BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G66560.1 Length=2378 Score E Sequences producing significant alignments: (Bits) Value Ahg496949 jgi|Araly1|496949|fgenesh2_kg.8__2765__AT5G66560.1 2242 0.0 Ahg903809 jgi|Araly1|903809|Al_scaffold_0003_937 1123 0.0 Ahg916833 jgi|Araly1|916833|Al_scaffold_0008_1584 1081 0.0 Ahg913391 jgi|Araly1|913391|Al_scaffold_0001_3645 643 0.0 > Ahg496949 jgi|Araly1|496949|fgenesh2_kg.8__2765__AT5G66560.1 Length=2071 Score = 2242 bits (1214), Expect = 0.0 Identities = 1485/1609 (92%), Gaps = 46/1609 (3%) Strand=Plus/Plus Query 30 TCTCTTTCTTATGATTTAGGATTCCAATTCCTTCCCTTTCCCCTTCTTGTTCTCTCCATA 89 ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 18 TCTGTTTCTCATGATCTAGGATTCCAATTCCTTCCCCTTCCCCTTCTTGTTCTCTCCATA 77 Query 90 TTCTCCTCTTTAGAAAGAGATAGAGAGAGTCTTGtttttttCCTGTC-TTGAGT--GATA 146 | | || |||||||||||| || | | |||||||||| ||||| || | || Sbjct 78 -T-T-ATCATTAGAAAGAGAT--AG-G-CTATTGTTTTTTT-CTGTCTTTTTTTCAGAGC 129 Query 147 tttttttCAGAGCCCTGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTACCTCCAA 206 ||| ||| | | ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 130 CTTTCTTC--A---CAGAGTTGTTGTCTCCATTAATGGCGTCAGAGAAATCTAGCTCCAA 184 Query 207 GGGCCAAGCATGGTTTTGTACGACTGGGTTACCTAGTGACATTGAAATCGAAGTTGATGA 266 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| | Sbjct 185 GGGCCAAGCATGGTTTTGTACAACTGGCTTACCTAGCGACATTGAAATCGAAGTTGATCA 244 Query 267 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 CATGACATTCCATCTCCATAAGTTTCCACTCATGTCAAAGAGCAGGAAACTTCACAGGTT 304 Query 327 GATTACAGAGCAAGAGACTAGATCTTCCTCTTCCATGGCGCTGATAACTGTAATAGACCC 386 |||||||||||||||||||||||| | | |||||||||||| ||||||| || ||||| Sbjct 305 GATTACAGAGCAAGAGACTAGATC-T--TGTTCCATGGCGCTAATAACTGAAACGGACCC 361 Query 387 AAAAGTAGAAGAGACTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGAT--A-AAGA 443 |||||||||||||| ||||||||||||||||||||||||||||||||||||| | || | Sbjct 362 AAAAGTAGAAGAGAGTGACAAGAAAGGTAAAGGCCATGAAATCGAGGACGATGAAGAAAA 421 Query 444 AGAAGAAGAAGT-G--GAAGAGCAGGAGATCGAAGAAAATGGTTATCCTCACATCAAACT 500 |||||||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 422 AGAAGAAGAAGTAGACGAAGAGCAAGAGATCGAAGAAAATGGCTATCCTCACATAAAACT 481 Query 501 CGAGGATTTTCCCGGTAGTTCAGAGAGCTTTGAGATGGTGGCGAAGTTCTGCTACGGCGT 560 |||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 482 CGAGGACTTCCCCGGAAGTTCAGAGAGCTTTGAGATGGTGGCCAAGTTCTGCTACGGCGT 541 Query 561 CAAGATGGACCTCTCTGCTTCCACCGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 620 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 542 CAAGATGGACCTCTCTGCTTCCACTGTTGTTCCACTTCGTTGCGCCGCCGAACACCTCGA 601 Query 621 AATGACGGAAGAGTATTCACCAGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 680 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 602 AATGACGGAAGAGTATTCACCGGATAACCTAATTTCCAAGACTGAGAGGTTTCTCTCTCA 661 Query 681 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 TTCCGTCTACAAGAGCTTGCGTGAATCCATTAAAGCTCTCAAAGCTTGTGAGTCAGTCTC 721 Query 741 TCCTTTAGCCGGATCGCTTGGTATAACGGAACAGTGCATCGACTCTATAGTCTCCAGAGC 800 | ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct 722 TACTTTAGCCGGATCGCTTGGTATAACTGAACAGTGCATCGAGTCTATCGTCTCCAGAGC 781 Query 801 TTCCTCAGCTGATCCTTCACTCTTCGGTTGGCCAGTAAACGATGGCGGCGGAAGAGGAAA 860 |||||||||||||||||| |||||||||||||| |||||||| | || Sbjct 782 TTCCTCAGCTGATCCTTCTCTCTTCGGTTGGCCTGTAAACGA------C------GG--- 826 Query 861 CATCTCCGCCACCGATCTGCAACTTATACCCGGCGGCGCGGCGAAATCTCGAAAGAAACC 920 |||||||||||| ||||| || ||||||||||| |||||||||||||||||||| Sbjct 827 ------CGCCACCGATCTTCAACTAATCCCCGGCGGCGCAGCGAAATCTCGAAAGAAACC 880 Query 921 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 881 GAGTAGAGATTCGAACATGGAGCTGTGGTTTGAAGATCTGACGCAACTGAGTCTTCCGAT 940 Query 981 CTTCAAAACTGTGATCCTATCAATGAGATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1040 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 941 CTTCAAAACTGTGATCCTATCAATGAAATCAGGAGATCTGAGCTCCGATATCATAGAGAG 1000 Query 1041 CTGTTTGATTTGTTACGCTAAGAAGCACATTCCCGGGATTCTACGTTCTAACCGGAAACC 1100 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1001 CTGTTTAATTTGTTACGCTAAGAAGCACATTCCCGGAATTCTACGTTCTAACCGGAAACC 1060 Query 1101 GCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAACAGAGAGAACTACTGGAAACAAT 1160 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || || Sbjct 1061 GCCATCGTCATCTTCTACTGCAGTGTCAGAGAATGAACAGAGAGAACTACTGGAGACTAT 1120 Query 1161 AACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCCTCAACAACGAGATTCCTCTTCGG 1220 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1121 AACCTCTAATCTTCCATTAGATAAAAGCTCAATCTCCTCAACAACGAGATTCCTCTTCGG 1180 Query 1221 CTTATTACGAACCGCAATCATCCTCAACGCCGCCGAGATTTGCCGTGATCTGCTGGAGAG 1280 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 1181 CTTATTACGAACCGCAATCATCCTCAACGCCTCCGAGACTTGCCGTGATCTGCTGGAGAG 1240 Query 1281 AAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTC 1340 |||||||||| | ||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 1241 AAAGATCGGAACACAGCTAGAGAGAGCCACACTCGATGACCTGCTCGTCCCTAGCTACTC 1300 Query 1341 ATACCTCAACGAGACTTTATACGATGTTGATTTGGTAGAGAGAATCTTAGGCCACTTTCT 1400 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1301 ATACCTCAACGAGACTTTGTACGATGTTGATTTGGTAGAGAGAATCTTAGGTCACTTTCT 1360 Query 1401 CGACACCTTGGAACAATCCAACACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCT 1460 ||||||||||||||| || ||||||||| || |||||| ||||||||||||||||||||| Sbjct 1361 CGACACCTTGGAACAGTCAAACACCGCCGTAATCGAAGCTGACGGAAAATCTCCGTCGCT 1420 Query 1461 GATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCT 1520 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 1421 TATGCTCGTCGGGAAATTAATCGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCT 1480 Query 1521 CAAATCGGATAAGTTCTACAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGA 1580 |||||||||||| || | ||||||||||||||||||||||||||||||||||||||| || Sbjct 1481 CAAATCGGATAAATTTTTCAATCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGA 1540 Query 1581 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1629 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1541 TGACGGACTTTACAGAGCCGTCGACGTATATCTCAAGGCGCATCCATGG 1589 Score = 501 bits (271), Expect = 9e-141 Identities = 295/307 (96%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 1901 GAGAAAGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTTAGAGAGAATCAGGTGCTTC 1960 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1765 GAGAAGGACAGGTGGACGCTGGGAAATGGAAGAAGACGGTGAGAGAGAATCAGGTGCTTC 1824 Query 1961 GCTTGGATATGGATACGATGAGGACGCGTGTTCATCGGTTAGAGAGAGAGTGCTCGAACA 2020 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || | Sbjct 1825 GCTTGGATATGGATACGATGAGGACGCGTGTTCACCGGTTAGAGAGAGAGTGCTCCAATA 1884 Query 2021 TGAAGAAAGTGATCGCGAAGATTGATAAGGAAGGTTCATCACCGGCGACGACGACTGATC 2080 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1885 TGAAGAAAGTGATCGCGAAGATTGATAAAGATGGTTCATCACCGGCGACGACGACTGATC 1944 Query 2081 GGCCGAGAAGTTGGTCGATTACCAAAAAATTCGGATGTAAATTCAAGACACAGGTCTGCG 2140 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1945 GGCCGAGAAGTTGGTCGATTACCAAAAAGTTGGGATGTAAATTCAAGACACAGGTCTGCG 2004 Query 2141 ATTCACACGAAGCAACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2200 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2005 ATTCGCACGAGGCTACGATGGTTGATCATAGATCACGACGGTCTTGAATTGTTTTCGATT 2064 Query 2201 GATTTTA 2207 ||||||| Sbjct 2065 GATTTTA 2071 Score = 237 bits (128), Expect = 3e-61 Identities = 138/143 (97%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 1682 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1592 TGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGCCGTCG 1651 Query 1742 TACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCACGCGATCGCCGGGACGTTATTAG 1801 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 1652 TACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCATGCGATCGCCGGGACGTTATTAG 1711 Query 1802 CTGCTCAATCGCCGTCTACGTCA 1824 | |||||||| |||||| ||||| Sbjct 1712 CAGCTCAATCTCCGTCTCCGTCA 1734 > Ahg903809 jgi|Araly1|903809|Al_scaffold_0003_937 Length=747 Score = 1123 bits (608), Expect = 0.0 Identities = 671/702 (96%), Gaps = 2/702 (0%) Strand=Plus/Plus Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 25 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 84 Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 85 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 144 Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 145 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 204 Query 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317 |||| ||||||||| |||||||||||||| || | |||||||||||||||||||||||| Sbjct 205 TTTTGTCGTGATCTGTTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 264 Query 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 265 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 324 Query 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436 |||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 325 GAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 383 Query 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496 || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 384 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 443 Query 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 444 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 503 Query 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 504 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 563 Query 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676 |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct 564 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 623 Query 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 624 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 683 Query 1737 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAACTCCGGCA 1778 ||||||||||||||||||||||||||||||||| |||||||| Sbjct 684 CGTCGTACAAGTTCTCTTCTTCGAGCAGTTACAGCTCCGGCA 725 > Ahg916833 jgi|Araly1|916833|Al_scaffold_0008_1584 Length=723 Score = 1081 bits (585), Expect = 0.0 Identities = 652/685 (95%), Gaps = 2/685 (0%) Strand=Plus/Plus Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137 |||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||| Sbjct 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAATTTCAGAGAATGAA 60 Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 120 Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 121 TCAACAACGAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 180 Query 1258 ATTTGCCGTGATCTGCTGGAGAGAAAGATCGGATCGCAGCTAGAGAGAGCCACGCTCGAC 1317 |||||||||||||| |||||||||||||| || | |||||||||||||||||||||||| Sbjct 181 ATTTGCCGTGATCTATTGGAGAGAAAGATCAGAACACAGCTAGAGAGAGCCACGCTCGAC 240 Query 1318 GATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATACGATGTTGATTTGGTA 1377 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 241 GATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATACGATGTTGATTTGGTA 300 Query 1378 GAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAACACCGCCATAGTCGA 1436 ||||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 301 GAGAGAATCTTAG-CTCACTTTCTCGACACCTTGGAACAATCAAACACCGCCGTAGTCGA 359 Query 1437 AGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAATCGACGGATTTCTCGC 1496 || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 360 AGCTGACGGAAAATCTCCGTCGCTTATGCTCGTCGGAAAATTAATCGACGGATTTCTCGC 419 Query 1497 GGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAATCTAGCCATCTCACT 1556 ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 TGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAATCTAGCCATCTCACT 479 Query 1557 CCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGTCGACGTATATCTCAA 1616 ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 480 CCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGTCGACGTATATCTCAA 539 Query 1617 GGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTCA 1676 |||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| Sbjct 540 GGCGCATCCATGGGTATCGGAAGCAGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTCA 599 Query 1677 GAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAACGAGCGGCTTCCGCTACGAGC 1736 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 600 GAAACTGACGTTGGAAGCATGCACACACGCCGCGCAAAACGAGTGGCTTCCGCTACGAGC 659 Query 1737 CGTCGTACAAGTTCTCTTCTTCGAG 1761 ||||||||||||||||||||||||| Sbjct 660 CGTCGTACAAGTTCTCTTCTTCGAG 684 > Ahg913391 jgi|Araly1|913391|Al_scaffold_0001_3645 Length=600 Score = 643 bits (348), Expect = 0.0 Identities = 393/415 (95%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 1303 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1362 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243 Query 1363 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 1421 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302 Query 1422 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 1481 ||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||| Sbjct 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362 Query 1482 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 1541 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422 Query 1542 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 1601 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482 Query 1602 CGACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGG 1661 | ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 483 CAACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGG 542 Query 1662 CGTGATGGATTGTCAGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 1716 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 543 CGTGATGGATTGTCAGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597 Score = 274 bits (148), Expect = 2e-72 Identities = 174/186 (94%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60 Query 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197 ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120 Query 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257 ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177 Query 1258 ATTTGC 1263 |||||| Sbjct 178 ATTTGC 183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89588256240 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5