BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66600.4
Length=2414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496943 jgi|Araly1|496943|fgenesh2_kg.8__2759__AT5G66600.1 2905 0.0
> Ahg496943 jgi|Araly1|496943|fgenesh2_kg.8__2759__AT5G66600.1
Length=2461
Score = 2905 bits (1573), Expect = 0.0
Identities = 1783/1884 (95%), Gaps = 16/1884 (1%)
Strand=Plus/Plus
Query 542 TGCCAGCTTTCCAGAAAAGAAAAGAGTTGAAGGAGATAAAACCTCAAATAGTTCTCATGA 601
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 583 TGCCAGCTTTCCAGAAAAGAAAAGAGTTGAGGGAGATAAAACCTCAAACAGTTCTCATGA 642
Query 602 AGCCTCTCAACGAATGAAGCTGGACATGGGACGTTCAAATGAATCAAAGCATAATCAATA 661
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 643 AGCCTCTCAACGAATGAAGCTGGACATGGGGCGTTCAAATGAATCAAAGCGTAATCAATA 702
Query 662 TCATTCAAACACGGAGACTTCATTGAAGCAAGAGATTACTCACCTCGAGACAAGATTACA 721
|||||||||||| || ||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 703 TCATTCAAACACCGAAACTTCATTGAAGCAAGAGATTACGCAGCTCGAGACAAGATTAGA 762
Query 722 AGATCAGTTTAAGGTTCGTTGTGCATTAGAGAAAGCCTTAGGTTATCGAACAGCATCTTC 781
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 763 AGATCAGTTTAAGATTCGTTGTGCATTAGAGAAAGCGTTAAGTTATCGAACAGCCTCTTC 822
Query 782 TTACGTACTGACTGAAACAAACGACATTGCCATGCCTAAGCCAGCTACTGATTTAATCAA 841
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 823 TTACGTACTGACTGAAACAAACCACATTGCCATGCCTAAGACAGCTACTGATTTAATCAA 882
Query 842 AGACGTTGCGGTGCTCGAAATGGAAGTTATACATTTGGAACAGTATCTTCTTTCATTATA 901
||| ||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGATGTTGCGGTGTTGGAGATGGAAGTTATACATTTGGAACAGTATCTTCTTTCATTATA 942
Query 902 CAGAAAAGCCTTTGAGCAGCAAATCTCTTCTGTATCTCCAAATTTAGAGAACAAGAAGCC 961
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 943 TAGAAAAGCCTTTGAGCAGCAAATCTCTTCTGTATCTCCAAATTCAGAGAGCAAGAAGCC 1002
Query 962 AAAATCTCCTCCTGTTACAACCCCTAGAAGGCGTCTAGACTTTTCTGAAGATGATGATAC 1021
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1003 CAAATCTCCTCCTGTTACAACCCCTAGAAGGCGGCTAGATTTTTCTGAAGATGATGATAC 1062
Query 1022 CCCCTCGAAAACAGATCAACACACAGTTCCTCTGCTTGATGATAATCAAAATCAATCAAA 1081
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1063 CCCCTCGAAAACAAATCAACACACAGATCCTCTGCTTGATGATAATCAAAATCAATCAAA 1122
Query 1082 GAAAACAGAGATTGCTGCGGTTGACCGAGACCAGATGGACCCCAGTTTTCGCCGTAGTCA 1141
||||||||||||| |||||||||||| ||||||||||||||||| |||||| ||||| ||
Sbjct 1123 GAAAACAGAGATTCCTGCGGTTGACCAAGACCAGATGGACCCCAATTTTCGTCGTAGCCA 1182
Query 1142 CTCTCAACGTTCGGCATTTGGGAGTAGAAAAGCTTCTCCCGAAGATTCTTGGGGTAAAGC 1201
|||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||
Sbjct 1183 CTCTCAACGTTCGGCATTTGAGAGTAGAAAAGCTTCTCCAGAAGATTCTTGGAGTAAAGC 1242
Query 1202 CAGCCGCTCTTGTCACTCACAGCCACTGTATGTGCAGAATGGAGATAA-CCTAATCAGTC 1260
|| ||||||||||||||| || || |||||||||||||||||||| || ||||||||||
Sbjct 1243 CATCCGCTCTTGTCACTCCCAACCGCTGTATGTGCAGAATGGAGA-AATTCTAATCAGTC 1301
Query 1261 TAGCTGAACATCTTGGCACCCGAATCTCGGATCATGTTCCAGAAACACCCAACAAGTTAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TAGCTGAACATCTTGGCACCCGAATCTCGGATCATGTTCCAGAAACACCCAACAAGTTAT 1361
Query 1321 CTGAAGGAATGGTCAAGTGCATGTCAGAAATATACTGCAAGCTTGCAGAGCCACCTTCTG 1380
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CTGAAGGAATGGTCAAGTGTATGTCAGAAATATACTGCAAGCTTGCAGAGCCACCTTCTG 1421
Query 1381 TGCTACATCGTGGGCTTTCATCTCCAAACTCGTCTTTATCATCAAGTGCATTTTCGCCCT 1440
| |||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1422 TACTACATCGGGGGCTTTCGTCTCCAAACTCATCTTTATCATCGAGTGCATTTTCGCCCT 1481
Query 1441 CTGACCAATACGATACATCGAGCCCTGGATTCGGAAACAGCTCCTCTTTTGATGTTCGGC 1500
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1482 CTGACCAATACGATACATCGAGCCCTGGATTCGGAAACAACTCCTCTTTTGATGTTCGGT 1541
Query 1501 TAGATAACTCTTTCCATGTAGAAGGAGAAAAGGACTTCAGTGGACCTTACAGCAGCATTG 1560
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1542 TAGACAACTCTTTCCATGTAGAAGGAGAAAAAAACTTCAGTGGACCTTACAGCAGCATTG 1601
Query 1561 TTGAAGTGCTTTGCATTTACAGAGACGCCAAAAAGGCCAGTGAGGTGGAAGATCTTCTGC 1620
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1602 TTGAAGTGCTTTGCATTTACAGAGACGCCAAAAAAGCCAGTGAGGTCGAAGATCTTCTGC 1661
Query 1621 AAAACTTCAAGTCACTTATTAGTAGATTGGAGGAAGTCGATCCAAGGAAGTTGAAACATG 1680
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AAAACTTCAAGTCACTAATTAGTAGATTGGAGGAAGTCGATCCAAGGAAGTTGAAACATG 1721
Query 1681 AAGAGAAGCTAGCGTTTTGGATAAATGTGCACAATGCACTTGTGATGCATGCGTTTTTAG 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1722 AAGAGAAGCTAGCGTTTTGGATAAATGTGCACAATGCACTTGTGATGCATGCTTTTTTAG 1781
Query 1741 CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTTCTACTCAAGGCTGCATATA 1800
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1782 CTTATGGGATTCCACAGAACAATGTGAAGAGAGTCTTACTGCTACTCAAGGCTGCATATA 1841
Query 1801 ACATTGGTGGACACACAATTAGCGCCGAAGCGATACAAAGTTCGATTCTTGGGTGCAAAA 1860
| |||||||| ||||| ||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1842 ATGTTGGTGGATACACAGTTAGCGCGGAAGCTATACAAAGTTCGATTCTTGGATGCAAAA 1901
Query 1861 TGTCTCATCCTGGACAGTGGCTTAGACTACTATTTGCTTCGAGGAAATTCAAAGCAGGGG 1920
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1902 TGTCTCATCCTGGACAGTGGCTTAGACTACTATTTGCTTCGAGAAAATTCAAAGCAGGAG 1961
Query 1921 ATGAAAGATTAGCTTATGCAATCGATCATCCTGAGCCTCTCCTGCATTTTGCACTTACTT 1980
|||||||||||||||| ||||| |||||||||||||||||||| || |||||||||||||
Sbjct 1962 ATGAAAGATTAGCTTACGCAATTGATCATCCTGAGCCTCTCCTACACTTTGCACTTACTT 2021
Query 1981 CAGGCAGCCACTCCGATCCCGCGGTTCGTGTATATACACCGAAAAGAATCCAGCAAGAGC 2040
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2022 CAGGCAGCCACTCCGATCCCGCGGTTCGTGTATATACACCAAAAAGAATCCAGCAAGAGC 2081
Query 2041 TTGAAACGTCGAAAGAAGAGTACATAAGAATGAACTTAAGCATACGCAAGCAGAGAATCC 2100
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2082 TTGAAACGTCGAAAGAAGAATACATAAGAATGAACTTAAGCATACACAAGCAGAGAATCC 2141
Query 2101 TATTGCCAAAGCTTGTGGAGACGTTTGCAAAAGACTCCGGTTTATGTCCGGCGGGTTTGA 2160
||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||| |
Sbjct 2142 TATTGCCAAAGCTTGTGGAAACGTTTTCAAAAGACTCAGGTTTATGTCCTGCGGGTTTAA 2201
Query 2161 CAGAGATGGTTAACCGGAGTATACCGGAGTCTTCAAGGAAATGTGTAAAGAGATGTCAAT 2220
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2202 CAGAGATGGTTAACCGGAGTATACCGGAGTCTTCAAGGAAATGTCTAAAGAGATGTCAAT 2261
Query 2221 CTAGTACTAGTAAACCACGAAAGACAATTGATTGGATCCCTCACAGCTTTACATTTAGAT 2280
|||||| |||||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 2262 CTAGTA---GTAAACCACGCAAGCCTATTGATTGGATCCCTCACAGCTTTACATTTAGAT 2318
Query 2281 ATCTTATTCTTAGAGAAGCTGCCAAATGAAATTATTCCAAG-ATTCATA-ATATATA--- 2335
||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||
Sbjct 2319 ATCTTATTCTTAGAGAAGCTGCCAAATGAAATTGTTC-AAGGATTCATATATATATATAT 2377
Query 2336 --GA-AG--AGAGTGTGTGTATATATATAAGATATCGCTGTCTATGTCCCCACTTTCTGA 2390
|| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2378 AAGAGAGTGAGAGTGTGTGTGTATATATAAGATATCGCTGTCCATGTCCCCACTTTCTGA 2437
Query 2391 TTATTATAATGTTGTTTCTGTCTC 2414
|||| |||||||||||||||||||
Sbjct 2438 TTATGATAATGTTGTTTCTGTCTC 2461
Score = 455 bits (246), Expect = 7e-127
Identities = 291/310 (94%), Gaps = 13/310 (4%)
Strand=Plus/Plus
Query 1 ACTTTGTCTATTTTGATTTTGACCATGTATGTAGATTTCTAG--CTCTCTC-Cttttttt 57
|||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||
Sbjct 1 ACTTTGTCTATTTTGATTTTGACCATCTATGTAGATTTCTAGCTCTCTCTCTCTTTTTTT 60
Query 58 GGCCGATTTGGTTGAGAATTTGACGACGACTCGTGGGGTCGTGTACACA--TTGGTGACT 115
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GGCCGATTTGGTTGAGAATTTGACGACGACTCGTGGGGTCGTGTACACACATTGGTGACT 120
Query 116 GGTCTTTTGACACGAGTCGCCTCTCTTCTTCTCCCTACCCATTTCCATGAAAACATGAGC 175
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 121 GGTCTTTTGACACGAGTCGCCTCTCTTTTTCTCACTACC-ATTTCCATGAAAACATGAGC 179
Query 176 CATAGCTAACTTTTCTT-CTTCAATTGAAACCCACCACGCTTCTTTTGTTCA-TTTTTAA 233
|||||||||||||| || ||||||||||| ||||||||||||||||||| || |||||||
Sbjct 180 CATAGCTAACTTTTTTTTCTTCAATTGAA-CCCACCACGCTTCTTTTGT-CACTTTTTAA 237
Query 234 TATTTAAAGCTTCCTCCTTTATTGCTAAAA-GATTGAAGATTCGCAAGTTTTTATAGTTT 292
| || ||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 238 TGTTAAAAGCTTCCTCCTTTATTGCTAAAAAGATTGAAGATTCGCAAGTTT--ATAGTTT 295
Query 293 CCGTTGGCCT 302
||||||||||
Sbjct 296 CCGTTGGCCT 305
Score = 158 bits (85), Expect = 2e-37
Identities = 163/196 (83%), Gaps = 23/196 (12%)
Strand=Plus/Plus
Query 306 CAGAAGCTCTGC--TTTGGA-TAGTGACA-TAATTGTCGCTACAGTCTCTTGAAACATTT 361
||| |||||||| |||||| | |||||| ||||||| |||||| |||||| || ||| |
Sbjct 405 CAGCAGCTCTGCTTTTTGGATTGGTGACACTAATTGTTGCTACAATCTCTTCAAGCATCT 464
Query 362 GCTGTAACTCTTTAGCTAAGGAGAAAA-AGTCAGCTCCTTTGTGGTCATTCTGAGACAAA 420
||||| |||||| ||||||||||||| ||||||||||||| | | || ||||||
Sbjct 465 ACTGTATCTCTTTTGCTAAGGAGAAAATAGTCAGCTCCTTT-T-G------TG-GACAAA 515
Query 421 TGGGATTTGGAGTAGGTGGTGGAGGTGGTAGAATGTTGGATTTGAGGATTGTCCAAAATC 480
|||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||
Sbjct 516 TGGGATTTGGAGTA---GGT---GGT-G--GAATGTTGGATTTGAGGATTGTCCAAAATC 566
Query 481 ACAAGCGTTCAAAGAG 496
||||||||||||||||
Sbjct 567 ACAAGCGTTCAAAGAG 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90959505060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5