA 1246
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TAGGCAGTGACTTGGCCAAGGCAGAGGTAGAGATGGAGATGGAAGCTGAGCTCGAAGCTA 1060
Query 1247 AGAACTTTGAAATCACCCGGTTGTCTGACCGTCTTCATTATTACGAGACTGTGAACCAGG 1306
|||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1061 AGAACTTTGAAATCACACGGTTGTCTGACCGTCTTCACTATTATGAGACGGTGAACCAGG 1120
Query 1307 AAATGTCCCAGCGCAACCAAGAGGCCATAGAGGTGGCAAGGCGAGACGGGCAAAAGAGAA 1366
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 1121 AAATGTCCCAGCGCAACCAAGAGGCTATAGAGGTGGCAAGGCGCGACGGGCAAAAGAAAA 1180
Query 1367 AGAGGAGGCAGAGGTGGATTTGGGGATCAATAGCTGCAACCATCACACTCGGGAGTGGAG 1426
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1181 AGAGGAGGCAGAGGTGGATTTGGGGATCAATTGCTGCAACCATCACGCTCGGGAGTGGAG 1240
Query 1427 TCTTGGCCTGGTCGTACCTTCCTCCCGGAATGTTATCATCAGATGAAGCTCAACCTCAGC 1486
||||||| |||||||||||||| || ||||| |||||||| ||||| ||||||| |||||
Sbjct 1241 TCTTGGCTTGGTCGTACCTTCCACCTGGAATTTTATCATCGGATGAGGCTCAACATCAGC 1300
Query 1487 TGTCTCCAAAAGATTCATAA 1506
|||||||||||||||||||
Sbjct 1301 CGTCTCCAAAAGATTCATAA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5