BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66590.1
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496946 jgi|Araly1|496946|fgenesh2_kg.8__2762__AT5G66590.1 863 0.0
> Ahg496946 jgi|Araly1|496946|fgenesh2_kg.8__2762__AT5G66590.1
Length=653
Score = 863 bits (467), Expect = 0.0
Identities = 579/631 (92%), Gaps = 16/631 (3%)
Strand=Plus/Plus
Query 5 tttttttATACATCTTTAATGACTATATAAACCAAACACTGATCTTTTTCAGGTTGCGAA 64
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TTTTTTTATATACCTTTAATGACTATATAAACCGAACACTGATCTTTTTCAGGTTGCGAA 60
Query 65 T--A--AACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCATCT 120
| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TAAACCAACCAAGAATGGCTTTAACCCATCACATCATCTTCGTGGCACTTCTTGTCGTCT 120
Query 121 CCGTCAAAGCCATCTCACCGGCGGCGAAACTGAAACCCAAACAAATCGTTTCCACTTCTC 180
|||||| ||||||||| | || ||||| ||| |||||||||||| | | || |
Sbjct 121 CCGTCACAGCCATCTCTTCTGCTGCGAATCTGGAACCCAAACAAA-------C-CGTC-C 171
Query 181 CTCCACCTCCTCCAACAATCTCTGCAGCAGCTAAAGCTTTCACCGATGCGCACAACAAGG 240
|| | || |||| |||||||| |||| |||||||||||||| ||||||||||||||||
Sbjct 172 CT--A-CTTCTCCGGCAATCTCTACAGCGGCTAAAGCTTTCACGGATGCGCACAACAAGG 228
Query 241 CCAGAGCCATGGTTGGTGTTCCACCACTAGTTTGGAGCCAGACGTTGGAAGCTGCTGCGA 300
||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 229 CCAGAGCCATGGTCGGTATTCCACCACTAGTTTGGAGCCAGACGCTGGAAGCTGCTGCGA 288
Query 301 GTCGGTTGGCTCGTTACCAGAGGAACCAAAAGAAGTGTGAGTTCGCGAGTCTAAACCCTG 360
||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 289 GTCGGCTGGCTCGTTACCAGAGGAACCAGAAGAAGTGTGAGTTCGCGAGTCTTAACCCTG 348
Query 361 GAAAATACGGCGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 420
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GGAAATACGGAGCGAACCAGCTTTGGGCTAAGGGCTTAGTAGCCGTGACACCGTCTCTTG 408
Query 421 CTGTGGAGACTTGGGTGAAGGAGAAACCTTTCTACAATTATAAGTCAGACACGTGTGCTG 480
| |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 409 CGGTGGAGACTTGGGTGAAGGAGAAAACTTTCTACAACTACAAGTCAGACACGTGTGCTG 468
Query 481 CGAACCACACGTGCGGGGTTTATAAACAAGTCGTCTGGAGAAACTCTAAAGAGCTCGGGT 540
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 469 CGAACCACACGTGCGGGGTCTATAAACAAGTCGTGTGGAGAAACTCTAAAGAGCTCGGAT 528
Query 541 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTGTTGACCATTTGTTTTTACAATCCTC 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 529 GTGCTCAAGCCACGTGTACGAAAGAGTCAACGGTTTTGACCATTTGTTTTTACAATCCTC 588
Query 601 CTGGAAATGTAATTGGCCAAAAGCCTTACTA 631
| |||||| ||||||||||||||||||||||
Sbjct 589 CGGGAAATATAATTGGCCAAAAGCCTTACTA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25504231473
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5