BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66500.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496956 jgi|Araly1|496956|fgenesh2_kg.8__2772__AT5G66500.1 2617 0.0
> Ahg496956 jgi|Araly1|496956|fgenesh2_kg.8__2772__AT5G66500.1
Length=1682
Score = 2617 bits (1417), Expect = 0.0
Identities = 1596/1684 (95%), Gaps = 5/1684 (0%)
Strand=Plus/Plus
Query 2 ACATGTTCGCATGTTTGCGTATTGGACGCTTTATTCGTCTGGGTAACGTTACCGTTAAAT 61
|||||||||||||||||| ||||||| ||||||||||||||||| |||| | || ||||
Sbjct 1 ACATGTTCGCATGTTTGCCTATTGGAGGCTTTATTCGTCTGGGTGACGTCATCGGGAAAT 60
Query 62 CCACTAATTTGGTACTGAGGTGTGTCTTTATCCGAAATTTTGCCACCCATGCCGACCACC 121
||||||||||||||||||| | ||| |||||||| ||||||| ||||||||||||||||
Sbjct 61 CCACTAATTTGGTACTGAGATATGTGTTTATCCGTAATTTTGTTACCCATGCCGACCACC 120
Query 122 TGTTCGACGAATTGCCGCAACGAGACCTCTCCTCACTTAACTCTCAACTCTCGTCTCACC 181
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 121 TGTTCGACGAATTGCCGCAACGAGACCTCTCCTCACTGAACTCTCAACTCTCGTCTTACC 180
Query 182 TCCGCAGTGGAAACCCAAATGACACCTTGGCTCTCTTTCTTCAGATTCATAGGGCTAGCC 241
|||| || ||||||||||||| ||| |||||||| |||||| |||| ||| |||| ||||
Sbjct 181 TCCGGAGCGGAAACCCAAATGGCACATTGGCTCTTTTTCTTGAGATGCATCGGGCCAGCC 240
Query 242 CTGATCTCAGCTCGCACACTTTCACTCCGGTTCTCGGGGCCTGTTCCCTCTTGTCGTACC 301
|||| |||||||||||||| |||||||||||||| || || ||| |||||||||||||||
Sbjct 241 CTGACCTCAGCTCGCACACCTTCACTCCGGTTCTAGGCGCGTGTGCCCTCTTGTCGTACC 300
Query 302 CAGAAACAGGACGCCAAGTTCACGCCTTGATGATCAAACAAGGCGCTGAAACAGGAACCA 361
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 CAGAAACAGGACGCCAAGTTCACGCCTTGATGATCAAACAAGGCGCTGAGACAGGAACCA 360
Query 362 TATCCAAAACTGCGCTTATTGACATGTACTCCAAGTACGGACACTTGGTTGATTCCGTTA 421
||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TATCCAAAACTGCACTTATTAACATGTACTCTAAGTACGGACACTTGGTTGATTCCGTTA 420
Query 422 GGGTATTCGAAAGCGTTGAGGAAAAAGATCTCGTCTCATGGAATGCTCTGCTTTCGGGTT 481
|||| ||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GGGTGTTCGAGAGCGTTGAAGAAAAAGATGTCGTCTCATGGAATGCTCTGCTTTCGGGTT 480
Query 482 TCCTTAGAAACGGTAAAGGCAAAGAAGCTCTTGGCGTTTTCGCAGCTATGTATAGAGAAA 541
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TCCTTAGAAATGGTAAAGGCAAAGAAGCTCTTGGCGTTTTCGCAGCTATGTGTAGAGAAA 540
Query 542 GAGTAGAAATCAGTGAGTTCACTTTGTCTTCTGTTGTTAAAACTTGTGCCTCTCTCAAGA 601
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 GAGTAGAAATCAGTGAGTTCACTTTGTCTTCTGTTGTTAAAACCTGTGCCTCTCTCAAGA 600
Query 602 TTTTGCAGCAAGGGAAGCAAGTTCATGCCATGGTGGTGGTCACCGGACGCGATCTCGTGG 661
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 601 TTTTGCAGCAAGGGAAGCAAGTTCATGCCATGGTGATGGTCACGGGACGCGATCTCGTGG 660
Query 662 TTTTAGGAACTGCAATGATTAGTTTTTACTCGAGTGTAGGTTTGATCAATGAAGCCATGA 721
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 661 TTTTAGGAACTGCAATGATTAGTTTTTACTCGAGTGTAGGGTTGATTAGTGAAGCCATGA 720
Query 722 AGGTTTATAACAGTTTGAATGTTCATACGGACGAGGTGATGTTGAATTCTTTGATATCAG 781
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 AGGTTTATATCAGTTTGAATGTTCATACAGACGAGGTGATGTTGAATTCTTTGATATCAG 780
Query 782 GTTGCATTCGAAACCGAAATTACAAGGAAGCGTTTCTGCTTATGAGTAGGCAGAGACCCA 841
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GTTGCATTCGAAACCGAAATTACAAGGAAGCGTTTCTGCTTATGAGTAGGAAGAGACCCA 840
Query 842 ATGTGAGAGTGCTCAGTAGCTCTCTTGCTGGCTGCTCTGATAACTCTGATCTGTGGATTG 901
|||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 841 ATGTGAGAGTTCTCAGTAGCTGTCTTGCTGGCTGCTCTGATAACTCTGATATGTGGATTG 900
Query 902 GTAAACAGATACACTGTGTCGCTTTACGTAATGGTTTCGTTTCAGAT-TCTAAGCTATGC 960
|||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||
Sbjct 901 GTAAACAGATACACTGTGTCGCCTTACGTAATGGTTTCGTTTCAGATAT-TAAGTTATGC 959
Query 961 AATGGCTTAATGGATATGTATGGAAAATGCGGTCAGATTGTGCAAGCGCGTACTATTTTC 1020
|||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct 960 AATGGCTTAATGGATATGTACGGCAAATGCGGTCAGATTGTGCAAGCGCGTACTCTTTTC 1019
Query 1021 AGAGCTATTCCATCTAAAAGTGTGGTTTCTTGGACGAGTATGATAGATGCGTATGCGGTT 1080
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 AGAGCTATTTCATCTAAAAGTGTGGTTTCTTGGACGAGTATGATAGATGCGTATGCAGTT 1079
Query 1081 AATGGGGATGGGGTTAAAGCTCTTGAAATCTTCAGGGAAATGTGTGAAGAAGGAAGCGGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AATGGGGATGGGGTTAAAGCTCTTGAAATCTTCAGGGAAATGTGTGAAGAAGGAAGCGGA 1139
Query 1141 GTTTTACCGAATTCAGTGACATTTCTTGTTGTTATATCGGCTTGTGCACACGCAGGACTA 1200
|||||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 1140 GTTTTACCCAATTCAGTGACATTTCTCGTTGTTTTATCGGCTTGTGCACATGCAGGACTA 1199
Query 1201 GTTAAAGAAGGTAAGGAATGTTTTGGTATGATGAAGGAGAAGTATCGGTTGGTTCCTGGA 1260
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTGAAGAAGGTAAGGAATGTTTTGGTATGATGAAGGAGAAGTATCGGTTGGTTCCTGGA 1259
Query 1261 ACAGAGCATTACGTATGCTTCATCGATATCTTAAGCAAGGCTGGTGAGACAGAAGAGATA 1320
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1260 ACAGAGCATTACGTATGCTTCATTGATATCTTAAGTAAGGCTGGTGATACAGAAGAGATA 1319
Query 1321 TGGAGATTAGTCGAGAGAATGATGGAGAACGATAATC-AAAGCATTCCTTGTGCTATATG 1379
||||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||||
Sbjct 1320 TGGAGATTAGTTGAGAGAATGATGGAGAACAATAAACGAAA-CATTCCTTGTGCTATATG 1378
Query 1380 GGTAGCGGTACTCAGTGCTTGTAGTCTTAATATGGATCTTACGCGAGGCGAATATGTAGC 1439
|||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1379 GGTAGCTGTACTTAGTGCTTGTAGTCTTAATATGGATGTTACGCGAGGCGAATATGTAGC 1438
Query 1440 AAGGAGGCTTATGGAAGAGACGGGTCCAGAGAACGCGAGCATTTATGTGTTGGTTTCGAA 1499
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AAGGAAGCTTATGGAAGAGACGGGTCCAGAGAACGCGAGCATTTATGTGTTGGTTTCGAA 1498
Query 1500 TTTCTATGCAGCGATGGGGAAGTGGGATGTCGTTGAAGAATTGAGAGGAAAACTGAAGAA 1559
|||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1499 TTTCTATGCAGCTATTGGGAAGTGGGATGTGGTTGAAGAATTGAGAGGAAAATTGAAGAA 1558
Query 1560 TAAAGGTTTGGTTAAAACAGCAGGACACAGCTTATTCATATGAATTGCTTTGTTTTTTCA 1619
|||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1559 TAAAGGTTTGGTTAAAGCAGCAGGACACAGCTTATTAATATGAATTACTTTGTTTTTTCA 1618
Query 1620 GCATTACACTACACTTGAGCTACTGTTTTT-GTGTCAAGAAACAGAGCAAGTCCACTAAA 1678
|||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1619 GCATTACACTACACTTAAGCTACTGTTTTTTGTGACAAGAAACAGAGCAAGTCCACTAAA 1678
Query 1679 GTCT 1682
||||
Sbjct 1679 GTCT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5