BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G66660.1
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951572 jgi|Araly1|951572|scaffold_803459.1 1801 0.0
Ahg951571 jgi|Araly1|951571|scaffold_803458.1 1074 0.0
> Ahg951572 jgi|Araly1|951572|scaffold_803459.1
Length=1238
Score = 1801 bits (975), Expect = 0.0
Identities = 1125/1199 (94%), Gaps = 4/1199 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTCTGTGGATGCTTGTCAGAGCTCATGAATGGAGAATCCAGTTCAAAGAGGAAC 60
||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 22 ATGGAACTCTGTGGATGCTTGCCAGAGCTCATGACTGGAGAATCCAGTTCAAAGAGGAAC 81
Query 61 GGACCAAGCACTTTACCGGTTAAAGAGGTCAGGACAGATATGCGGTCTAAATACTCATCT 120
||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 82 GGACCAAACACTTTACCGGTTAAAGCTGTCCGGACAGATATGCGGTCTAAATACTCATCT 141
Query 121 GACCTAAGTTCTTACACATCCGCTTGTAAAAAAGACTCCAACCTCAAATCCTTTGATTCT 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 142 GACCTAAGTTCTTACACATCCGCTTGTATGAAAGACTCCAACCTCAAATCCTTTGATTCT 201
Query 181 TCGCTTCACCAACGAACCAACATAATCATCACCTCGCTCGCTGCTCGAGCCGAGACTCAA 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 202 TCACTTCACCAACGAACCAACATAATCATCACCTCCCTCGCTGCTCGAGCCGAGACTCAA 261
Query 241 TCTTTAAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACCAAAAT 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 TCTTTGAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACCAAAAT 321
Query 301 GCAGTAAGAGTCATTATTGAAAGCAGAGAAGATGTCTGGAAGAACAAAGATCTTAAGTCT 360
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 GCAGTAAGAGTCATCATTGAAAGCAGAGAAGATGTGTGGAAGAACAAAGATCTTAAGTCT 381
Query 361 TTGGTTGATGTCTACTTCAAAAGTACTTCCAAGACCTTAGATTTCTGCAATACCGTCGAG 420
||||||||| ||||||| | |||||| |||||||||||||||||||||||||| ||||||
Sbjct 382 TTGGTTGATATCTACTTTAGAAGTACCTCCAAGACCTTAGATTTCTGCAATACTGTCGAG 441
Query 421 AATTGTGTCAAGAGAACAGAAATCAGCCAACTTATCATTCGGTTCGCGGTGAAACAGTTC 480
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 442 AACTGCGTCAAGAGAACAGAAATTAGCCAACTTATCATTCGGTTCGCGGTGAAACAGTTC 501
Query 481 GAGGCAGAGTCAGTGGACACGGATCTTGGAGGAGATAAGAAGAAGAAGAAGTATACGAAA 540
||| ||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||||
Sbjct 502 GAGACAGAGTCAGAGGACACGGATCTTGGAGAAAATAACAAGAAGAAGAAGTATGCGAAA 561
Query 541 ACCTTGGAGGAGCTGAATAAATTTAAAGCTATGGGAGACCCTTTTGATGGTGAATTGGTG 600
|||||||||||||||||||| |||||||| ||||||||||||||| |||| || || |||
Sbjct 562 ACCTTGGAGGAGCTGAATAAGTTTAAAGCCATGGGAGACCCTTTTAATGGCGAGTTCGTG 621
Query 601 ACTCAGTTCGACTCGGTCTATGATCAGCAGGTTTTG-TTTCTTGAGGAGTTGCGTAAGCA 659
||||||||||| || ||||| || |||||||||||| ||| | |||||||||||||||||
Sbjct 622 ACTCAGTTCGATTCCGTCTACGACCAGCAGGTTTTGCTTT-TAGAGGAGTTGCGTAAGCA 680
Query 660 GAGAAGAAAGCTTGATAAGAAGCAGAGGAATGTAAAAACATTGAGGACGGTGTCTAACGT 719
||||| ||||||||||||||| ||||||||||| || |||||||||||| ||||||| ||
Sbjct 681 GAGAAAAAAGCTTGATAAGAAACAGAGGAATGTGAAGACATTGAGGACGCTGTCTAATGT 740
Query 720 GTTTTTCGCTACTGCGTATGTCTCTGTTCTTGTCTTATCTGTGGTTGCAACCACAATGAG 779
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 741 GTTTTTCGCTACTGCGTTTGTCTCTGTTCTTGTCTTATCAGTGGTTGCAACCACAATGAG 800
Query 780 CGCACCGCCAGTGGTGTGTGCGGTTGCCTCTGGATCGACCGCACCGATTGAGATAACAGG 839
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TGCGCCGCCAGTGGTGAGTGCGGTTGCCTCTGGATCGACCGCACCGATTGAGATAACAGG 860
Query 840 AAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAAAGCTGTGAAGAGACAGAGAGGATT 899
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 861 GAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAGAGCTGTGAAGAGACAAAGAGGTTT 920
Query 900 GGTTTTGACGATGGAGAGTAGAGTGCAAGTTAACAATGAAGCGATGAAGAATATAAGATC 959
||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 921 GGTTTTGTTGATGGAGAGTAGAGCACAAGTTAACAATGAAGCGATGAAGAATGTAAGATC 980
Query 960 GGATGTTGATGAACTGAGAAGTT-GGGTTTCGTCGATTCTGGAGACTGTGGACTTTGCTG 1018
||| |||||||||||||||| || ||||||||| |||||||||||||||||| |||||||
Sbjct 981 GGAAGTTGATGAACTGAGAA-TTAGGGTTTCGTTGATTCTGGAGACTGTGGAATTTGCTG 1039
Query 1019 TGGAGAGAGAAGAAGAAGAGGAGGCGATGGGACTTGCGATGCAAGGAATCAAGAAGCATG 1078
| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1040 TTGAGAGAGAAGAAGAAGAGGAGGCGACGAGACTTGCGATGCAAGGAATCAAGAAGCATG 1099
Query 1079 TAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAAATGCGGCTAAGTGTAGCAAAT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1100 TAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAAATGCGGCTAAGTGTTGCAAAT 1159
Query 1139 TCATTGCTTTGGGAAGACTTCTTGTTCTGGAACACATCCTTGGGTTACCTGCTAATTGA 1197
|||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||
Sbjct 1160 TCATTGCTTTGGGAAGACTTCTAGTTCTGGAACACATCCTTAGGTTACCCGCTAATTGA 1218
> Ahg951571 jgi|Araly1|951571|scaffold_803458.1
Length=1274
Score = 1074 bits (581), Expect = 0.0
Identities = 1005/1206 (83%), Gaps = 43/1206 (4%)
Strand=Plus/Plus
Query 1 ATGGAGTTCTGTGGATGCTTGTCAGAGCTCATGAATGGAGAA-TCCAGTTCAAAGAGGAA 59
|||| ||||||||||| || || ||||||| ||| ||| || |||||| | || || ||
Sbjct 22 ATGGTGTTCTGTGGATTATTTTCGGAGCTCACGAAAGGA-AACTCCAGTCCTAACAGCAA 80
Query 60 CGG-ACCAAGCACTTTACCGG-TTAAAGAGGT-CAGGACAGATATGCGGTCTAAATACTC 116
||| ||||| ||||| ||||| | |||| ||| || ||| |||||||||| ||||||
Sbjct 81 CGGAACCAA-CACTTCACCGGCTAAAAG-GGTCCA-AACAAATATGCGGTCCCTATACTC 137
Query 117 ATCTGACCTAAGTTCTTACACATCCGCTTGTAAAAAAGACTCCAACCTCAAATCCTTTGA 176
||| ||||| ||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 138 ATCAGACCTGAGTTCTTACACATCCGCTTGTAAAAAATACTCTTCCCTCAAATCTTTTGA 197
Query 177 TTCTTCGCTTCACCAACGAACCAACATAATCATCACCTCGCTCGCTGCTCGA-GCCGAGA 235
||| ||||||||| | |||||||||| ||||||| |||||||||||||| | ||| |||
Sbjct 198 TTCATCGCTTCACGAGCGAACCAACAGCATCATCAGCTCGCTCGCTGCTC-AGGCCAAGA 256
Query 236 CTCAATCTTTAAACCTAGACTCACTCATGGAGGTTTACGGATTTCTGCTTGAACTAAACC 295
||||||||||||||||||| |||||||||||||| ||||||| ||| |||||||||||||
Sbjct 257 CTCAATCTTTAAACCTAGAGTCACTCATGGAGGTCTACGGATATCTTCTTGAACTAAACC 316
Query 296 AAAATGCAGTAAGAGTCATTATTGAAAGCAGAGAAGATGTCTGGAAGAACAAAGATCTTA 355
|| || ||||||||||||| |||||||||| |||||| || | ||||||||| |||||||
Sbjct 317 AAGATACAGTAAGAGTCATCATTGAAAGCAAAGAAGACGTTTTGAAGAACAATGATCTTA 376
Query 356 AGTCTTTGGTTGATGTCTACTTCAAAAGTACTTCCAAGACCTTAGATTTCTGCAATACCG 415
|| |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 377 AGGCTTTGGTTGATGTCTATTTCAAAAGTACCTCCAAGACCTTAGACTTCTGCAATACCG 436
Query 416 TCGAGAATTGTGTCAAGAGAA-CAGAAATCAGCCAACTTATCATTCGGTTCGCGGTGAAA 474
||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 437 TCGAGAAATGCGTCAAGA-AAGCAGAAATAAGCCAACTTATCATTCGATTCGCGGTGAAA 495
Query 475 CAGTTCGAGGCAGAGTCAGTGGACACGGATCTTGGAGGAGATAAG-AAGAAGAAGAAGTA 533
||||||||| |||| | ||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 496 CAGTTCGAGACAGAAACGGTGGACACGGATCTT---GGAGA-AAGTAAGAAGAAGAAGTA 551
Query 534 TACGAAAACCTTGGAGGAGCTGAATAAATTTAAAGCTATGGGAGACCCTTTTGATGGTGA 593
| |||||||||||||||||||| || |||||||| |||||||||||||| ||||| ||
Sbjct 552 TGTAAAAACCTTGGAGGAGCTGAACAAGTTTAAAGCCATGGGAGACCCTTTCGATGGCGA 611
Query 594 ATTGGTGACTCAGTTCGACTCGGTCTATGATCAGCAGGTTTTGTTTCTTGAGGAGTTGCG 653
|| ||||| |||| ||| || || || || |||||| ||||| |||| || ||||||||
Sbjct 612 GTTCGTGACGCAGTACGAGTCCGTATACGAGCAGCAGATTTTGCTTCTGGACGAGTTGCG 671
Query 654 TAAGCAGAGAAG-AAAGCTTGATAAGAAGCAGAGGAATGTAAAAACATTGAGGACGGTGT 712
||||| || ||| |||||||| |||||| ||||||||| |||| |||| ||||| |||
Sbjct 672 TAAGCTGA-AAGTAAAGCTTGGTAAGAAACAGAGGAATATAAAGACATGGAGGATATTGT 730
Query 713 CTAACGTGTTTTTCGCT-ACTGCGTATGTCTCTGT-TCTTGTCTTATCTGTGGTTGCAAC 770
| || ||| |||||| | ||||||| ||| |||| | |||||||||| ||||||||
Sbjct 731 CAAATGTGGTTTTCG-TGACTGCGTTTGTGACTGTAT-TTGTCTTATCGGTGGTTGC-GG 787
Query 771 CA-CAATGA-GCGCACCGCCAGTGGTGTGTGCGGTTGCCTCTGGATCGACCGCACCGATT 828
|| |||||| | ||||| || || || |||||||||| ||||||| |||| ||||||||
Sbjct 788 CAGCAATGATG-GCACCTCCGGTATTGAGTGCGGTTGCGTCTGGATTGACCACACCGATT 846
Query 829 GAGATAACAGGAAAATGGTTTAGCCAGATGTGGAAAAAGTACGAGAAAGCTGTGAAGAGA 888
||| | |||| ||||| || | |||||||||| |||||||||||||||||||||||
Sbjct 847 GAGGTTGTGGGAATATGGTGTAACAAGATGTGGAAGGAGTACGAGAAAGCTGTGAAGAGA 906
Query 889 CAGAGAGGATTGGTTTTGACGATGGAGAGTAGAGTGCAAGTTAACAATG-AAGCGATGA- 946
|||||||| |||||||| || |||||| | | ||||||| |||||||| || |||||
Sbjct 907 CAGAGAGGTTTGGTTTTAACAATGGAGCTTGGGGTGCAAGCTAACAATGTAA-CGATGGT 965
Query 947 AGAATATAAGAT-CGGATGTTGATGAAC-TGAGAAGTTGGGTT-TCGTCGATTCTGGAGA 1003
| ||||||| || || | ||||| ||| |||| | | || | || ||||||||| |||
Sbjct 966 A-AATATAAAATTCGAA-GTTGAA-AACCTGAGCA-TAAGGATCTCATCGATTCTGAAGA 1021
Query 1004 CTGTGGACTTTGCTGTGGAGAGAGAAGAAGAA-GAGGA-GGCGATGGGACTTGCGATGCA 1061
| || |||||||||||||||||||||||| || || | ||| | | || ||||||||||
Sbjct 1022 CCGTAGACTTTGCTGTGGAGAGAGAAGAA-AATGAA-ATGGCCACGAGATTTGCGATGCA 1079
Query 1062 AGGAATCAAGAAGCATGTAGATGGGTTTACTGAGAAAATGGAAGAAGTTGGTGAAA-ATG 1120
|| |||||||||| | ||||| ||||||||||| ||||| || |||||||| |||| | |
Sbjct 1080 AGAAATCAAGAAGAAAGTAGAAGGGTTTACTGAAAAAATCGAGGAAGTTGGAGAAAGA-G 1138
Query 1121 CGGCTAAGTGTAGCAAATTCATTGCTTTGGGAAGACTTCTTGTTCTGGAACACATCCTTG 1180
| || |||||||||||| |||| || ||||| |||||| | ||||||| ||||||||||
Sbjct 1139 CAGCCAAGTGTAGCAAACTCATCGCGTTGGGGAGACTTGTAGTTCTGGGACACATCCTTA 1198
Query 1181 GGTTAC 1186
| ||||
Sbjct 1199 GTTTAC 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5