BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G66658.1

Length=551
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935685 jgi|Araly1|935685|scaffold_403673.1                        167    9e-41


> Ahg935685 jgi|Araly1|935685|scaffold_403673.1
Length=444

 Score =  167 bits (90),  Expect = 9e-41
 Identities = 101/106 (95%), Gaps = 2/106 (2%)
 Strand=Plus/Plus

Query  3    CTTTGTCTTTGATGATTGCTTTCTTCCTCCAGCATCGTCGTCAATGGAAACGAGAATCCT  62
            ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  10   CTTCGTCTTTGATGATTGCTTTCTTCCTCCACCATCGTCGTCAATGGAAACGAGAATCCT  69

Query  63   TTGAtctctcctctcagtcgtctctctctcGCCATCTCCGCCGTCG  108
            |||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct  70   TTGATCTC-C-TCTCAGTCGTCTCTCTCTCGCAATCTCCGCCGTCG  113



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20107995403


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5