BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66640.2
Length=1765
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1 1853 0.0
Ahg922624 jgi|Araly1|922624|scaffold_103905.1 215 1e-54
Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683 169 8e-41
> Ahg496939 jgi|Araly1|496939|fgenesh2_kg.8__2755__AT5G66640.1
Length=1422
Score = 1853 bits (1003), Expect = 0.0
Identities = 1308/1448 (90%), Gaps = 49/1448 (3%)
Strand=Plus/Plus
Query 246 CCTGCTTCAAACATGATCCATCTAAGGATCCTTTAAATACCGCCTTGGTAATTTCACGGT 305
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CCTGCTTCAAACATGATCCATCTAAGGATCCTTTAAATACCGCCTTGGAAATTTCACGGT 60
Query 306 ATGAAGAAGAAGATCGCATGGTACGTCGgaaaagacaagaagaagatgaaaagattgaga 365
||||||||||||||||||||||||| ||||||| ||||||||| | ||||||||||||||
Sbjct 61 ATGAAGAAGAAGATCGCATGGTACGCCGGAAAATACAAGAAGAGGCTGAAAAGATTGAGA 120
Query 366 ttgaaagggttaaggaagaaagtttgaagCTAGCTAAGCAGGCGGAAGAAAAGAGAAGAT 425
|||||||||| |||||||||||| |||||| ||||||||||| ||| |||||||||||||
Sbjct 121 TTGAAAGGGTAAAGGAAGAAAGTCTGAAGCAAGCTAAGCAGGAGGAGGAAAAGAGAAGAT 180
Query 426 TAGAAGAGTCG---AAGGAGCAAGGCAAAAGAATA-CAAGTGGACGATGATCAGCTTGCA 481
|||||||| | ||||||||||||||||||| | |||| | |||||||||||||| |
Sbjct 181 CAGAAGAGTTGAACAAGGAGCAAGGCAAAAGAA-AGCAAGAGAACGATGATCAGCTTTC- 238
Query 482 AAGACTACTTCTAAAGATAAGGGACAAATTAATCATTCCAAAGATGTA-GTGGAAGAAGA 540
|| || ||||||||||||||||||||||| | |||||||||||||| | |||||| |||
Sbjct 239 AA-AC-ACTTCTAAAGATAAGGGACAAATCATTCATTCCAAAGATG-ATGTGGAAAAAGT 295
Query 541 TGTGAATCCTCCTCCTAGTATTGATGGCAAATCTGAGATTGGAGATGGAACATCTGTCAA 600
|||||||||||||||||| |||||||| ||||||| ||||| |||||||| ||||||||
Sbjct 296 TGTGAATCCTCCTCCTAGAATTGATGGAAAATCTGTGATTGAAGATGGAATTTCTGTCAA 355
Query 601 TCCTCGATGTTTATGTTGTTTTCATTGCCACAGACCATTTGTTATGCACGAGATTTTGAA 660
|||||||| ||||||||| |||||||||||||||||||||| | ||||||||||||| ||
Sbjct 356 TCCTCGATCTTTATGTTGCTTTCATTGCCACAGACCATTTGCTCTGCACGAGATTTTAAA 415
Query 661 GAAGGGAAAATTTCACATAGATTGCTACAAGGAGTACTACCGTAATCGCAACTGCTATGT 720
|||||||| |||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 416 GAAGGGAAGGTTTCACATAGATTGCTACAA--AG-AGTACCGTAATCGCAACTGCTATGT 472
Query 721 TTGCCAACAAAAGATTCCTGTAAATGCGGAAGGTATAAGAAAGTTCAGTGAGCATCCGTT 780
|||||||||||||||||| | ||| |||||||||||||| ||| || ||||||| ||||
Sbjct 473 CTGCCAACAAAAGATTCCTTTTAATACGGAAGGTATAAGAGAGTACAATGAGCATTCGTT 532
Query 781 CTGGAAGGAGAAATACTGTCCTATTCATGATGAGGATGGAACTGCCAAGTGTTGCAGCTG 840
|||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 533 CTGGAAGGAGAAATACTGTCCTCGTCATGACGATGATGGAACTGCCAAGTGTTGCAGCTG 592
Query 841 TGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTTGGTGA-TTTCCGGTGGCTAT 899
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 593 TGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTTGGTGACTTTC-GGTGGCTAT 651
Query 900 GTATAGAGTGTATGGGATCAGCGGTTATGGATACTAACGAAGTCCAGCCTTTGCACTTTG 959
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTCTAGAATGTATGGGATCAGCGGTTATGGATACTAACGAAGTCCAGCCTTTGCACTTTG 711
Query 960 AAATCCGTGAATTCTTCGAAGGCTTGTTCTTGAAGGTTGACAAAGAATTTGCTCTGCTTC 1019
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct 712 AAATCCGTGAATTCTTCGAAGGCTTGTTCTTCAAGGTTGACAAAGAATTTTCTCTTCTTC 771
Query 1020 TTGTCGAGAAACAAGCGCTTAATAAAGCTGAGGAAGAAGAGAAGATCGACTACCATCGTG 1079
|||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 772 TTGTTGAGAAACAAGCGCTGAATAAAGCTGAGGAAGAGGAGAAGATTGACTACCATCGTG 831
Query 1080 CAGCCGTAACCAGAGGTCTTTGCATGTCTGAAGAGCAAATTGTCCCAAGTATAATAAAAG 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 832 CAGCCGTAACCAGAGGTCTTTGCATGTCTGAAGAGCAAATTGTCCCAAGTATAATAAAGG 891
Query 1140 GGCCACGGATGGGACCGGACAATCAGCTAATAACAGACATAGTTACAGAGTCTCAAAGAG 1199
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 892 GGCCAAGGATGGGGCCGGACAATCAGCTAATAACAGACATAGTTACAGAGTCTCAAAAAG 951
Query 1200 TGAGTGGATTCGAGGTTACAGGGATTCTCATCATATATGGACTTCCTAGAC-ATGGAGAG 1258
||||||| | ||||||||| ||||||||||||||||||||||||||||| || | ||
Sbjct 952 TGAGTGGCTGCGAGGTTACTGGGATTCTCATCATATATGGACTTCCTAGGTTATTAACAG 1011
Query 1259 -AGTACCTCTTT--T-Attttttt-tG--TGATT---TT-GA-TCACA-GGTTATAAGAA 1305
| || |||| | | | || || || || || ||| | ||||||| |||
Sbjct 1012 GA-TATATCTTGGCTCACGAGATGATGCATGCTTGGCTTCGACTCA-ATGGTTATAGGAA 1069
Query 1306 TCTTAAGTTAGAGCTTGAAGAAGGATTATGTCAAGCGTTAGGTCTCAGATGGTTGGAGTC 1365
||||||||||||| ||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 1070 TCTTAAGTTAGAGTTTGAAGAAGGATTGTGCCAAGCGTTAGGCCTCAGGTGGTTGGAGTC 1129
Query 1366 TCAGACATTTGCATCTACTGAtgctgctgctgctgctgctgTAGCTTCTTCCTCTTCTTT 1425
||||||||||||||||||||||||||||||| ||| | | | ||||||| | | |||
Sbjct 1130 TCAGACATTTGCATCTACTGATGCTGCTGCTTCTG-T-C-G---CTTCTTC-T-T-CTT- 1179
Query 1426 TTCTTCTTCCACTGCTCCTCCAGCCGCTATCACGTCAAAGAAAAG---TGACGACTGGTC 1482
|||| || ||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1180 --CTTC--CC-CTGCTCCTCCAGCGGCTACCACGTCAAAGAAAAGCAGTGACGACTGGTC 1234
Query 1483 TATTTTCGAGAAGAAGCTCGTAGAGTTTTGCATGAATCAGATCAAAGAGGATGATTCACC 1542
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1235 TATTTTCGAGAAGAAGCTCGTAGAGTTTTGCATGAATCAGATCAAAGAAGATGATTCACC 1294
Query 1543 GGTCTACGGTCTCGGATTCAAACAAGTTTACGAGATGATGGTCTCAAATAACTACAACAT 1602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1295 GGTCTACGGTCTCGGATTCAAACAAGTTTACGAGATGATGGTCTCAAATAACTACAGCAT 1354
Query 1603 TAAGGATACCCTTAAAGATATCGTTAGCGCTTCCAACGCTACACCAGATTCAACGGTTTG 1662
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1355 TAAGGATACCCTTAAAGAGATCGTTAGCGCTTCCAATACTACACCAGATTCAACGTTTTG 1414
Query 1663 AATCAGCC 1670
||||||||
Sbjct 1415 AATCAGCC 1422
> Ahg922624 jgi|Araly1|922624|scaffold_103905.1
Length=1467
Score = 215 bits (116), Expect = 1e-54
Identities = 282/361 (78%), Gaps = 16/361 (4%)
Strand=Plus/Plus
Query 762 AGTTCAGTGAGCATCCGTTCTGGAAGGAGAAATACTGTCCTAT-TCATGATGAGGATGGA 820
||| || ||||||||| |||||| ||| ||||| ||| || | ||||||| |||||
Sbjct 593 AGTACAATGAGCATCCCTTCTGGTTGGAAAAATATTGTGCT-TGTCATGATTTTGATGGT 651
Query 821 ACTGCCAAGTGTTGCAGCTGTGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTT 880
||| ||||||||||||||||||||||||||||||||| | |||||||||||| || ||
Sbjct 652 ACTCCCAAGTGTTGCAGCTGTGAAAGATTAGAGCCTAAAGAAACGAACTATGTGATTATT 711
Query 881 GGTGATT-TCCGGTGGCTATGTATAGAGTGTA-TGGGATCAGCGGTTATGGATACTAACG 938
|||||| || ||||| ||||| |||| |||| || | || | ||| ||||||| | |
Sbjct 712 GGTGATGGTC-GGTGGATATGTCTAGAATGTAATGAG-TCTTCAATTAGGGATACTTATG 769
Query 939 AA-GTCCAGCCTTTGCACTTTGAAATCCGTGAATTCTTCGAAGGCTTGTTCTTGAAGGTT 997
|| | ||| ||| |||| |||||||||||||||||||| ||||||| | || || ||
Sbjct 770 AATG-CCAACCTCTGCATTTTGAAATCCGTGAATTCTTTAAAGGCTTAAACATGGAGATT 828
Query 998 GACAAAGAATTTGCTCT-GCTTCTTG-TCGAGAAACAAGCGCTTAATAAAGCTGAGGAAG 1055
|| ||| | ||| |||| | || ||| | |||||||||||||| |||| ||||||||| |
Sbjct 829 GAGAAACAGTTTCCTCTTG-TT-TTGGTTGAGAAACAAGCGCTGAATACAGCTGAGGAGG 886
Query 1056 AAGAGAAGATCGACTACCATCGTGCAGCCGT-AACCAGAGGTCT-TTGCATGTCTGAAGA 1113
|||| ||||| | | | |||| | || || |||||| ||| | |||| | || |||||
Sbjct 887 AAGATAAGATTGGCCATCATCACG-AGGTGTCAACCAGGGGT-TGTTGCTTTTCCGAAGA 944
Query 1114 G 1114
|
Sbjct 945 G 945
> Ahg358896 jgi|Araly1|358896|fgenesh1_pg.C_scaffold_8002683
Length=1257
Score = 169 bits (91), Expect = 8e-41
Identities = 161/194 (83%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 710 AACTGCTATGTTTGCCAACAA-AAGATTCCTGTAAATGCGGAAGGTATAAGAAAGTTCAG 768
||||||||||| || || || |||||| || ||| | ||||||| | ||||||||||
Sbjct 502 AACTGCTATGTCTGTGAA-AAGAAGATTTCTTTAACTTCGGAAGG--T-AGAAAGTTCAA 557
Query 769 TGAGCATCCGTTCTGGAAGGAGAAATACTGTCCTATTCATGATGAGGATGGAACTGCCAA 828
|| |||||||||||||||||| ||||||||| || ||||||||| ||||||||| ||||
Sbjct 558 TGTGCATCCGTTCTGGAAGGAAAAATACTGTTTTAGTCATGATGATGATGGAACTCCCAA 617
Query 829 GTGTTGCAGCTGTGAAAGATTAGAGCCTAGGGGAACGAACTATGTAATGCTTGGTGATT- 887
||||||||||||||||||||||||| || | ||||| || ||||||| |||| |||
Sbjct 618 GTGTTGCAGCTGTGAAAGATTAGAGTCTTGTGGAACAAAATATGTAAACCTTGAAGATGG 677
Query 888 TCCGGTGGCTATGT 901
|| | |||||||||
Sbjct 678 TC-GATGGCTATGT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66238936055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5