BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66570.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951584 jgi|Araly1|951584|scaffold_803471.1 1808 0.0
Ahg915004 jgi|Araly1|915004|Al_scaffold_0001_5258 285 5e-76
> Ahg951584 jgi|Araly1|951584|scaffold_803471.1
Length=1121
Score = 1808 bits (979), Expect = 0.0
Identities = 1067/1110 (96%), Gaps = 3/1110 (0%)
Strand=Plus/Plus
Query 85 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCTACATTCCTCCAGTCGGCGAAGATCGC 144
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 14 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGC 73
Query 145 CACCGCTCCTTCTCGCGGAAGTTCTCACCTCCGATCGACTCAAGCCGTCGGCAAATCTTT 204
|||||||||||||||||| ||| |||||||||| || |||||| ||||||||||||||||
Sbjct 74 CACCGCTCCTTCTCGCGGCAGTGCTCACCTCCGGTCTACTCAATCCGTCGGCAAATCTTT 133
Query 205 TGGGCTCGAAACTTCCTCGGCTCGCCTCACTTGCTCCTTCCAGTCTGACTTTAAGGACTT 264
||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 134 CGGGCTAGATACTTCCTCTGCTCGCCTCACTTGCTCCTTCCAATCTGACTTCAAGGACTT 193
Query 265 CACCGGTAAATGCTCCGACGCTGTCAAAATCGCCGGATTCGCTCTTGCCACCTCTGCTCT 324
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253
Query 325 CGTCGTCTCGGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCA 384
||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313
Query 385 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCTACTATTGA 444
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 314 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCAACTATTGA 373
Query 445 CGGTGGCTCTGAGACTTTCTCGTTCAAACCCGGAAAGTATGCAGGAAAGAAGTTCTGCTT 504
||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 374 CGGTGGCTCTGAGACATTCTCGTTCAAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGCTT 433
Query 505 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTT 564
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 434 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAGTT 493
Query 565 CCAGAACACAAAGCTCATGACCCGTCTTACCTACACCCTTGACGAGATCGAAGGACCCTT 624
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 494 CCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCCTT 553
Query 625 CGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTATGCTGC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 554 TGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCTGC 613
Query 685 AGTCACAGTCCAACTTCCAGGAGGTGAACGTGTGCCATTCCT-TTTCACAGTCAAACAGC 743
|||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 614 AGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTT-ACAGTCAAACAGC 672
Query 744 TTGACGCCTCAGGCAAACCAGACAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 803
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 673 TTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 732
Query 804 GCTCTTCCTTCTTGGACCCAAAGGGCCGTGGTGGATCCACAGGATATGACAACGCCGTGG 863
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 733 GCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTGG 792
Query 864 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAACGTGAAGAACA 923
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 793 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAATGTGAAGAACA 852
Query 924 CTGCCGCTTCAGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 983
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 CGGCAGCTTCGGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 912
Query 984 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCGGATACTGACTTGGGTGCTAAGGTAC 1043
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 913 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGGTAC 972
Query 1044 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1032
Query 1104 TTTTCCGTTGATTGTGTTTGATGATAATGATAACATCTTTTGATGCTTTCTTCGTTTATC 1163
||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1033 TTT-CTGTTGATTGTGTTTGATGATAATGACAACATCTTTTGATGCTTTCTTCGTTTATC 1091
Query 1164 TCTCTTATATAAAATGCACATGCCTAAGAT 1193
||||||||| ||||||||||||||||||||
Sbjct 1092 TCTCTTATAAAAAATGCACATGCCTAAGAT 1121
> Ahg915004 jgi|Araly1|915004|Al_scaffold_0001_5258
Length=276
Score = 285 bits (154), Expect = 5e-76
Identities = 194/213 (91%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 531 CAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTTCCAGAACACAAAGCTCATGACCCGTC 590
|||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 38 CAGACAGTGTAAGCAAGAACGCGACTCCTGAGTTCCAGAACACCAAGCTCATGACCCGTC 97
Query 591 TTACCTACACCCTTGACGAGATCGAAGGACCCTTCGAGGTTGCTTCAGACGGAAGCGTCA 650
| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 98 TCACCTACACCCTTGTCGAGATCGAAGGACCCTTTGAGGTTGCTTCAGACGGAAGCGTCA 157
Query 651 ATTTCAAGGAAGAAGATGGAATCGACTATGCTGCAGTCACAGTCCAACTTCCAGGAGGTG 710
||||||||||||||||||||||||| | |||||| || |||||||| |||||||||||||
Sbjct 158 ATTTCAAGGAAGAAGATGGAATCGATTGTGCTGCTGTGACAGTCCAGCTTCCAGGAGGTG 217
Query 711 AACGTGTGCCATT-C-CTTT-TCACAGTCAAAC 740
| |||||||||| | |||| | || |||||||
Sbjct 218 AGTGTGTGCCATTACTCTTTAT-ACTGTCAAAC 249
Score = 60.2 bits (32), Expect = 3e-08
Identities = 37/39 (95%), Gaps = 2/39 (5%)
Strand=Plus/Plus
Query 398 ATGGAAGTGAAAGGAACTGGAACGGCTAAC-CAGTGCCC 435
|||||||||||||||||||||||||||||| | ||||||
Sbjct 1 ATGGAAGTGAAAGGAACTGGAACGGCTAACAC-GTGCCC 38
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5