BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66540.1
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496951 jgi|Araly1|496951|fgenesh2_kg.8__2767__AT5G66540.1 2543 0.0
> Ahg496951 jgi|Araly1|496951|fgenesh2_kg.8__2767__AT5G66540.1
Length=1873
Score = 2543 bits (1377), Expect = 0.0
Identities = 1683/1826 (92%), Gaps = 40/1826 (2%)
Strand=Plus/Plus
Query 111 TCAATCAATGGCTACGGTAAAGGATTCGGGGTTTGAAGCCCTTGAGAAGCTTAAGGCAAC 170
|||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 75 TCAATCCATGGCGACGGTTAAGGATTCGGGCATTGAAGCCCTTGAGAAGCTTAAGTCAAC 134
Query 171 AGAGCCACCAGTTTTTCTAGCGCCAAGTTCAATATCTGAGGATGCTCGCTCTGCATCTCA 230
||| ||||||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 135 AGAACCACCAGTTTTCCTAGCGCCAAGTTCAATATCTGAGGTTGCTCGCGCTGTATCTCA 194
Query 231 GTATCTATTCATGAAGTTGAAGCCGCATAACCCTAAATGTCCATTTGATCAGCTCT--CT 288
|||||| |||| |||||||||||||||| ||||||||| || | |||||||||||| |
Sbjct 195 GTATCTGTTCACGAAGTTGAAGCCGCATGACCCTAAATCTCAACTTGATCAGCTCTGGGT 254
Query 289 TCTGATGGGTTTGATGCGGAGCAGATTTGGCAGCAAATTGATATGCAATCTCAACCTTTG 348
| | |||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 255 T-T-ATGGTTTTGATACGGAGCAGATTTGGCAGCAAATTGATATGCAGTCTCAACATTTG 312
Query 349 TTGACTAGCTTGCGGCAGGAAGTCAAGAGATTTGCTAAAAACCCTGAAGAGATTCGTAAA 408
||| | ||||||||||||||||| || ||||||| |||||||||||||||||||||||||
Sbjct 313 TTGCCAAGCTTGCGGCAGGAAGTTAACAGATTTGTTAAAAACCCTGAAGAGATTCGTAAA 372
Query 409 CTTGG-GAAGTTGGCCCTTAAGGTTTCTCatgaagatgatattgatgagatggatatgga 467
| ||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 373 C-TGGCGAATTTGTCCCTTAAGGTTTCTCATGAAGATGATGTTGATGAGATGGATATGGA 431
Query 468 tggttttgactcggatgatgttgatgatgaggatAAAGAGATAGAATCTAATGACAGCga 527
||||| |||||||||||| | ||| | || ||| ||||| ||| ||| ||| |
Sbjct 432 TGGTTCTGACTCGGATGA----G--GAT-A--AT---GAGCTAGAAGCTAGTGAAAGCCA 479
Query 528 aggagaagatgaagaggaagaggaagaggacgaggaagaagaagaggaggaagaggagga 587
||||||||| |||||||| || ||||| || |||||||||||||| || ||||| |||||
Sbjct 480 AGGAGAAGAGGAAGAGGATGATGAAGAAGAGGAGGAAGAAGAAGAAGATGAAGAAGAGGA 539
Query 588 gg-aggaggaggaga--aggatggagacaatgaaggaatagaggaTAAGTTCTTCAAGAT 644
|| || || || ||| | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GGAAGAAGAAGAAGATGACGATGGAGACAATGAAGGAATAGAGGACAAGTTCTTCAAGAT 599
Query 645 AAAAGAATTGGAGGAATTTTTAGAGGAAGGTGAAGCAGAAGAGTATGGG-ATAGACCACa 703
||||||||||| |||||||||||||||||||||||| ||||||||||| || ||| |||
Sbjct 600 TAAAGAATTGGAAGAATTTTTAGAGGAAGGTGAAGCACAAGAGTATGGGAAT-GACTACA 658
Query 704 aaaacaaaaaaGGAGTGGCACagagaaagaagcaaaatttgagcgatgatgaagacgaag 763
|||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct 659 AAAACAAAAAAGGAGTGGCAAAGAGAAATAAGCAAAATTTTAGCGATGATGAAGACGAAG 718
Query 764 aagatgatgatgatgaagaagaagatgTTGAGTTTGATGCTTTTGCTGGTGGTGACGACG 823
|||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 719 AAGATGATGAGGATGAAGACGAAGATGATGAGTTTGATGCTTTTGCTGGTGGTGACGACG 778
Query 824 AAGAGACAGATAAATTAGGAAAAGCAAGGTATGATGATTTCTTTGGTGGC--AAA-AAGG 880
||||| |||||||||| |||| ||||||||||||||||||||||||||| ||| ||||
Sbjct 779 AAGAGGCAGATAAATTGGGAAGGGCAAGGTATGATGATTTCTTTGGTGGCAAAAAGAAGG 838
Query 881 AGACAAAAATGAAGTTGAAAGATTTGAGTGAAGATGAGGAAGCTGAAATAGAAAA-CAAA 939
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 839 AGACAAAAATGAAGTTGAAAGATTTGAGTGAAGATGAGGAAGCTGAAAGAGAAAATC-AA 897
Query 940 GGCAATGAAAAACTCTCTACCCATGAGAGAGCACGACTAAAGCTTCAATCCAAGATTGAA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGCAATGAAAAACTCTCTACCCATGAGAGAGCACGACTAAAGCTTCAATCCAAGATTGAA 957
Query 1000 CAGATGGAGAAAGCAAACTTGGACCCAAAACATTGGACAATGCAGGGAGAGATAACTGCG 1059
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 958 CAGATGGAGAAAGCTAACTTAGACCCAAAACATTGGACAATGCAGGGAGAGATAACTGCT 1017
Query 1060 GCAAAGAGGCCAATGAATAGTGCTCTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGG 1119
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCAAAGAGGCCAATGAACAGTGCTCTAGAAGTTGATTTAGATTTTGAGCACAATGCCAGG 1077
Query 1120 CCTGCTCCTGTAATCACAGAAGAAGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGA 1179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCTGCTCCTGTAATCACAGAAGAGGTCACAGCCTCACTTGAAGATTTGATCAAGAGCAGA 1137
Query 1180 ATCATTGAGGCTCGTTTCGATGATGTTCAACGAGCACCTCGTCTACCCACTAAAGGAAAA 1239
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1138 ATCATTGAGGCTCGTTTCGATGATGTTCAGCGAGCACCTAGTCTACCCACTAAAGGAAAA 1197
Query 1240 AGAGAAGCCAAGGAATTGGACGAAAGCAAAAGCAAGAAAGGTCTTGCCGAAGTTTACGAG 1299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 AGAGAAGCCAAGGAATTGGACGATAGCAAAAGCAAGAAAGGTCTTGCCGAAGTTTACGAG 1257
Query 1300 GCAGAATACTTTCAGAAGGCTAATCCAGCTTTTGCCCCAACAACTCACTCTGATGAACTA 1359
||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1258 GCAGAATACGTTCAGAAGGCTAATCCAGCTTTTGCCCCAATAACTTTGTCTGATGAACTA 1317
Query 1360 AAGAAAGAGGCAAGCATGTTGTTCAAGAAACTATGCCTGAAGTTGGATGCTCTCTCCCAC 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGAAAGAGGCAAGCATGTTGTTCAAGAAACTATGCCTGAAGTTGGATGCTCTCTCCCAC 1377
Query 1420 TTCCACTTCACACCTAAACCAGTGATTGAAGAAATGTCTATACCAAACGTTTCAGCCATA 1479
|||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 1378 TTCCACTTCACACCTAAACCAGTGATTGAAGAGATGTCTATACAAAACGTTCCAGCCATA 1437
Query 1480 GCAATGGAAGAGGTTGCGCCCGTGGCCGTCTCAGATGCAGCAATGCTTGCCCCAGAGGAA 1539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1438 GCAATGGAAGAGGTTGCGCCCGTGGCAGTCTCAGATGCAGCAATGCTTGCCCCAGAGGAA 1497
Query 1540 ATATTTTCCGGGAAAGGTGACATTAAGGATGAGTCTGAGCTCACACAGGAAGATAGAAAG 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1498 ATATTTTCCGGGAAAGGTGACATTAAGGATGAGTCTGAGCTCACACAGGAAGAAAGAAAG 1557
Query 1600 AGGAGGAGAGCGAATAAGAAGAGAAAGTTTAAGGCTGAATCTGCAAATGAACCG-CCTAA 1658
|| |||||||| || ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1558 AGAAGGAGAGCTAAGAAGAAGAGAAAGTTTAAGGCTGAATCTGCAAATGAACCGGCC-AA 1616
Query 1659 AAAGGCGCTGGATACAAGTACCAAGAACCCTTAAACTGTTACATGTTGAAGAAAGGAGAG 1718
|||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1617 AAAGGCGCGGGATACAAGTACCGAGAACCCTTGAACTGTTACATGATGAAGAAAGGAGAG 1676
Query 1719 AGTTACAGAGGCAAATTCAAGATGATAAGATCTCGGTCAAGAGCATTGCTACACAGACAG 1778
|||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 1677 AGTTACAGAGCCAAATTGAAGATGATAAGATCTCAGTCAAGAGCATTGCTACACAT---G 1733
Query 1779 CTTGAAGATTAGATAAAACAACAGTTTTGAATGAGAGAAATATTTAAACTTTGTCTTTCA 1838
|||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| |
Sbjct 1734 CTTGAAGATTAGATCAAACCACAGTTTTGGATTAGAGAAATATTTAAACTTTGTCTTTGA 1793
Query 1839 CAAATTTGAATTTTATTGTAtttttttCTCTTTG-TATGAGTAGTTCCATTTTCCTTGTA 1897
||||||||||||||||||||| || |||| |||||| ||||||||||||||||||
Sbjct 1794 CAAATTTGAATTTTATTGTATA-----CT-TTTGATATGAGAAGTTCCATTTTCCTTGTA 1847
Query 1898 TCGATAGAAAAATTCCAAAGAAATCT 1923
| |||||| ||||||| |||||||||
Sbjct 1848 TGGATAGAGAAATTCCCAAGAAATCT 1873
Score = 89.8 bits (48), Expect = 7e-17
Identities = 70/79 (89%), Gaps = 7/79 (9%)
Strand=Plus/Plus
Query 1 CCTCTTCTAAAACCTAACCGCCGTTTAAACC-ACCTTCG--G-CACCGCCATTGATATA- 55
||||||||||||||||||||||||||||||| ||||||| | |||||||| ||||| |
Sbjct 1 CCTCTTCTAAAACCTAACCGCCGTTTAAACCCACCTTCGTCGTCACCGCCACTGATA-AG 59
Query 56 CTCTACTGTTTTCGT-CAA 73
|||| |||||||||| |||
Sbjct 60 CTCTTCTGTTTTCGTTCAA 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72676187460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5