BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66510.2
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496955 jgi|Araly1|496955|fgenesh2_kg.8__2771__AT5G66510.2 1781 0.0
Ahg312889 jgi|Araly1|312889|fgenesh1_pm.C_scaffold_1001669 209 3e-53
Ahg947302 jgi|Araly1|947302|scaffold_703531.1 198 7e-50
Ahg943458 jgi|Araly1|943458|scaffold_604002.1 198 7e-50
Ahg926734 jgi|Araly1|926734|scaffold_202295.1 198 7e-50
Ahg888540 jgi|Araly1|888540|Al_scaffold_0007_526 165 7e-40
Ahg951589 jgi|Araly1|951589|scaffold_803476.1 137 2e-31
> Ahg496955 jgi|Araly1|496955|fgenesh2_kg.8__2771__AT5G66510.2
Length=1133
Score = 1781 bits (964), Expect = 0.0
Identities = 1061/1108 (96%), Gaps = 6/1108 (1%)
Strand=Plus/Plus
Query 1 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 60
Query 61 TGATAAAACGCAAATCGATCTCTCGTGTGGAAGAAGAAGAAGAACACGATGGGAACAATG 120
||| |||||| ||||||||| |||||| || |||||||| ||| |||||||||||||||
Sbjct 61 TGACAAAACGTAAATCGATCCCTCGTG-GG--GAAGAAGACGAAGACGATGGGAACAATG 117
Query 121 GGTAAAGCATTCTACAGCGTAGGATTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGG 180
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 118 GGTAAAGCATTCTACAACGTAGGATTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGG 177
Query 181 CTCGGTTGTCGCCTCCAAGGGAAAAATCATTTCCGAGAACAGCTATCAAGGCACCGCACA 240
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 178 CTCGGTTGTCGCCTCCAAGGCAAAAATCACTTCCGAGAACAGCTATCAAGGCACCGCACG 237
Query 241 CTCATGAATGTTTTTGACAAAACCCCTAATGTGGATAAGGGGGCTTTTGTGGCTCCTAAC 300
||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||
Sbjct 238 CTCATGAATGTTTTTGACAAAGCCCCTAGTGTGGATAAGGGGGCTTTTGTTGCTCCTAAC 297
Query 301 GCTTCTCTCTCTGGTGATGTCCATGTGGGAAGAGGTTCTTCCATTTGGTATGGATGTGTC 360
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 298 GCTTCTATCACTGGTGATGTCCATGTGGGACGAGGTTCTTCCATTTGGTATGGATGTGTC 357
Query 361 TTGAGAGACATACCCTTTGATTTAATGACCGACTCTGCAGGAGATGCTAACAGCATTAGT 420
||||||||||| ||| ||||||||| | ||||||||||||||||||||||||||| |
Sbjct 358 TTGAGAGACATTCCCATTGATTTAACAATTTACTCTGCAGGAGATGCTAACAGCATTACT 417
Query 421 GTTGGAGCTGGGACCAATATTCAGGACAACGCTCTTGTCCACGTTGCTAAGACCAACTTA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 GTTGGAGCTGGGACCAATATTCAGGACAACGCTCTTGTCCACGTTGCCAAGACCAACTTA 477
Query 481 AGTGGGAAGGTCTTACCTACTGTCATTGGAGACAATGTCACCATTGGTCATAGTGCTGTT 540
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 AGCGGGAAGGTCTTACCTACTGTCATTGGAGACAATGTCACTATTGGTCATAGTGCTGTT 537
Query 541 TTACATGGCTGCACTGTCGAGGATGAGGCCTATATTGGTACAAGTGCAACTGTCTTGGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 TTACATGGCTGCACTGTCGAGGATGAGGCCTATATTGGTACAAGTGCAACTGTGTTGGAT 597
Query 601 GGAGCTCATGTTGAAAAACATGCCATGGTTGCTTCAGGAGCTCTTGTTAGGCAGAACACT 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GGGGCTCATGTTGAAAAACATGCCATGGTTGCTTCAGGAGCTCTTGTTAGGCAGAACACT 657
Query 661 AGAATTCCCTCTGGCGAGGTTTGGGGAGGCAACCCAGCTAAATTTCTGAGGAAGGTGACA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAATTCCCTCTGGCGAGGTTTGGGGAGGCAACCCAGCTAAATTTCTGAGGAAGGTGACA 717
Query 721 GAAGAAGAAAGAGTCTTCTTCTCCAGTTCGGCTGTGGAGTACTCCAACTTAGCTCAAGCT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 718 GAAGAAGAAAGAGTCTTCTTCTCCAGTTCGGCTGTGGAGTACTCCAACTTAGCTCAAGTT 777
Query 781 CACGCCACAGAGAACGCAAAGAACTTGGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CACGCCACAGAGAACGCAAAGAACTTGGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAG 837
Query 841 AAGAACGCTCGCGATACAGAATATGATTCAGTACTCGATGATCTCACGCTCCCTGAGAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGAACGCTCGCGATACAGAATATGATTCAGTACTCGATGATCTCACGCTCCCTGAGAAT 897
Query 901 GTACCAAAAGCAGCTTGAGGCGTTTAACCTGTGCCGCCTTGCGAATCTTGATTTGTTTGG 960
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 898 GTACCAAAAGCAGCTTGAGGCGTTTAACCTGTGCCGTCTTATGAATCTTGATTTGTTTGG 957
Query 961 ATTTGAAA-AGTAAAAACAA-A-GAACTTGATTTCCTGCTTCTCCAATAAAGTTTTCTTG 1017
|||||||| | ||||| || | |||||| |||||||||||||||||||| |||||||||
Sbjct 958 ATTTGAAAGAAAAAAAAAAACAAGAACTTCATTTCCTGCTTCTCCAATAATGTTTTCTTG 1017
Query 1018 GGCGTAAAATCCATTGGCCAGTGCTCACTGGGAAAGTTTTCGGCTTAAAGGCATTCATTT 1077
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1018 GGCTTAAAATCCATTGGCCAGTGCTTACTGGGAAAGTTTTCGGCTTAAAGGCATTCATTT 1077
Query 1078 CTCTGTTAAAGATTGTGAGGGGTTTTGT 1105
|||||||||||||||||||||| |||||
Sbjct 1078 CTCTGTTAAAGATTGTGAGGGGGTTTGT 1105
Score = 56.5 bits (30), Expect = 4e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1158 GTCTAATAAATTGTTGATCAGACAGACATT 1187
||||||||||||||||||||||||||||||
Sbjct 1104 GTCTAATAAATTGTTGATCAGACAGACATT 1133
> Ahg312889 jgi|Araly1|312889|fgenesh1_pm.C_scaffold_1001669
Length=900
Score = 209 bits (113), Expect = 3e-53
Identities = 351/464 (76%), Gaps = 24/464 (5%)
Strand=Plus/Plus
Query 399 AGGAGATGCT-AACAGCATTAGTGTTGGAG-CTGGGACCAATATTCAGGACAACGCTCTT 456
||| |||| | |||| | | |||||||| | | || || ||||||||||||||| | |||
Sbjct 330 AGGGGATG-TGAACACCGTAAGTGTTGG-GTCAGGCACTAATATTCAGGACAACTCACTT 387
Query 457 GTCCACGTTGCTAAGA-CCAACTTAAGTGGGAAGGTCTTA-CCTACTGTCATTGGAGACA 514
|| || || || || | | |||||||| ||||| || | || || ||||||||||||
Sbjct 388 GTGCATGTGGC-AAAATCAAACTTAAGCGGGAAAGT-GCACCCAACCATCATTGGAGACA 445
Query 515 ATGTCACCATTGGTCATAGTGCTGTTTTACATGGCTGCACTGTCGAGGATGAGGCCTATA 574
|||| ||||||||||||||||||||||||||||| || |||||||||||||| ||| ||
Sbjct 446 ATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTCGAGGATGAAACCTTTA 505
Query 575 TTGGTACAAGTGC-A-ACTGTCTTGGATGGAGCTCATG-TTGAAAAACATGCCATGGTTG 631
| || | |||| | ||| ||||| | || ||| || ||||||| |||| |||||||
Sbjct 506 TCGGGATGGGTGCGACACT-TCTTG-ACGGGGCTG-TGGTTGAAAAGCATGGGATGGTTG 562
Query 632 CTTCAGGAGCTCTTGTTAGG-CAGAACACTAGAATTCCCTCTGGCGAGGTTTGGGGAGGC 690
|| | || || ||||| | | || || || |||||||| ||||| ||||| ||||||||
Sbjct 563 CTGCTGGTGCGCTTGT-ACGACAAAATACCAGAATTCCTTCTGGAGAGGTATGGGGAGGA 621
Query 691 AACCCAGCTAAATTTC-TGAGGAAGGTGACAGAAGAAGAAAGAGTCTTCT-TCTC-CAGT 747
|||||||| || ||| | |||||| | || || || |||| | ||| | |||| ||||
Sbjct 622 AACCCAGC-AAGGTTCCTTAGGAAGCTAACTGATGAGGAAATTG-CTTTTATCTCTCAGT 679
Query 748 TCGGCTGTGGAGTACTCCAACTTAGCTCAAGCTCACGCCACAGAGAACGCAAAGA-ACTT 806
| || | ||||| ||| | || || |||||||| ||||||| |||||| | ||
Sbjct 680 -CAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGCAAAGCCA-TT 737
Query 807 GGACGAGGCTGAGTTCAAGAAGCTTCTAAACAAGAAGAACGCTC 850
| | | ||||||| ||||| ||||| ||||||| | ||||
Sbjct 738 AAATGCGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTC 781
> Ahg947302 jgi|Araly1|947302|scaffold_703531.1
Length=203
Score = 198 bits (107), Expect = 7e-50
Identities = 127/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 85 GTGTGGAAGAAGAAGAAGAACACGATGGGAACAATGGGTAAAGCATTCTACAGCGTAGGA 144
||| |||||||||||||||| ||||||||||||||| | |||||||| |||| |||||||
Sbjct 1 GTGGGGAAGAAGAAGAAGAAGACGATGGGAACAATGAGAAAAGCATTGTACAACGTAGGA 60
Query 145 TTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGGAAA 204
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGCAAA 120
Query 205 AATCATTTCCGAGAACA 221
|| || |||||||||||
Sbjct 121 AAACACTTCCGAGAACA 137
> Ahg943458 jgi|Araly1|943458|scaffold_604002.1
Length=203
Score = 198 bits (107), Expect = 7e-50
Identities = 127/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 85 GTGTGGAAGAAGAAGAAGAACACGATGGGAACAATGGGTAAAGCATTCTACAGCGTAGGA 144
||| |||||||||||||||| ||||||||||||||| | |||||||| |||| |||||||
Sbjct 1 GTGGGGAAGAAGAAGAAGAAGACGATGGGAACAATGAGAAAAGCATTGTACAACGTAGGA 60
Query 145 TTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGGAAA 204
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGCAAA 120
Query 205 AATCATTTCCGAGAACA 221
|| || |||||||||||
Sbjct 121 AAACACTTCCGAGAACA 137
> Ahg926734 jgi|Araly1|926734|scaffold_202295.1
Length=203
Score = 198 bits (107), Expect = 7e-50
Identities = 127/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 85 GTGTGGAAGAAGAAGAAGAACACGATGGGAACAATGGGTAAAGCATTCTACAGCGTAGGA 144
||| |||||||||||||||| ||||||||||||||| | |||||||| |||| |||||||
Sbjct 1 GTGGGGAAGAAGAAGAAGAAGACGATGGGAACAATGAGAAAAGCATTGTACAACGTAGGA 60
Query 145 TTCTGGATCCGTGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGGAAA 204
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TTCTGGATCCGGGAAACTGGTCAAGCACTTGATCGGCTCGGTTGTCGCCTCCAAGGCAAA 120
Query 205 AATCATTTCCGAGAACA 221
|| || |||||||||||
Sbjct 121 AAACACTTCCGAGAACA 137
> Ahg888540 jgi|Araly1|888540|Al_scaffold_0007_526
Length=156
Score = 165 bits (89), Expect = 7e-40
Identities = 105/113 (93%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 109 ATGGGAACAATGGGTAAAGCATTCTACAGCGTAGGATTCTGGATCCGTGAAACTGGTCAA 168
|||||||||||| | |||||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGAACAATGAGAAAAGCATTGTACAACGTAGGATTCTGGATCCGGGAAACTGGTCAA 60
Query 169 GCACTTGATCGGCTCGGTTGTCGCCTCCAAGGGAAAAATCATTTCCGAGAACA 221
|||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 61 GCACTTGATCGGCTCGGTTGTCGCCTCCAAGGCAAAAAACACTTCCGAGAACA 113
> Ahg951589 jgi|Araly1|951589|scaffold_803476.1
Length=1992
Score = 137 bits (74), Expect = 2e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 1 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CAAAGACTGCACTCTCTCCTCTTCCTCTGGCTCCGGCGAAAAACCCCTTTTCGATTTCAT 21
Query 61 TGATAAAACGCAAATCGATC 80
||| |||||| |||||||||
Sbjct 20 TGACAAAACGTAAATCGATC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5