BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66650.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496938 jgi|Araly1|496938|fgenesh2_kg.8__2754__AT5G66650.1 1814 0.0
> Ahg496938 jgi|Araly1|496938|fgenesh2_kg.8__2754__AT5G66650.1
Length=1197
Score = 1814 bits (982), Expect = 0.0
Identities = 1093/1145 (95%), Gaps = 14/1145 (1%)
Strand=Plus/Plus
Query 50 AAAACCAAttttgttcttcttctttgattcttttttccttcat-tttttAACGTATCTTG 108
|||||||||||||||||||||| || ||| ||| ||| ||| | ||| ||||||| ||||
Sbjct 17 AAAACCAATTTTGTTCTTCTTC-TTCATT-TTTGTTCTTTC-TATTTCTAACGTAGCTTG 73
Query 109 AGAGATCGACGATGTCGTCGAAGAAATCCCTAGTTCAAAGTCTCTTCAACATTTCCAAAA 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AGAGATCGACGATGTCGTCGAAGAAATCCCTAGTTCAAAGTCTCTTCAACATTTCCAAAA 133
Query 169 CCTACTCCAGGATTTCTGGTCTTACCCGAATGCGTCCGACCAAATCCGGCGGCATTCCTC 228
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 134 CCTACTCCAGGATTTCGGGTCTTACCCGAATGCGTCCGACCAAATCCGGC---ATTCCTC 190
Query 229 CCGACGCCGGAGATTCTGGAATCCGCCGCAGATTTCTCCACAAGAGGGCATTTTTCTCGC 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CCGACGCCGGAGATTCTGGAATCCGCCGCAGATTTCTCCACAAGAGGGCATTTTTCTCGC 250
Query 289 CGGAGATAGTTCCTAAAGGTGGTAACTTGATGGAGAAACTCAGGGAATTGACTTTGTCCA 348
||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 251 CGGAGTTAGTTCCTAAAGGTGGTAATTTGATGGAGAAACTCAGGGAATTGAGTTTGTCCA 310
Query 349 ATAATAATCGTATTAGACTCGACGAGATGTTACCGCCACCTTCGCCGAAGAAATCATCAC 408
||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||
Sbjct 311 ATAATAATCGTATCCGTCTTGACGAGATGTTACCGCCACCTTCGCCGGCGAAATCATCAC 370
Query 409 CGGAGTTTTTCCCGGCGGTCACGGTGGAAGACGTGAAGAAGCTCATGAGAGCAGCGGAAA 468
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 371 CGGAGTTTTTTCCGGCGGTCACGGTGGAAGACGTGAAGAAGCTGATGAGAGCAGCGGAAA 430
Query 469 TGGAGCTGGTGAAATCGAAGCTGAGAGAGATTGGCAAGAACTGGGTTCCTTATTCGGAGT 528
||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 431 TGGAGATGGTGAAATCGAGGCTGAGAGAGATTGGGAAGAACTGGGTTCCTTATTCGGAGT 490
Query 529 TTGTTCGGGTCTGCGGAGAATACAGTTCGGATCCTGAACAAGGTAACCGGGTCGCGAATA 588
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 491 TTGTTCGGGTCTGCGGGGAAAACAGTTCGGATCCTGAACAAGGTAACCGGGTCGCGAATA 550
Query 589 TGCTTGACGAAGCTGGAAACGTCATCGTTTTGGGAAAACTCGTCTGCCTTAAACCCGAAG 648
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 551 TGCTTGACGAAGCTGGAAACGTCATCGTTTTGGGAAAATTCGTCTGCCTTAAACCTGAAG 610
Query 649 AGCTAACAAGCGCCATGGCTGGTCTGATTCCGACACTCGAACCCAGTCTCGACGCCGAGA 708
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 611 AGCTAACAAGCGCCATGGCTGGTCTGATCCCGACACTCGAACCCACTCTCGACGCCGCGA 670
Query 709 CAAGACAAGAGTTCGAACAACTTGAGATCATAAAATCAGATATCGACAAAAGAGCCGATG 768
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 671 CAAGACAAGAGTTCGAACAACTTGAGATTATAAAATCAGATATCGACAAAAGAGCCGATG 730
Query 769 ATCTGGTTCGAAAAGAATTATGGGCCGGATTAGGCCTAATAATGGCCCAAACAGTTGGAT 828
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 731 ATCTGGTTCGAAAAGAATTATGGGCCGGATTAGGCCTAATTATGGCCCAAACAATTGGAT 790
Query 829 TTTTTAGGCTGACGTTTTGGGAACTGTCGTGGGACGTGATGGAACCCATATGCTTCTACG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TTTTTAGGCTGACGTTTTGGGAACTGTCGTGGGACGTGATGGAACCCATATGCTTCTACG 850
Query 889 TAACTTCGACATATTTCATGGCTGGTTACGCCTTCTTCCTCCGAACTTCAAAGGAACCTT 948
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TAACTTCGACTTATTTCATGGCTGGTTACGCCTTCTTCCTCCGAACTTCAAAGGAACCTT 910
Query 949 CCTTTGAAGGTTTTTACAAAAGCCGGTTCGAGACGAAGCAGAAACGTTTGATTAAAATGC 1008
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 CCTTTGAAGGGTTTTACAAAAGCCGGTTCGAGACGAAGCAGAAACGTTTGATTAAAATGC 970
Query 1009 TTGATTTCGATATCGATCGATTTACCAAGCTACAGAAGATGCATCGTCCAAA-TTTGACT 1067
||||||||||||||||||| | ||||||| |||||||||||||||||||| | ||| |||
Sbjct 971 TTGATTTCGATATCGATCGCTATACCAAGTTACAGAAGATGCATCGTCCAGACTTT-ACT 1029
Query 1068 AAATCTGGTCGTTGTTGATCGTAATTCTTTTCTTCTTCTTTTTCCTAAATCGGATGCTAA 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1030 AAATCTGGTCGTTGTTGATCGTAATTCTTTTCTTCTTCTTTTTCCTAAATCGGATACTAA 1089
Query 1128 ATTAA-TGTATAGACGACTGA-AATTTTCGTAGAGAATAA-TTAGTTTTAGAGGGATaaa 1184
|||| |||||| |||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 1090 -TTAAATGTATAAACGACT-ACAATTTTCGTAGAGAATAAATTAGTTTTAGAGGGATAAA 1147
Query 1185 aaaaa 1189
|||||
Sbjct 1148 AAAAA 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5