BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66550.1
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951586 jgi|Araly1|951586|scaffold_803473.1 1035 0.0
Ahg932702 jgi|Araly1|932702|scaffold_400690.1 839 0.0
> Ahg951586 jgi|Araly1|951586|scaffold_803473.1
Length=686
Score = 1035 bits (560), Expect = 0.0
Identities = 639/677 (94%), Gaps = 6/677 (1%)
Strand=Plus/Plus
Query 35 GCTTAGAGCACAACACCACGATGACGACCAAGGCCATGGAGAGAGGATTTAAGCTGATTC 94
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCTTAGAGCGCAACACCAAGATGACGACCAAGGCTATGGAGAGAGGATTTAAGCTGATTC 60
Query 95 TGGGTTCTCAATCCATGGCGAGAAAGAGGATTTTGGCTGAAATGGGATATGATTACACTA 154
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TGGGTTCTCAGTCGATGGCGAGAAAGAGGATTCTGGCTGAAATGGGATATGATTACACTA 120
Query 155 TCGTGACTGCAGACATTGATGAGAAAGCTATTAGGACAGAGAAGCCTGAAGATTTGGTTG 214
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TCGTGACTGCAGACATTGATGAGAAAGCCATTAGGACAGAGAAGCCTGAAGATTTGGTTG 180
Query 215 TGGCTCTTGCTGAAGCCAAGGCAAATGAGATTATATCGAAATTGGGAGGTGAGAGCCAGT 274
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 181 TGGCTCTTGCTGAAGCCAAGGCAAATGAGATTATATCGAAATTGGGTGGTGAAAGCCAGT 240
Query 275 TTGCAAAAGATCCTCAACCAACTCTTTTGATTACTGCAGACACTGTTGTTGTGTACAAAG 334
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TTGCACAAGATCCTCAACCGACTCTGTTGATTACTGCAGACACTGTTGTTGTGTACAAAG 300
Query 335 GTGTTATTAGAGAAAAACCAACCACTAAAGAAGAAGCTCGTGAATTTATCAAAGGCTATT 394
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 GTGTCATTAGAGAAAAACCAACCAGTAAAGAAGAAGCTCGTGAATTTATCAAAGGCTATT 360
Query 395 CCGGTTCACACGGAGGAGTTGTGGGATCTGTTCTTGTTAGAAACTTGAAAACTGGAGTTA 454
|||| ||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 361 CCGGGTCACACGGAGGCGTTGTGGGATCTGTTCTTGTAAGGAACTTGAAAACTGGAGTTA 420
Query 455 AAAAAGGAGGATGGGACAAAGCTGAGGTTTATTTCCATGAGATACCAGAACAAGTCATTG 514
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
Sbjct 421 GAAGAGGAGGATGGGACAAAGCAGAGGTTTATTTCCATGAGATACCAGAACAAATCATCG 480
Query 515 ACGGTCTTATTGATGATGCAATAACTTATAAGGTTGCTGGAGGTTTAACACTGGAGCATC 574
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 481 ACGATCTTATTGATGATGCAATAACGTATAAGGTTGCTGGAGGTTTAACCCTGGAGCATC 540
Query 575 CCCTCATTTCACCCTTTATCGATTCTGTGGTGGGAGGGGTTGATACAGTCATGGGACTTC 634
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 541 CCCTCATTTCACCCTTTATCGATTCTGTGGTGGGAGGAGTTGATACAGTGATGGGACTTC 600
Query 635 CTAAAGAACTCACAGAAAAATTCATAAACGATGTGTTGT-T-GTA-G--CTCAAGTCCCT 689
||||||||||||||||||||||||| ||||||||||| | | | | | |||||| ||||
Sbjct 601 CTAAAGAACTCACAGAAAAATTCATCAACGATGTGTTATGTAGGAAGAACTCAAGCCCCT 660
Query 690 TTTTGATTATGTAGGAA 706
||| |||||||||||||
Sbjct 661 TTT-GATTATGTAGGAA 676
> Ahg932702 jgi|Araly1|932702|scaffold_400690.1
Length=661
Score = 839 bits (454), Expect = 0.0
Identities = 574/632 (91%), Gaps = 8/632 (1%)
Strand=Plus/Plus
Query 70 ATGGAGAGAGGATTTAAGCTGATTCTGGGTTCTCAATCCATGGCGAGAAAG-AGGATTTT 128
||||||| |||||||||||||||||| |||||||| || |||||||||| | | |||| |
Sbjct 36 ATGGAGAAAGGATTTAAGCTGATTCTTGGTTCTCAGTCGATGGCGAGAACGCA-GATTCT 94
Query 129 GGCTGAAATGGGATATGATTACACTATCGTGACTGCAGACATTGATGAGAAAGCTATTAG 188
|||||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct 95 GGCTGAAATGGGCTATGATTTCACTATTGTGACTGCAGATATTGATGAGAAAGCTATTAG 154
Query 189 GACAGAGAAGCCTGAAGATTTGGTTGTGGCTCTTGCTGAAGCCAAGGCAAATGAGATTAT 248
|| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 155 GAAAGAGAAGCCTGAAGATTTGGTTGTGGCTATTGCTGAAGCCAAAGCAAATGAGATTAT 214
Query 249 ATCGAAATTGGGAGGTGAGAGCCAGTTTGCAAAAGATCCTCAACCAACTCTTTTGATTAC 308
|| ||||||||||||||| || ||||||||| ||||| ||||||||||||| ||||||||
Sbjct 215 ATTGAAATTGGGAGGTGAAAGTCAGTTTGCACAAGATTCTCAACCAACTCTATTGATTAC 274
Query 309 TGCAGACACTGTTGTTGTGTACAAAGGTGTTATTAGAGAAAAACCAACCACTAAAGAAGA 368
| |||||||||||||||||||||||||||| || |||||||||||||||| |||||||||
Sbjct 275 TTCAGACACTGTTGTTGTGTACAAAGGTGTCATCAGAGAAAAACCAACCAGTAAAGAAGA 334
Query 369 AGCTCGTGAATTTATCAAAGGCTATTCCGGTTCACACGGAGGAGTTGTGGGATCTGTTCT 428
|||||| || |||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 335 AGCTCGCGAGTTTATCAAAGGCTATTCCGGGTCACATGGGGGCGTTGTGGGATCTGTTCT 394
Query 429 TGTTAGAAACTTGAAAACTGGAGTTAAAAAAGGAGGATGGGACAAAGCTGAGGTTTATTT 488
||| |||||||||||||||||||||| || || ||||||||||||||| |||||||||||
Sbjct 395 TGTGAGAAACTTGAAAACTGGAGTTAGAAGAGTAGGATGGGACAAAGCAGAGGTTTATTT 454
Query 489 CCATGAGATACCAGAACAAGTCATTGACGGTCTTATTGATGATGCAATAACTTAT-AAGG 547
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||| | ||||
Sbjct 455 CCATGAGATACCAGAACATGTCATCGACGATCTTATTGATGATGCAATAACTT-TCAAGG 513
Query 548 TTGCTGGAGGTTTAACACTGGAGCATCCCCTCATTTCACCCTTTATCGATTCTGTGGTGG 607
||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 514 TTGCTGGAGGTTTAATGCTTGAGCATCCCCTCATTTCACCTTTTATCGATTCCGTGGTGG 573
Query 608 GAGGGGTTGATACAGTCATGGGACTTCCTAAAGAACTCACAGAAAAATTCATAAACGATG 667
|||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct 574 GAGGTGTTGATACAGTCATGGGGCTTTCTAAAGAACTCACTGAAAAATTCATTAACGATG 633
Query 668 TGTTGTTGTAGCTCAAGTCCCTTTTTGATTAT 699
| || | |||||||||| |||||||||||
Sbjct 634 T-TT-T-GTAGCTCAAGAGG-TTTTTGATTAT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31298914857
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5