BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66560.1
Length=2378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496949 jgi|Araly1|496949|fgenesh2_kg.8__2765__AT5G66560.1 2242 0.0
Ahg903809 jgi|Araly1|903809|Al_scaffold_0003_937 1123 0.0
Ahg916833 jgi|Araly1|916833|Al_scaffold_0008_1584 1081 0.0
Ahg913391 jgi|Araly1|913391|Al_scaffold_0001_3645 643 0.0
> Ahg496949 jgi|Araly1|496949|fgenesh2_kg.8__2765__AT5G66560.1
Length=2071
Score = 2242 bits (1214), Expect = 0.0
Identities = 1485/1609 (92%), Gaps = 46/1609 (3%)
Strand=Plus/Plus
Query 30 TCTCTTTCTTATGATTTAGGATTCCAATTCCTTCCCTTTCCCCTTCTTGTTCTCTCCATA 89
||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 18 TCTGTTTCTCATGATCTAGGATTCCAATTCCTTCCCCTTCCCCTTCTTGTTCTCTCCATA 77
Query 90 TTCTCCTCTTTAGAAAGAGATAGAGAGAGTCTTGtttttttCCTGTC-TTGAGT--GATA 146
| | || |||||||||||| || | | |||||||||| ||||| || | ||
Sbjct 78 -T-T-ATCATTAGAAAGAGAT--AG-G-CTATTGTTTTTTT-CTGTCTTTTTTTCAGAGC 129
Query 147 tttttttCAGAGCCCTGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTACCTCCAA 206
||| ||| | | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 130 CTTTCTTC--A---CAGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTAGCTCCAA 184
Query 207 GGGCCAAGCATGGTTTTGTACGACTGGGTTACCTAGTGACATTGAAATCGAAGTTGATGA 266
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |
Sbjct 185 GGGCCAAGCATGGTTTTGTACAACTGGCTTACCTAGCGACATTGAAATCGAAGTTGATCA 244
Query 267 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 304
Query 327 GATTACAGAGCAAGAGACTAGATCTTCCTCTTCCATGGCGCTGATAACTGTAATAGACCC 386
|||||||||||||||||||||||| | | |||||||||||| ||||||| || |||||
Sbjct 305 GATTACAGAGCAAGAGACTAGATC-T--TGTTCCATGGCGCTAATAACTGAAACGGACCC 361
Query 387 AAAAGTAGAAGAGACTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGAT--A-AAGA 443
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 362 AAAAGTAGAAGAGAGTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGATGAAGAAAA 421
Query 444 AGAAGAAGAAGT-G--GAAGAGCAGGAGATCGAAGAAAATGGTTATCCTCACATCAAACT 500
|||||||||||| | |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 422 AGAAGAAGAAGTAGACGAAGAGCAAGAGATCGAAGAAAATGGCTATCCTCACATAAAACT 481
Query 501 CGAGGATTTTCCCGGTAGTTCAGAGAGCTTTGAGATGGTGGCGAAGTTCTGCTACGGCGT 560
|||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 482 CGAGGACTTCCCCGGAAGTTCAGAGAGCTTTGAGATGGTGGCCAAGTTCTGCTACGGCGT 541
Query 561 CAAGATGGACCTCTCTGCTTCCACCGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 620
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 542 CAAGATGGACCTCTCTGCTTCCACTGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 601
Query 621 AATGACGGAAGAGTATTCACCAGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 680
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 AATGACGGAAGAGTATTCACCGGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 661
Query 681 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 721
Query 741 TCCTTTAGCCGGATCGCTTGGTATAACGGAACAGTGCATCGACTCTATAGTCTCCAGAGC 800
| ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 722 TACTTTAGCCGGATCGCTTGGTATAACTGAACAGTGCATCGAGTCTATCGTCTCCAGAGC 781
Query 801 TTCCTCAGCTGATCCTTCACTCTTCGGTTGGCCAGTAAACGATGGCGGCGGAAGAGGAAA 860
|||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 782 TTCCTCAGCTGATCCTTCTCTCTTCGGTTGGCCTGTAAACGA------C------GG--- 826
Query 861 CATCTCCGCCACCGATCTGCAACTTATACCCGGCGGCGCGGCGAAATCTCGAAAGAAACC 920
|||||||||||| ||||| || ||||||||||| ||||||||||||||||||||
Sbjct 827 ------CGCCACCGATCTTCAACTAATCCCCGGCGGCGCAGCGAAATCTCGAAAGAAACC 880
Query 921 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 940
Query 981 CTTCAAAACTGTGATCCTATCAATGAGATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1040
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 941 CTTCAAAACTGTGATCCTATCAATGAAATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1000
Query 1041 CTGTTTGATTTGTTACGCTAAGAAGCACATTCCCGGGATTCTACGTTCTAACCGGAAACC 1100
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1001 CTGTTTAATTTGTTACGCTAAGAAGCACATTCCCGGAATTCTACGTTCTAACCGGAAACC 1060
Query 1101 GCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAACAGAGAGAACTACTGGAAACAAT 1160
||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1061 GCCATCGTCATCTTCTACTGCAGTGTCAGAGAATGAACAGAGAGAACTACTGGAGACTAT 1120
Query 1161 AACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCCTCAACAACGAGATTCCTCTTCGG 1220
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1121 AACCTCTAATCTTCCATTAGATAAAAGCTCAATCTCCTCAACAACGAGATTCCTCTTCGG 1180
Query 1221 CTTATTACGAACCGCAATCATCCTCAACGCCGCCGAGATTTGCCGTGATCTGCTGGAGAG 1280
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1181 CTTATTACGAACCGCAATCATCCTCAACGCCTCCGAGACTTGCCGTGATCTGCTGGAGAG 1240
Query 1281 AAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTC 1340
|||||||||| | ||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1241 AAAGATCGGAACACAGCTAGAGAGAGCCACACTCGATGACCTGCTCGTCCCTAGCTACTC 1300
Query 1341 ATACCTCAACGAGACTTTATACGATGTTGATTTGGTAGAGAGAATCTTAGGCCACTTTCT 1400
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1301 ATACCTCAACGAGACTTTGTACGATGTTGATTTGGTAGAGAGAATCTTAGGTCACTTTCT 1360
Query 1401 CGACACCTTGGAACAATCCAACACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCT 1460
||||||||||||||| || ||||||||| || |||||| |||||||||||||||||||||
Sbjct 1361 CGACACCTTGGAACAGTCAAACACCGCCGTAATCGAAGCTGACGGAAAATCTCCGTCGCT 1420
Query 1461 GATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCT 1520
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1421 TATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCT 1480
Query 1521 CAAATCGGATAAGTTCTACAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGA 1580
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1481 CAAATCGGATAAATTTTTCAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGA 1540
Query 1581 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1629
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1589
Score = 501 bits (271), Expect = 9e-141
Identities = 295/307 (96%), Gaps = 0/307 (0%)
Strand=Plus/Plus
Query 1901 GAGAAAGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTTAGAGAGAATCAGGTGCTTC 1960
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1765 GAGAAGGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTGAGAGAGAATCAGGTGCTTC 1824
Query 1961 GCTTGGATATGGATACGATGAGGACGCGTGTTCATCGGTTAGAGAGAGAGTGCTCGAACA 2020
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1825 GCTTGGATATGGATACGATGAGGACGCGTGTTCACCGGTTAGAGAGAGAGTGCTCCAATA 1884
Query 2021 TGAAGAAAGTGATCGCGAAGATTGATAAGGAAGGTTCATCACCGGCGACGACGACTGATC 2080
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1885 TGAAGAAAGTGATCGCGAAGATTGATAAAGATGGTTCATCACCGGCGACGACGACTGATC 1944
Query 2081 GGCCGAGAAGTTGGTCGATTACCAAAAAATTCGGATGTAAATTCAAGACACAGGTCTGCG 2140
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1945 GGCCGAGAAGTTGGTCGATTACCAAAAAGTTGGGATGTAAATTCAAGACACAGGTCTGCG 2004
Query 2141 ATTCACACGAAGCAACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2200
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2005 ATTCGCACGAGGCTACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2064
Query 2201 GATTTTA 2207
|||||||
Sbjct 2065 GATTTTA 2071
Score = 237 bits (128), Expect = 3e-61
Identities = 138/143 (97%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 1682 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1651
Query 1742 TACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCACGCGATCGCCGGGACGTTATTAG 1801
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1652 TACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCATGCGATCGCCGGGACGTTATTAG 1711
Query 1802 CTGCTCAATCGCCGTCTACGTCA 1824
| |||||||| |||||| |||||
Sbjct 1712 CAGCTCAATCTCCGTCTCCGTCA 1734
> Ahg903809 jgi|Araly1|903809|Al_scaffold_0003_937
Length=747
Score = 1123 bits (608), Expect = 0.0
Identities = 671/702 (96%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 25 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 84
Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 85 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 144
Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 145 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 204
Query 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317
|||| ||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 205 TTTTGTCGTGATCTGTTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 264
Query 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 265 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 324
Query 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436
|||||||||||| || |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 325 GAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 383
Query 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 384 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 443
Query 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 444 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 503
Query 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 504 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 563
Query 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 564 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 623
Query 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 683
Query 1737 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCA 1778
||||||||||||||||||||||||||||||||| ||||||||
Sbjct 684 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCA 725
> Ahg916833 jgi|Araly1|916833|Al_scaffold_0008_1584
Length=723
Score = 1081 bits (585), Expect = 0.0
Identities = 652/685 (95%), Gaps = 2/685 (0%)
Strand=Plus/Plus
Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
|||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAATTTCAGAGAATGAA 60
Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 120
Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 121 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 180
Query 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317
|||||||||||||| |||||||||||||| || | ||||||||||||||||||||||||
Sbjct 181 ATTTGCCGTGATCTATTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 240
Query 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 300
Query 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436
||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 301 GAGAGAATCTTAG-CTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 359
Query 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 360 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGAAAATTAATCGACGGATTTCTCGC 419
Query 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 479
Query 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 480 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 539
Query 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 540 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 599
Query 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 GAAACTGACGTTGGAAGCATGCACACACGCCGCGCAAAACGAGTGGCTTCCGCTACGAGC 659
Query 1737 CGTCGTACAAGTTCTCTTCTTCGAG 1761
|||||||||||||||||||||||||
Sbjct 660 CGTCGTACAAGTTCTCTTCTTCGAG 684
> Ahg913391 jgi|Araly1|913391|Al_scaffold_0001_3645
Length=600
Score = 643 bits (348), Expect = 0.0
Identities = 393/415 (95%), Gaps = 2/415 (0%)
Strand=Plus/Plus
Query 1303 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1362
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243
Query 1363 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 1421
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302
Query 1422 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 1481
||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362
Query 1482 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 1541
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422
Query 1542 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 1601
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482
Query 1602 CGACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGG 1661
| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 483 CAACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGG 542
Query 1662 CGTGATGGATTGTCAGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 1716
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 CGTGATGGATTGTCAGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597
Score = 274 bits (148), Expect = 2e-72
Identities = 174/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60
Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120
Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177
Query 1258 ATTTGC 1263
||||||
Sbjct 178 ATTTGC 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89588256240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5