BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66620.1
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264 843 0.0
Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1 139 7e-32
> Ahg918513 jgi|Araly1|918513|Al_scaffold_0008_3264
Length=2109
Score = 843 bits (456), Expect = 0.0
Identities = 698/808 (86%), Gaps = 44/808 (5%)
Strand=Plus/Plus
Query 192 TGAAGCTGAACAGCTTGATTTGGCCATTCAAGAAT--T-T--TC-TCGTCAAGAGGAGGA 245
||||||||||||||||||||||||||||||||||| | | || || ||||||||||||
Sbjct 357 TGAAGCTGAACAGCTTGATTTGGCCATTCAAGAATCCTCTCGTCTTCTTCAAGAGGAGGA 416
Query 246 GGAGGAAAGAAGGCGCACCAGAGAGTTAGAAAAC-GATGCGCAGATAGCAAATGTTCTTC 304
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||
Sbjct 417 AGAGGAAAGAAGGCGCACCAGAGAGTTAG-AAACTGATGCTCAGATAGCAAATGCTCTTC 475
Query 305 AACACGAGGAAAGAGAAAGGCTGATCAATAAGAAAACTGCATTGGAAGACGAAGAAGACG 364
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 476 AAGACGAGGAAAGAGAAAGGCTGATCAATAAGAAAACTGCATTGGAAGACGAAGAAAACG 535
Query 365 AGCTGCTTGCTAGGACT-TTAGAGGAGAGTTTAAAGGAGAACAACAGAAGAAAAATGTTT 423
||| |||||| | |||| || |||||||||||||||||||||| |||||||||| |||||
Sbjct 536 AGCAGCTTGCCAAGACTCTT-GAGGAGAGTTTAAAGGAGAACAGCAGAAGAAAACTGTTT 594
Query 424 GAAGAACAAGTGAACAAGGATGAACAGCTTGCTCTGATTGTTCAGGAGAGTCTGAACATG 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAAGAACAAGTGAAGAAGGATGAACAGCTTGCTCTGATTGTTCAGGAGAGTCTGAACATG 654
Query 484 GAAGAGTATCCTATTCGACTTGAAGAATATAAAAGTATATCTCGTAGAGCTCCGTTGGAT 543
||||||||||||| || | ||||||||||||||||||| |||| ||||||||||| ||||
Sbjct 655 GAAGAGTATCCTACTCAAATTGAAGAATATAAAAGTATTTCTCCTAGAGCTCCGTCGGAT 714
Query 544 GTAGATGAGCAGTTTGCTAAGGCTGTTAAGGAGAGTTTGAAGAACAAAGGTAAAGGAAAG 603
|||||| |||||||| ||||||||||||||| ||||| ||| ||||||| ||| |||||
Sbjct 715 GTAGATAAGCAGTTTAATAAGGCTGTTAAGGATAGTTTAAAGGACAAAGGCAAAAGAAAG 774
Query 604 CAATTTGAAGATGAACAAGTGAAGAAGGATGAGCAGCTTGCTTTGATTGTTCAGGAGAGT 663
||||||||||| |||| |||| |||| ||| | |||| |||| |||| | | |
Sbjct 775 CAATTTGAAGACGAACGAGTGCAGAATGATAAACAGCATGCTCTGAT-G----G-----T 824
Query 664 CTAAACATGGTAGAGTCTCCTCCTCGACTTGAAGAAAATAACAACATTTCCACTAGAGCT 723
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 -T---CA-GGTAGAGTCTCCTCCTCGACTTGAAGAAAATAACAACATTTCCACTAGAGCT 879
Query 724 CCTGTGGATGAAGATG-AGCAGCTTGCAAAGGCTGTTGAAGAGAGTTTGAAGGGGAAGGG 782
|||||||||||||||| | |||| | || | ||| |||||||| ||| |||| ||
Sbjct 880 CCTGTGGATGAAGATGTA-CAGC--G----GG-T-TTGG-GAGAGTTTCAAGAGGAATGG 929
Query 783 TCAAATAAAGCAATCAAAAGATGAGGTGGAAGGAGATGGAATGCTCCTAGA-GTTGAATC 841
||||||| ||||||| |||||||||||||||| |||||||| ||||| | | | ||||||
Sbjct 930 TCAAATAGAGCAATCCAAAGATGAGGTGGAAGAAGATGGAAAGCTCCCA-ATGGTGAATC 988
Query 842 CTCCTCCTAGCTTGTGTGGTGGTTGCAACTTTGCGGTTGAACATGGAGGATCTGTGAATA 901
| ||||||||| || ||||||||||||||| | | | || |||||| |||||||||||
Sbjct 989 CCCCTCCTAGCGTGCGTGGTGGTTGCAACTCGGTGATCGAGCATGGAAGATCTGTGAATG 1048
Query 902 TCTTGGGTGTTCTTTGGCATCCTGGATGTTTCTGTT-GTCG-TGCTTGTCA-CAAACCAA 958
||| || || ||||| |||||||| |||||| ||| || | |||||| || ||||||||
Sbjct 1049 TCTCGGATGCTCTTTTGCATCCTGAATGTTTA-GTTTGT-GATGCTTG-CAACAAACCAA 1105
Query 959 TTGCTATCCACGATATCGAAAACCATGT 986
|||||||||| || || ||||| ||||
Sbjct 1106 TTGCTATCCAGGAGATTAAAAACTATGT 1133
Score = 675 bits (365), Expect = 0.0
Identities = 446/485 (92%), Gaps = 6/485 (1%)
Strand=Plus/Plus
Query 1071 TAATCATCCGTTTTGGGAGGAAAGATACTGCCCTGTTCATGAAGCTGATGGAACTCC-CA 1129
||| |||||||| ||||||||| |||||||| || ||||||| |||| ||||| || ||
Sbjct 1149 TAAACATCCGTTCTGGGAGGAATTATACTGCCTTGCTCATGAAACTGACGGAAC-CCACA 1207
Query 1130 AATGCTGCAGTTGCGAAAGGTTAGAGCCT-AGGGAATCAAACTATGTAATGCTTGCTGAT 1188
| || |||||||||||| ||||||||||| |||||| |||||| ||||| ||||| ||||
Sbjct 1208 AGTGTTGCAGTTGCGAACGGTTAGAGCCTCAGGGAA-CAAACTTTGTAACGCTTGGTGAT 1266
Query 1189 GGTCGATGGCTATGCCTCGAATGTATGAATTCTGCCGTTATGGATTCTGATGAATGCCAG 1248
||||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1267 GGTCGATTTCTATGCTTGGAATGTATGGATTCTGCCGTTATGGATTCTGATGAATGCCAG 1326
Query 1249 CCTTTGCACTTTGACATGCGTGATTTCTTCGAAGGCTTAAACATGAAGATTGAGAAAGAA 1308
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CCTCTGCATTTTGACATGCGTGATTTCTTCGAAGGCTTAAACATGAAGATTGAGAAAGAA 1386
Query 1309 TTTCCTTTTCTTTTGGTGGAAAAACAAGCGCTGAATAAAGCTGAGAAGGAAGAGAAAATT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TTTCCTTTTCTTTTGGTGGAAAAACAAGCGCTGAATAAAGCTGAGAAGGAAGAGAAAATT 1446
Query 1369 GACTATCAGTATGAGGTGGTAACCAGAGGTATTTGCCTATCTGAAG-AGCAGATTGTCGA 1427
|||||| ||||||||||||| ||||||||||||||||| ||||||| | |||| ||||||
Sbjct 1447 GACTATGAGTATGAGGTGGTCACCAGAGGTATTTGCCTGTCTGAAGCA-CAGACTGTCGA 1505
Query 1428 TAGTGTCTCCCAAAGGCCAGTCAGGGGGCCAAACAACAAGCTAGTAGGCATGGCTACAGA 1487
||||||||| ||||||||| ||| |||||| |||||||||||| ||||||||||||||||
Sbjct 1506 TAGTGTCTCACAAAGGCCAATCATGGGGCCGAACAACAAGCTAATAGGCATGGCTACAGA 1565
Query 1488 ATCTCAAAAGGTAACTCGTGAGTGCGAGGTCACTGCAATTCTCATCCTATATGGACTTCC 1547
| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1566 ACCTCAAAGGGTAACTCGTGAGTGCGAGGTCACTGCGATTCTCATCCTATATGGACTTCC 1625
Query 1548 TAGGT 1552
|||||
Sbjct 1626 TAGGT 1630
Score = 566 bits (306), Expect = 3e-160
Identities = 358/383 (93%), Gaps = 3/383 (1%)
Strand=Plus/Plus
Query 1549 AGGTTACTAACAGGATATATTTTGGCTCACGAGATGATGCATGCTTATCTTAGACTCAAT 1608
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
Sbjct 1726 AGGTTACTAACAGGATATATCTTGGCTCATGAGATGATGCATGCTTATCTTAGACTCAGT 1785
Query 1609 GGACATAGGAACCTGAACAACATTTTGGAAGAAGGAATATGCCAAGTTCTAGGTCACCTG 1668
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1786 GGACATAGGAACCTGAACAACATTTTGGAAGAAGGACTATGCCAAGTGCTAGGTCACATG 1845
Query 1669 TGGTTGGATTCTCAGACATACGCCACTGCTGATGCTACTGCAGATGCATCATCATCAGCT 1728
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 1846 TGGTTGGAGTCTCAGACATACGCCACTGCTGATGCCACTGCAGATGCATCATCAGCA--T 1903
Query 1729 TCTTCTTCTTCCCGCACTCCTCCAGCTGCTAGTGCGTCAAAGAAAGGTGAGTGGTCTGAT 1788
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1904 -CTTCTTCTTCCCGCACTCCTCCAGCTGCTAATGCGTCAAAGAAAGGTGAGTGGTCTGAT 1962
Query 1789 TTCGACAAGAAACTGGTGGAGTTTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTC 1848
||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1963 TTCGAGAAGAAACTGGTGGGGTTTTGCAAGAATCAGATAGAGACAGATGATTCACCAGTC 2022
Query 1849 TACGGTCTTGGATTCAGGACAGTTAACGAGATGGTGACAAACTCCAGCCTCCAGGAAACC 1908
|||||| | |||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 2023 TACGGTGTCGGATTCAGGACAGTTAACGAGATGGTGAAAAATTCCAGCCTCCAGGATACC 2082
Query 1909 CTGAAAGAGATTCTTCGCCAGAG 1931
|| |||||||||||||||| |||
Sbjct 2083 CTCAAAGAGATTCTTCGCCGGAG 2105
Score = 444 bits (240), Expect = 1e-123
Identities = 287/310 (93%), Gaps = 2/310 (1%)
Strand=Plus/Plus
Query 68 AGGATCGTTTTGAAGCAGAAACTATTCACGTCATAGAAGTTTCACAGCATGAAGCTGACA 127
||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||| |
Sbjct 41 AGGATCGTTTTGATCCAGAAACTAGTCACGTCATACAAGTTTCACAGCATGAAGCTGATA 100
Query 128 TTCAGAA-AGCTAAACAGCGTTCTTTGGCCACTCATGAAGCTGAAAAGCTTGATTTGGCC 186
|||| || ||| ||||||| ||||||||||| | ||||||||||| ||||||||||||||
Sbjct 101 TTCA-AAGAGCCAAACAGCTTTCTTTGGCCAATTATGAAGCTGAACAGCTTGATTTGGCC 159
Query 187 ACTCATGAAGCTGAACAGCTTGATTTGGCCATTCAAGAATTTTCTCGTCAAGAGGAGGAG 246
| |||||||||| |||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 160 AATCATGAAGCTCAACAGCTTGATTTGGCCATTCAAGAAATCTCTCGTCAAGAGGAGGAA 219
Query 247 GAGGAAAGAAGGCGCACCAGAGAGTTAGAAAACGATGCGCAGATAGCAAATGTTCTTCAA 306
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 220 GAGGAAAGAAGGCGCACCAGAGAGTTAGAAAATGATGCGCAGATAGCAAATGCTCTTCAA 279
Query 307 CACGAGGAAAGAGAAAGGCTGATCAATAAGAAAACTGCATTGGAAGACGAAGAAGACGAG 366
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GACGAAGAAAGAGAAAGGCTGATCAATAAGAAAACTGCATTGGAAGACGAAGAAGACGAG 339
Query 367 CTGCTTGCTA 376
| | ||||||
Sbjct 340 CAGTTTGCTA 349
> Ahg496942 jgi|Araly1|496942|fgenesh2_kg.8__2758__AT5G66610.1
Length=1746
Score = 139 bits (75), Expect = 7e-32
Identities = 100/112 (89%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 1811 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTCTTGGATTCAGGACAG 1870
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1538 TTTGCAAGAATCAGATAGAAACAGACGATTCACCGGTCTACGGTGTTGGATTCAAGAAAG 1597
Query 1871 TTAACGAGATGGTGACAAACTCCAGCCTCCAGGAAACCCTGAAAGAG-ATTC 1921
||||| ||||||| || ||||||||||||| ||| ||||||| || ||||
Sbjct 1598 TTAACCAGATGGTCTCAGACTCCAGCCTCCATAAAATCCTGAAA-AGTATTC 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72714277705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5