BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66490.1 Length=542 Score E Sequences producing significant alignments: (Bits) Value Ahg496957 jgi|Araly1|496957|fgenesh2_kg.8__2773__AT5G66490.1 651 0.0 > Ahg496957 jgi|Araly1|496957|fgenesh2_kg.8__2773__AT5G66490.1 Length=439 Score = 651 bits (352), Expect = 0.0 Identities = 413/441 (94%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 1 AAAACCACAAGA-AATAATGATTAGAGCGCTGAGCACGAGGAAGGTTCGAGGCAGCTACA 59 |||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1 AAAACCACAAGACAA-GATGATTAGAGCCCTGAGCACGAGGAAGGTTCGAGGAAGCTACA 59 Query 60 AGAAGCTCGGCGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG 119 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 AGAAGCTGGGTGACGAAGAAGAAGCAGGCGCAGGGCTTTTAGAAGTGAAACCGGAGAGCG 119 Query 120 TTCCTACAAATCCCCATGGTCAATCCCCGAAGGTGAATAAACCGGTGGAGAAAACCAGGG 179 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 120 TTCCTACAAATATCCATGGTCAATCCCCGAAGGTGAATAAACTGGTGGAGAAAACGGGGG 179 Query 180 GTTCGGCTCACCCTCTATTTAGTTTCTTCGAAATGAGTCTAAAGA-G--gaagaag---a 233 |||||| |||||||||| ||||||||||||| ||||||||||||| | ||||||| | Sbjct 180 GTTCGGTTCACCCTCTACTTAGTTTCTTCGATATGAGTCTAAAGAGGAAGAAGAAGACAA 239 Query 234 agaagaagaGCACGACGACTGCAAAACCAGAATTCGCTAGGTACTTGGAGTATGTCAAGG 293 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 240 AGAAGAAGAGCACGACGACTGCAAAACCAGAATTTGCTAGGTACTTGGAGTATGTCAAGG 299 Query 294 AAGGAGGTGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG 353 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AAGGAGGCGTTTGGGATAACACTTCAAATGGACCTGCCATATATTACAGATAGATCGGAG 359 Query 354 AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGATTTGTGATATACCTTTCTATTT 413 ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| Sbjct 360 AAAGAGATTTCACAGAGGTTGTTTATATTTATTTTCGGTTTGTTATATAACTT-CTATTT 418 Query 414 GAATAAGAAGGATGAATACAT 434 ||||||||| ||||||||||| Sbjct 419 GAATAAGAAAGATGAATACAT 439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19764595102 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5