BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66490.1

Length=542
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496957 jgi|Araly1|496957|fgenesh2_kg.8__2773__AT5G66490.1         651    0.0  


> Ahg496957 jgi|Araly1|496957|fgenesh2_kg.8__2773__AT5G66490.1
Length=439

 Score =  651 bits (352),  Expect = 0.0
 Identities = 413/441 (94%), Gaps = 9/441 (2%)
 Strand=Plus/Plus

Query  1    AAAACCACAAGA-AATAATGATTAGAGCGCTGAGCACGAGGAAGGTTCGAGGCAGCTACA  59
            |||||||||||| ||  ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  1    AAAACCACAAGACAA-GATGATTAGAGCCCTGAGCACGAGGAAGGTTCGAGGAAGCTACA  59

Query  60   AGAAGCTCGGCGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG  119
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   AGAAGCTGGGTGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG  119

Query  120  TTCCTACAAATCCCCATGGTCAATCCCCGAAGGTGAATAAACCGGTGGAGAAAACCAGGG  179
            |||||||||||  ||||||||||||||||||||||||||||| ||||||||||||  |||
Sbjct  120  TTCCTACAAATATCCATGGTCAATCCCCGAAGGTGAATAAACTGGTGGAGAAAACGGGGG  179

Query  180  GTTCGGCTCACCCTCTATTTAGTTTCTTCGAAATGAGTCTAAAGA-G--gaagaag---a  233
            |||||| |||||||||| ||||||||||||| ||||||||||||| |  |||||||   |
Sbjct  180  GTTCGGTTCACCCTCTACTTAGTTTCTTCGATATGAGTCTAAAGAGGAAGAAGAAGACAA  239

Query  234  agaagaagaGCACGACGACTGCAAAACCAGAATTCGCTAGGTACTTGGAGTATGTCAAGG  293
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  240  AGAAGAAGAGCACGACGACTGCAAAACCAGAATTTGCTAGGTACTTGGAGTATGTCAAGG  299

Query  294  AAGGAGGTGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG  353
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  AAGGAGGCGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG  359

Query  354  AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGATTTGTGATATACCTTTCTATTT  413
            ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||
Sbjct  360  AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGGTTTGTTATATAACTT-CTATTT  418

Query  414  GAATAAGAAGGATGAATACAT  434
            ||||||||| |||||||||||
Sbjct  419  GAATAAGAAAGATGAATACAT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19764595102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5