BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66631.1
Length=1986
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951577 jgi|Araly1|951577|scaffold_803464.1 3016 0.0
> Ahg951577 jgi|Araly1|951577|scaffold_803464.1
Length=2028
Score = 3016 bits (1633), Expect = 0.0
Identities = 1872/1989 (94%), Gaps = 10/1989 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTCTATCATCTTCTCGAACCCTGTCAAGCCTTTTAACTCCGTAATTATCCATCAA 60
||||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 22 ATGTTTTCTCTCATCTTCTCGAACCCTGTCAAGCCTTTTAACTCTGTGATTATCTATCAA 81
Query 61 ATTCGATTCTTTTCCCGTGACCCATTCCCCAACAAAGTCCAGCACTACCTTTACAGAGCA 120
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 82 ATTCGATTCTTTTCCCGTGACCCATTCCCCAACAAAGTCCAACACTACCTTTACCGAGCA 141
Query 121 AACCTCATCGACTCTATCCGTCTTAGCCTCCGCTCCCCAACAACCTCAGACAGGACACTA 180
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||
Sbjct 142 AACCTCATCGACTCTATCCGTCTCAGCCTCCGCTCCACAACAACCTCAGACCCGACGCTT 201
Query 181 GCTTCTCTTCTAAACCACCGTCTTCTCGATTCCTTTGTCGTCAAAAACGCTTTACGCTCA 240
||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 202 CCTTCTCTTCTAGACCACCGTCTTCTCGACTCCTTTGTCGTCAAGAACGCTTTACGCTCA 261
Query 241 TCTCCTTCTGT-GTCTTCTGCTTGGTCTATCTTCAAAACTCTTAG-TCACAAAAGCCCTC 298
|||||||| || | ||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 262 TCTCCTTCCGTCG-CTTCTGCTTGGTCTATCTTCAAAACTCTTAGAGGA-AAAAAACCTC 319
Query 299 GCTTTTCTTTTGAAACTGAGACACTTCACGCCTTTGCCACTGTTCTTGCAAAGTTTCAGC 358
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 ACTTTTCTTTTGAAACTGAGACACTTCACGCTTTTGCCACTGTTCTTGCAAAGTTTCAGC 379
Query 359 GATCTTCAGAGCTTAACTCTCTAATTGGAGTTGTCAATGCTTGGAAATTCAGG--AATGT 416
||||||| |||||||||||||| |||||| ||||||||||| |||||||| || || ||
Sbjct 380 GATCTTCGGAGCTTAACTCTCTTATTGGACTTGTCAATGCTGGGAAATTC-GGCCAA-GT 437
Query 417 TCATTTCAGCTTTATGAATCTCTTGAACTTGTATGCAACTGCTGGTGATTTCGACTCGGT 476
|||||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 438 TCATTTCAGCTTCATGAATCTCATGAACTTGTACGCGACTGCTGGTGATTTCGACTCGGT 497
Query 477 TCTTAAGACGTGGGACGAGTATAGATGCTCAGGAGAGGAGAAGAAAGGCTGCACTGAGTC 536
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 498 TCTTAAGACGTGGGACGAGTATAGATTCTCAGGAGAGGAGAAGAAAGGCTGCACTGAGTC 557
Query 537 TTATAACATTGTGATGCAAGTTTACATGACTTTAGGTAAAGACTCTGAGGCTGTACAGAC 596
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 558 CTATAACATTGTTATGCAAGTTTACATGACTTTAGGTAAAGATTCTGAGGCTGTTCAGAC 617
Query 597 TTTTGATCAGATAATCAACGAAGGAGGGATTCCTAATTCAAGAACATTCACTATTATGAT 656
|||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 618 TTTTGATCAGATTATCAACCAAGGAGGGATTCCGAATTCAAGAACATTCACTATTATGAT 677
Query 657 TGAGCATCTTGTGAAATTGGGGAATCTTGATGCAGCCATGAAGATTTTTGAGACCTTGCC 716
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 678 TGAGCATCTTGTGAAATTGGGGAATCTTGATGCAGCCATGAAGGTTTTTGAGACATTGCC 737
Query 717 TTTGATGAGGATTACGCGGACTCTGAAGCATTATTCGGTTTTGGTTGAAGCCTTTGTTGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 738 TTTGATGAGGATTACGCGGACTCTGAAGCATTATTCGGTTTTGGTTGAAGCGTTTGTCGA 797
Query 777 TGCACAACGGTTTGATGAAGTCAAGACTCTGATTGCTGAGATGAAATCTGATGGGAAGTT 836
||| |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 798 TGCGCAACGGTTTGGTGAAGTCAAGACTCTGCTTGCTGAGATGAAAGCTGACGGGAAGTT 857
Query 837 CCCTAGTAGACGCATGCTTGAGCCCCTGAAACGCATGAGGGAGGCTGGTTTTGAACAT-G 895
|| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
Sbjct 858 TCCGAGTAGACGCATGCTTGAGCCTCTGAAACTCATGAGGGAGGCTGGTTTTGAAC-TGG 916
Query 896 AAACAGAGGAGTTTTTGAGAGAAATGTTGCCGGATGAGAGGATCAAGGACATTTCTATGT 955
||||||||||||| ||||||||||||||||| |||||||| || ||||| |||||||| |
Sbjct 917 AAACAGAGGAGTTCTTGAGAGAAATGTTGCCAGATGAGAGAATTAAGGATATTTCTATTT 976
Query 956 ATTCTATGGATAATCCCAGCGATAGCGAAGACGAAGGAGACGAGTACAAAGATGATGTTA 1015
||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||| | ||||
Sbjct 977 ATTCTATGGATAATCCCAGTGATAGCGAAGAAGAAGGAGATGAGCACAATGATAACGTTA 1036
Query 1016 ATGAAGCTCAAGTTAAGTTGAAGCCATGGCTGGATCCAAAAGCTTTAGCAACTTCGTTAA 1075
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATGAAGGTCAGGTTAAGTTGAAGCCATGGCTGGATCCAAAAGCTTTAGCAACTTCGTTAA 1096
Query 1076 AGAAGTGGAGCTCTGATGCAGTCACTGCTTTGGAAGAAGCTAACTTCGTTTGGACAAATC 1135
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1097 AGAAGTGGAGCTCTGATGCAGTCACTGCTTTGGAAGAAGCTAACTTTGTCTGGACAAATC 1156
Query 1136 TATTGGTCTGCAAGATGCTAAGAAACTTCAGAGCACCTGAAACAGCATGGAGTTTCTTCT 1195
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1157 TATTGGTCTGCAAGATGCTAAGAAACTTCAGATCACCTGAAACAGCATGGAGTTTCTTCT 1216
Query 1196 GCTGGGTGGCGATTCAACCAGGATTCACCCACGACGCCTATACGATTGAGAGAATGATGG 1255
||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||
Sbjct 1217 GCTGGGTGGCGATTCAACCCGGGTTCACCCACGATGCCTATACGGTTGAGAGAATGATGG 1276
Query 1256 CTATGTTAGCACGCAATGGCCAAGTTGAACTGGTCGATAAGCTCATCTCGAAAGTGAGAA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CTATGTTAGCACGCAATGGCCAAGTTGAACTGGTCGATAAGCTCATCTCGAAAGTGAGAA 1336
Query 1316 TCGAAGGGATCAAATTACCATTCAGCACCATCAGGCTGATCATTGATCTCTACGGAATTT 1375
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1337 TGGAAGGGATCAAATTACCATTCAGCACCATCAGACTAATCATTGATCTCTACGGAATTT 1396
Query 1376 CAAAGAAACCGGAAGCAGCCATCAAGGTTTTCAACGAAGACAGAACACTCTGCGGTTCGA 1435
|||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||
Sbjct 1397 CAAAGAAACCGGAAGCAGCCATCAAGGTTTTCCGCCAAGACAGAACTCTCTGCGGTTCGA 1456
Query 1436 TATCTGATTTCAACCTCATGCTGTTGTACTCATCCCTCTTGAGAACATTAACAAAATGCA 1495
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1457 TATCGGATTTCAACCTCATGCTGTTGTACTCATCCCTCTTGAGAACATTAACAAAGTGCA 1516
Query 1496 AGAGAAACGCAGAGGCTTTAGAAACGCTAGAAGATATGATGTTGACAGGAGTTTCTCCTG 1555
||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1517 AGAGAAACGCAGAAGCGTTGGAAACGCTAGAAGATATGATTTTGACGGGAGTTTCTCCCG 1576
Query 1556 ATATCCAGACGTTCTCGGGTTTAATGTACCACTTTGCATTGCAGGGAGAGATTCAAACAG 1615
|||||||||||||||| ||| | ||||| |||||||||||||||||||||||||| ||||
Sbjct 1577 ATATCCAGACGTTCTCTGGTCTGATGTATCACTTTGCATTGCAGGGAGAGATTCAGACAG 1636
Query 1616 TTGAGAGACTTTTCTCAATGGTGAGACAGATTGGTCTTGAACCTGATCCGTACATGTTAA 1675
||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1637 TTGAGAGACTTTTCTCAATGGTGAGACAGATCGGTCTTGACCCTGATCCTTACATGTTAA 1696
Query 1676 AGCTTCTAGTTCAAGCGTATTGCAGATGCGAAAGATCAGTGCTTGCTTACAGAGTGTTCC 1735
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 AGCTTCTTGTTCAAGCGTATTGCAGATGCGAAAGATCAGTGCTTGCTTACAGAGTGTTCC 1756
Query 1736 AAGACATGAAAGATTCGAATCTGATGCCTGACAGAGAGACGAAAGAGCTGCTTGTTAAGA 1795
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct 1757 AAGACATGAAAGATTCGAATCTGATGCCAGACAAAGAGACGAAAGAGCTGCTTGTCAAGA 1816
Query 1796 GTTTGTGGAGAGAAGAGAAGCGAAAAGAAGCGGCTGCGGTTGAAGAGAGCTACGAGGAAG 1855
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1817 GTTTGTGGAGAGAAGAGAAGCGAAAAGAGGCTGCTGCGGTTGAAGAGAGCTACGAGGAAG 1876
Query 1856 AGAATGATAACAAGAATAGTAGTAACGTTTTGCGTTTGGCGTTGAAGGGTCATGTGTGGA 1915
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1877 AGAATAATAACAAGAATAGTAGTAACGTTTCGCGTTTGGCGTTGAAGGGTCATGTGTGGA 1936
Query 1916 CCATTAGTTCTACAGACATTTCTCGAGTCTACAATCTCTACCGCGATTGTGTTCTGAAAA 1975
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1937 CCATTAGTTCTACAGACATTTCCCGAGTCTACAATCTCTACCGCGATTGTGTTTTGAAAA 1996
Query 1976 CTTCGACTT 1984
|||||||||
Sbjct 1997 CTTCGACTT 2005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74656880200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5