BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66610.2
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1 1568 0.0
Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1 422 6e-117
Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264 372 6e-102
Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683 211 1e-53
> Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1
Length=1746
Score = 1568 bits (849), Expect = 0.0
Identities = 1221/1389 (88%), Gaps = 71/1389 (5%)
Strand=Plus/Plus
Query 102 TTT-AGAGAATGTGGTGTTTGTCCTGCTTT-AA--ACCTTCCACTAAACATGATCCCTCT 157
||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 27 TTTCAGAGGATGTGGTGTCTGTCCTGCTTTCAACTTCCTTCCACTAAACATGATCCCTCT 86
Query 158 GAGGATCGTTTTGAAGAAGAAACAAATATCGTTACAGGTATTTCTCTGTATGAAGATGTC 217
||||||||||||||| |||||| ||||| ||||||| |||||| |||||||||||||||
Sbjct 87 CAGGATCGTTTTGAAGCAGAAACTAATATTGTTACAGATATTTCACTGTATGAAGATGTC 146
Query 218 ATCTTACGTCAGAGAAGATCAGAAGCTGATCAGATAGAATGGGCTATTCAAGATAGCTTC 277
|||||||||| || ||||||||||||||| |||||||| |||||||||||||||
Sbjct 147 ATCTTACGTC-----AG---AGAAGCTGATCAGATTGAATGGGCCATTCAAGATAGCTTC 198
Query 278 AA-CCCGCAAGAAACTTCTCG-T-T-GT---CGTCAGCGAGAGGAGGATGATCAGATAGC 330
|| ||| ||||||||| |||| | | || |||||||||||||||||||||||||||||
Sbjct 199 AAGCCC-CAAGAAACTACTCGTTGTCGTCAGCGTCAGCGAGAGGAGGATGATCAGATAGC 257
Query 331 GCGTGGTTTGCAATATGTGGAAGAAACTGAGCTTGATAAATCAGTTGTGGAC-GAAGAAG 389
|| |||||||||||| |||||||||||||||||||||||||| | ||| | | || |
Sbjct 258 GCTTGGTTTGCAATACGTGGAAGAAACTGAGCTTGATAAATC--T-GTG-ATTGTTGACG 313
Query 390 ATCAGCAGCTTTCTAAGATTGTTGAGGAGAGTTTGAAGGAGAAAGGCAAAAGTAAGCAAT 449
| | || ||| || | | || | | | | | | |||| ||| | | |||||
Sbjct 314 A---G-AG-TTTG-AA-A--G---AG-A-A-T--G--GCA-AAAG--AAA-GCA-GCAAT 349
Query 450 TTGAAGATGATCAAGTGGAAAATGATGAACAGCAAGCTCTGATGGTTCAGGAGAGTCTAT 509
|| ||||||||||||||||| ||| ||||| || ||||| || ||||||||||||||||
Sbjct 350 CTGGAGATGATCAAGTGGAAATTGACGAACAACATGCTCTAATTGTTCAGGAGAGTCTAT 409
Query 510 ACATGGTGGAGCTTTCTGCTCAACTTGAAGAAGATAAAAACATTTCAACAATACCTCCGC 569
|| ||||||||| | || ||| ||||||||||||||||||||| | ||||||||||||
Sbjct 410 ACTTGGTGGAGCCTCCTCCTCGACTTGAAGAAGATAAAAACATGCCCCCAATACCTCCGC 469
Query 570 TGAATGAAGATGCGCAGCTTCAGAAGGTTATTTGGGAAAGCGCGAAGGGTAAAGGCCAAA 629
|||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 470 TGAATGAAGATGAGCAGCTTCAGAAGGTTATTTGGGAAAGTTCCAAGGGTAAGGGCCAAA 529
Query 630 TAGAGCATTTCAAAGATCCAGTGGAAGAAGATGGAAAT-CTTCCAAGGGTAGATCTCAAC 688
||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 530 TAGAGCATTCCAAAGATCCAGTGGAAGAAGATG-AAATTCTTCCAAGGCCAGATCTCAAC 588
Query 689 GTTAACCATCCTCATAGCATATGT-GATGGTTGCAAATCTGCGATTGAATATGGAAGATC 747
|| |||||||||| |||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 589 GTGAACCATCCTCGTAGCATATGTCG-TGGTTGCAACTCTGCGATTGAATATGGAAGATC 647
Query 748 TGTTCATGCCTTGGGTGTTAATTGGCATCCTGAATGTTTCTGTTGTCGTTATTGCGACAA 807
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 TGTTAATGCCTTGGGTGGTAATTGGCATCCTGAATGTTTCTGTTGTCTTTATTGCGACAA 707
Query 808 ACCAATCGCTATGCACGAG-TTTTCAAACACAAAAGGGAGGTGTCATATAACCTGCTACG 866
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 708 ACCAATCGCTATGCACGAGCTTTT-AAACACAAAAGGGAGGTGTCATATAACCTGCTACA 766
Query 867 AGC-GTAGTCACCCAAACTGCCATGTCTGCAAAAAGAAGTTTCCT------G-GTA-G-- 915
||| | |||||||||||||| ||||||||||||||||||||||| | | | |
Sbjct 767 AGCAGC-GTCACCCAAACTGCTATGTCTGCAAAAAGAAGTTTCCTTCAACCGAGGAAGGT 825
Query 916 A-A-AGTATAAAGAACATCCCTTCTGGAAGGAAAAGTACTGCCCTTTTCATGAAGTTGAT 973
| | |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 826 AGAGAGTATAAACAACATTCCTTCTGGAAAGAAAAGTACTGCCCTTTTCATGAAGTTGAT 885
Query 974 GGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGAAGTATGTAATG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCTGGGGAACGAAGTATGTAATG 945
Query 1034 CTTGCTGACAATCGGTGGCTATGCGTAAAATGTATGGAATGCGCGGTTATGGATACTTAT 1093
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 946 CTTACTGACAATCGGTGGCTATGCGTAAAATGTATGGAATGCGCAGTTATGGATACTTAT 1005
Query 1094 GAGTGCCAACCATTGCACTTTGAAATCCGTGAATTCTTCGGAAGCTTAAACATGAAGGTT 1153
|| |||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1006 GAATGCCAACCTTTGCACTTTAAAATCCGTGAATTCTTCGAAAGCTTAAACATGAAGGTT 1065
Query 1154 GAGAAAGAATTCCCTCTTCTTTTGGTGGAGAAAGAAGCGCTGAAAAAAGCTGAGGCGCAA 1213
||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1066 GAGAAAGAATTTCCTCTTCTTTTGGTGGAGAAAGAAGCGCTGAATAAAGCTGAGGTGCAA 1125
Query 1214 GAAAAGATCGACAATCAGCATGGGGTTGTAACCAGAGGTATTTGCCTGTCTGAAGGGCAG 1273
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 1126 GAAAAGATTGACAATCAGCATGGGACGGTAACCAGAGGTATTTGTTTGTCTGAAGAGCAG 1185
Query 1274 ATTGTCAATAGTGTCTTTAAAAAG-CCAACCATGGGGCCAAACGGCGAGCTAGTAAGCTT 1332
| |||||||| |||||| |||||| |||| ||||||||| ||| |||||||| || |
Sbjct 1186 ACTGTCAATAATGTCTT-AAAAAGGCCAAACATGGGGCCGAACAATGAGCTAGTGGGCAT 1244
Query 1333 GGGTACAGAACCTCAAAAGGTTGTTGGTGGATGTGAGGTCACTGCAATTCTCATCCTATA 1392
|| ||||||| |||||| |||| ||||||| |||||||||| ||||||||| ||| | ||
Sbjct 1245 GGTTACAGAATCTCAAAGGGTTATTGGTGGTTGTGAGGTCATTGCAATTCTTATCATTTA 1304
Query 1393 TGGACTTCCTAGGTTACTAACTGGATATATCTTGGCTCATGAGATGATGCATGCTTGGCT 1452
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1305 TGGACTGCCTAGGTTACTAACTGGATATATCTTGGCCCATGAGATGATGCATGCTTGGCT 1364
Query 1453 TAGACTCAA 1461
||||||||
Sbjct 1365 AAGACTCAA 1373
Score = 276 bits (149), Expect = 5e-73
Identities = 163/170 (96%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 1731 TTTGCAAGGATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAGGAAAG 1790
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1538 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAAGAAAG 1597
Query 1791 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAAAGTATTCAACACTGGA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1598 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAAAGTATTCAACATTCGA 1657
Query 1851 CGAAACCAGATTCAAATCTTTGAAGCACCTAATATAGGACAAATCGAAAC 1900
|||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1658 AGAAACCAGATTCAAATCTTTGAAGCAGCTAATATAGGACACATCGAAAC 1707
Score = 182 bits (98), Expect = 1e-44
Identities = 118/127 (93%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 1571 GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAGTCACAGACATACTCCAGT 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1411 GAAGAAGGAATATGCCAAGTGCTAGGCCACATGTGGTTGGAGTCACAGACATACTCCTCT 1470
Query 1631 TCTGCAGCTGCATCATCAGCTTCTTCTTCTTC---GAGGACTCCAGCTGCTAATGCATCA 1687
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||
Sbjct 1471 TCTGCAGCTGCATCATCAGCTTCTTCTTCTTCTTCGAGCACTCCAGCTGCTAGTGCAACA 1530
Query 1688 AAGAAAG 1694
|| ||||
Sbjct 1531 AAAAAAG 1537
> Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1
Length=1422
Score = 422 bits (228), Expect = 6e-117
Identities = 458/566 (81%), Gaps = 28/566 (5%)
Strand=Plus/Plus
Query 914 AGAAAGTATAAAGAACATCCCTTCTGGAAGGA-AAAGTACTGCCCTTTTCATGAAGTTGA 972
||| |||| || || ||| | ||||||||||| ||| ||||| ||| |||||| | |||
Sbjct 510 AGAGAGTACAATGAGCATTCGTTCTGGAAGGAGAAA-TACTGTCCTCGTCATGACGATGA 568
Query 973 TGGAACTCCCAAGTGTTGCAGTTGTGAAAGATTAGAGCCCT-GGGGAACGAAGTATGTAA 1031
||||||| ||||||||||||| ||||||||||||||| ||| |||||||||| |||||||
Sbjct 569 TGGAACTGCCAAGTGTTGCAGCTGTGAAAGATTAGAG-CCTAGGGGAACGAACTATGTAA 627
Query 1032 TGCTTGCTGACAATCGGTGGCTATG-CGTAAAATGTATGGAATGC-GCGGTTATGGATAC 1089
|||||| |||| |||||||||||| | || ||||||||| || | ||||||||||||||
Sbjct 628 TGCTTGGTGACTTTCGGTGGCTATGTC-TAGAATGTATGGGAT-CAGCGGTTATGGATAC 685
Query 1090 TTATG-AGTGCCAACCATTGCACTTTGAAATCCGTGAATTCTTCGGAAG-CTTAAACATG 1147
| | | ||| ||| || |||||||||||||||||||||||||||| ||| ||| | |
Sbjct 686 TAACGAAGT-CCAGCCTTTGCACTTTGAAATCCGTGAATTCTTCG-AAGGCTTGTTCTTC 743
Query 1148 AAGGTTGAGAAAGAATTCCCTCTTCTT-TTGGTGGAGAAAGAAGCGCTGAAAAAAGCTGA 1206
|||||||| |||||||| |||||||| ||| || ||||| |||||||||| ||||||||
Sbjct 744 AAGGTTGACAAAGAATTTTCTCTTCTTCTTGTTG-AGAAACAAGCGCTGAATAAAGCTGA 802
Query 1207 GGC-GCAAGAAAAGATCGACAATCAGCATGGGGTTGTAACCAGAGGTATTTGCCTGTCTG 1265
|| | | || ||||| ||| | || | || | |||||||||||| ||||| ||||||
Sbjct 803 GGAAG-AGGAGAAGATTGACTACCATCGTGCAGCCGTAACCAGAGGTCTTTGCATGTCTG 861
Query 1266 AAGGGCAGATTGTCA-ATAGTGTCTTTAAAAAG-CCAACCATGGGGCCAAACGG-CGAGC 1322
||| ||| |||||| | ||| | | ||| | |||| |||||||| || | |||
Sbjct 862 AAGAGCAAATTGTCCCA-AGTATAAT-AAAGGGGCCAAGGATGGGGCCGGACAATC-AGC 918
Query 1323 TAGTAA--G-CTTGGGTACAGAACCTCAAAAGGTTGTTGGTGGATGTGAGGTCACTGCAA 1379
|| ||| | | | | |||||| ||||||| || | | ||| || ||||| |||| |
Sbjct 919 TAATAACAGACATAGTTACAGAGTCTCAAAAAGT-GA-G-TGGCTGCGAGGTTACTGGGA 975
Query 1380 TTCTCATCCTATATGGACTTCCTAGGTTACTAACTGGATATATCTTGGCTCATGAGATGA 1439
|||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 976 TTCTCATCATATATGGACTTCCTAGGTTATTAACAGGATATATCTTGGCTCACGAGATGA 1035
Query 1440 TGCATGCTTGGCTTAGACTCAATGGT 1465
|||||||||||||| |||||||||||
Sbjct 1036 TGCATGCTTGGCTTCGACTCAATGGT 1061
> Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264
Length=2109
Score = 372 bits (201), Expect = 6e-102
Identities = 397/490 (81%), Gaps = 20/490 (4%)
Strand=Plus/Plus
Query 927 AACATCCCTTCTGGAAGGAA-AAGTACTGCCCTT-TTCATGAAGTTGATGGAACTCC-CA 983
||||||| |||||| ||||| | ||||| |||| ||||||| ||| ||||| || ||
Sbjct 1151 AACATCCGTTCTGGGAGGAATTA-TACTG-CCTTGCTCATGAAACTGACGGAAC-CCACA 1207
Query 984 AGTGTTGCAGTTGTGAAAGATTAGAGCCCT-GGGGAACGAAGTATGTAATGCTTGCTGAC 1042
||||||||||||| ||| | |||||| ||| |||||| || | ||||| ||||| |||
Sbjct 1208 AGTGTTGCAGTTGCGAACGGTTAGAG-CCTCAGGGAACAAACTTTGTAACGCTTGGTGAT 1266
Query 1043 AATCGGTGGCTATGCGTAAAATGTATGGAATGC-GCGGTTATGGATACTTATGAGTGCCA 1101
||| | |||||| | ||||||||| || | || ||||||||| || |||| |||||
Sbjct 1267 GGTCGATTTCTATGCTTGGAATGTATGG-ATTCTGCCGTTATGGATTCTGATGAATGCCA 1325
Query 1102 ACCAT-TGCACTTTGAAATCCGTGAATTCTTCGGAA-GCTTAAACATGAAGGTTGAGAAA 1159
|| | |||| ||||| || ||||| |||||| ||| |||||||||||||| ||||||||
Sbjct 1326 GCC-TCTGCATTTTGACATGCGTGATTTCTTC-GAAGGCTTAAACATGAAGATTGAGAAA 1383
Query 1160 GAATTCCCTCTTCTTTTGGTGGAGAAAGAAGCGCTGAAAAAAGCTGAGGCGCAAGA-AAA 1218
||||| ||| ||||||||||||| ||| |||||||||| ||||||||| | |||| |||
Sbjct 1384 GAATTTCCTTTTCTTTTGGTGGAAAAACAAGCGCTGAATAAAGCTGAGAAGGAAGAGAAA 1443
Query 1219 GATCGACAATCAGCATGGGGTTGTAACCAGAGGTATTTGCCTGTCTGAAGGGCAGATTGT 1278
|| ||| || || ||| ||| || ||||||||||||||||||||||||| |||| |||
Sbjct 1444 -ATTGACTATGAGTATGAGGTGGTCACCAGAGGTATTTGCCTGTCTGAAGCACAGACTGT 1502
Query 1279 CAATAGTGTCTTTA-AAAAGCCAACCATGGGGCCAAACGGCGAGCTAGTAAGCTTGGGTA 1337
| |||||||| | | ||| ||||| ||||||||| ||| | ||||| || || ||| ||
Sbjct 1503 CGATAGTGTC-TCACAAAGGCCAATCATGGGGCCGAACAACAAGCTAATAGGCATGGCTA 1561
Query 1338 CAGAACCTCAAAAGGTTGTTGGTGGA-TGTGAGGTCACTGCAATTCTCATCCTATATGGA 1396
|||||||||||| ||| | || || || ||||||||||| ||||||||||||||||||
Sbjct 1562 CAGAACCTCAAAGGGTAACTCGT-GAGTGCGAGGTCACTGCGATTCTCATCCTATATGGA 1620
Query 1397 CTTCCTAGGT 1406
||||||||||
Sbjct 1621 CTTCCTAGGT 1630
Score = 93.5 bits (50), Expect = 5e-18
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 1403 AGGTTACTAACTGGATATATCTTGGCTCATGAGATGATGCATGCTTGGCTTAGACTCAAT 1462
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1726 AGGTTACTAACAGGATATATCTTGGCTCATGAGATGATGCATGCTTATCTTAGACTCAGT 1785
Query 1463 GG 1464
||
Sbjct 1786 GG 1787
> Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683
Length=1257
Score = 211 bits (114), Expect = 1e-53
Identities = 240/298 (81%), Gaps = 19/298 (6%)
Strand=Plus/Plus
Query 1182 AGAAAGAAGCGCTGAAAAAAGCTGAGGCGCAAGAAAAGATCGACAATCAGCATGGGGTTG 1241
||||||||||||| || |||||||| | |||| ||||| |||||||| ||||| | |
Sbjct 749 AGAAAGAAGCGCTTAACAAAGCTGAAAAGGAAGAGAAGATTGACAATCATTATGGGATGG 808
Query 1242 -TAACCAGAGGTATTTGCCTGTCTGAAGGGCAGATTGTCA-ATAGTG--TC----TTTAA 1293
| ||||||||||||||||||||||||| |||||| |||| | |||| || ||||
Sbjct 809 CT-ACCAGAGGTATTTGCCTGTCTGAAGAGCAGATGGTCACA-AGTGTTTCAAAAATTAA 866
Query 1294 AAAGCCAACCATGGGGCCAAAC-GGCGAGCTAGTA--AG-CTTGGGTACAGAA-CCTCAA 1348
|| || || |||||||| ||| | |||||||| || | | | || || |||||
Sbjct 867 AAGGCAAAGGATGGGGCCGAACAAAC-AGCTAGTATTAGAGATAGTTCCA-AAGTCTCAA 924
Query 1349 AAGGTTGTT-GGTGGATGTGAGGTCACTGCAATTCTCATCCTATATGGACTTCCTAGGTT 1407
| |||| || | | || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 925 ATGGTTCTTCGAAAG-TGCGAGGTCACTGCAATTCTCATCTTATATGGACTTCCTAGGTT 983
Query 1408 ACTAACTGGATATATCTTGGCTCATGAGATGATGCATGCTTGGCTTAGACTCAATGGT 1465
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 984 CCTAACAGGATATATCTTGGCTCATGAGATGATGCATGCGTGGCTTAGACTCAAGGGT 1041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5